mRNA_L-elsbetiae_contig16233.4264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16233.4264.1
Unique NamemRNA_L-elsbetiae_contig16233.4264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16233.4264.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.670e-7
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   71 DSGRNSSSPCVLVYIKTSLRMATPPIYNRLQHLHHLHHSPSGRPQPG--------SPSGR 226
            D+  NSSS C+L Y+KTSL +ATPP+Y R +  HH  +SPSGR QPG        SPSGR
Sbjct:   52 DADWNSSSQCMLAYLKTSLCVATPPLYTRHEEQHH--NSPSGR-QPGHRHHADDSSPSGR 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16233.4264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U5_ECTSI2.670e-755.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16233contigL-elsbetiae_contig16233:421..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.4998765-CDS-L-elsbetiae_contig16233:420..7321622815670.4998765-CDS-L-elsbetiae_contig16233:420..732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16233 421..732 +
1691683027.577082-CDS-L-elsbetiae_contig16233:420..7321691683027.577082-CDS-L-elsbetiae_contig16233:420..732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16233 421..732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16233.4264.1prot_L-elsbetiae_contig16233.4264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16233 421..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16233.4264.1

>prot_L-elsbetiae_contig16233.4264.1 ID=prot_L-elsbetiae_contig16233.4264.1|Name=mRNA_L-elsbetiae_contig16233.4264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
YVREGGGISITAFLAASFFHLTTRLRPEQLISVRPRLYQDFLADGDAAYL
QPTSASPPPAPQPIRTASARQPFWTNDCSRQHRRIPIHHHGAPLSPSGRT
AELG
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mRNA from alignment at L-elsbetiae_contig16233:421..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16233.4264.1 ID=mRNA_L-elsbetiae_contig16233.4264.1|Name=mRNA_L-elsbetiae_contig16233.4264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=313bp|location=Sequence derived from alignment at L-elsbetiae_contig16233:421..733+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTGCGAGAGGGAGGTGGCATAAGTATAACTGCCTTCTTGGCGGCGTC
GTTCTTCCATCTGACGACTCGACTCCGGCCGGAACAGCTCATCTCCGTGC
GTCCTCGTCTATATCAAGACTTCCTTGCGGATGGCGACGCCGCCTATCTA
CAACCGACTTCAGCATCTCCACCACCTGCACCACAGCCCATCCGGACGGC
CTCAGCCAGGCAGCCCTTCTGGACGAACGACTGCTCACGGCAACACCGAC
GAATACCTATACATCATCATGGCGCACCCTTGAGCCCTTCGGGAAGGACT
GCTGAACTTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16233:421..733+

>mRNA_L-elsbetiae_contig16233.4264.1 ID=mRNA_L-elsbetiae_contig16233.4264.1|Name=mRNA_L-elsbetiae_contig16233.4264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig16233:421..733+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTGCGAGAGGGAGGTGGCATAAGTATAACTGCCTTCTTGGCGGCGTC
GTTCTTCCATCTGACGACTCGACTCCGGCCGGAACAGCTCATCTCCGTGC
GTCCTCGTCTATATCAAGACTTCCTTGCGGATGGCGACGCCGCCTATCTA
CAACCGACTTCAGCATCTCCACCACCTGCACCACAGCCCATCCGGACGGC
CTCAGCCAGGCAGCCCTTCTGGACGAACGACTGCTCACGGCAACACCGAC
GAATACCTATACATCATCATGGCGCACCCTTGAGCCCTTCGGGAAGGACT
GCTGAACTTGGATACGTGCGAGAGGGAGGTGGCATAAGTATAACTGCCTT
CTTGGCGGCGTCGTTCTTCCATCTGACGACTCGACTCCGGCCGGAACAGC
TCATCTCCGTGCGTCCTCGTCTATATCAAGACTTCCTTGCGGATGGCGAC
GCCGCCTATCTACAACCGACTTCAGCATCTCCACCACCTGCACCACAGCC
CATCCGGACGGCCTCAGCCAGGCAGCCCTTCTGGACGAACGACTGCTCAC
GGCAACACCGACGAATACCTATACATCATCATGGCGCACCCTTGAGCCCT
TCGGGAAGGACTGCTGAACTTGGA
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