mRNA_L-elsbetiae_contig1623.4262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1623.4262.1
Unique NamemRNA_L-elsbetiae_contig1623.4262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 4.100e-72
Identity = 148/393 (37.66%), Postives = 196/393 (49.87%), Query Frame = 1 
Query:  352 QAESGFECGGA-GFPGVRSSEGTGKICCAEECGTCGGSGCAGFATEHNMTASHCCTTEIRDLGVMCSDTMEAPCIIAHLSTHDEPEPETQAVQLAD-----YELVRCSEMETADGGETAFFYTKQDENLMLSTCSDECAEQAALYFAVLEGDVCGCGDSEEFL-----SADDRPVGECDMACPGNAAEICGGRTSYVLYEIFAGEPGSSDDGESGTGSGSXXXXXXXGETXXXXXXXXXXXXXDLPTCSTGITGVESESGDVCCDYKCVTCGGDKCRGNGDCCEHTIQLKHGLCSDTGTAPCVYNE-ADIDTPAPVA---IPEVEPRETRYCSNGLPGVESDDGITCCLEACVGCS-EKDEECVGASACCAQFIKEQEIYCQDEGVEAGPCIM 1482
            +A +G  C  A G  G+ S+ G   +CC  ECG CGG  C   A    +    CC ++I   GV CSD+  APCI+       + E ET + Q+ +     Y  + C ++      E  F  +    +L +  C + CA +++LYFA++EGDVC CGD E F+     S +++  G C+ ACPG+  E CGG  ++ LY I                                           LPTC+ GI GVE+ SGDVCC + C  CGGDKC G G CCEHTIQ + GLC DT  APCV+N  A   TP P     +P   P     C+  +PG+ESDDG  CC+E C  C  E  +EC G  ACC + I    + C DEGVE GPCI+
Sbjct:  121 KASAGNTCSNANGVEGISSANG--DVCCPSECGLCGGRDCTQAALAAGLDDGDCCVSDITKEGVKCSDSGAAPCIVY------DSEDETGSNQVREASTPVYITLGCGKI---GDYEDPFTVSSTVSDLTVEACYELCASESSLYFALVEGDVCSCGDQETFVQTFLDSYEEQTAGTCNTACPGSPDETCGGAQAFDLYRI-------------------------------------------LPTCTGGIIGVEAASGDVCCPFSCGECGGDKCVGEGGCCEHTIQSREGLCEDTNAAPCVFNVVAPPPTPVPAPTTPMPTRPPGPVSTCTGDIPGLESDDGTVCCMEHCASCRIESADECAGVPACCQEKILLTGLMCSDEGVEEGPCIL 459
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.130e-67
Identity = 140/388 (36.08%), Postives = 185/388 (47.68%), Query Frame = 1 
Query:  352 QAESGFECGGA-GFPGVRSSEGTGKICCAEECGTCGGSGCAGFATEHNMTASHCCTTEIRDLGVMCSDTMEAPCIIAHLSTHDEPEPETQAVQLADYELVRCSEMETADGGETAFFYTKQDENLMLSTCSDECAEQAALYFAVLEGDVCGCGDSEEFLSA-----DDRPVGECDMACPGNAAEICGGRTSYVLYEIFAGEPGSSDDGESGTGSGSXXXXXXXGETXXXXXXXXXXXXXDLPTCSTGITGVESESGDVCCDYKCVTCGGDKCRGNGDCCEHTIQLKHGLCSDTGTAPCVYNE-ADIDTPAPVA---IPEVEPRETRYCSNGLPGVESDDGITCCLEACVGCS-EKDEECVGASACCAQFIKEQEIYCQDEGVEAGPCIM 1482
            Q  +G  C    G  G+  S G G +CC  EC  CGG  C   A    +    CC ++I   GV CSD+  APC+ A+ S  +   P  Q      Y  + C ++      E  F  +    +L    C + CA +++LYF ++EG+VC CGD E F+       D++    C  ACPG+  E CGG  ++ LY+I                                           LPTC+ GI GVE+ SGDVCC + C  CGGD+C G G CCEHTIQ +  LC  T  APCV+N  A   TP P     +P   P     C+  +PG+ESDDG  CC+E C  C  E  ++CVG  ACC + I    + C DEGVE GPCI+
Sbjct:  121 QESAGDTCSNTDGVEGI--SSGDGDVCCPSECVLCGGRDCTEAALAAGLADGDCCVSDITKEGVKCSDSGAAPCV-AYDSEDETGSPLVQEASTPVYIALGCGKI---GDYEDPFTVSSTVSDLTAEACYELCASESSLYFGLVEGNVCSCGDEETFVETFLDTYDEQTAATCSTACPGSPDETCGGAQAFDLYQI-------------------------------------------LPTCTGGIVGVEAASGDVCCPFSCGECGGDRCVGEGGCCEHTIQSREDLCEYTNAAPCVFNVVAPPPTPVPAPTTPMPTRPPGPVSTCTGDIPGLESDDGTVCCMEHCSSCRIESADQCVGVPACCQEKILLTGVKCSDEGVEEGPCIL 459
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.140e-23
Identity = 136/408 (33.33%), Postives = 173/408 (42.40%), Query Frame = 1 
Query:  385 GFPGVRSSEGTGKICCAEECGTCGGSGCAGFATEHNMTASHCCTTEIRDLGVMCSDTMEAPCIIAHLSTHDEPEPETQAVQLADYELVRCSEMETADGGETAFFYTKQDENLMLSTCSDECAE-QAALYFAVLEGDVCGCGDSEEF---LSADDRPVGECDMACPGNAAEICGGRTSYVLYEIFAGEPGSSDDGESGTGSGSXXXXXXXGETXXXXXXXXXXXXXDLPTCSTGITGVESESGDVCCDYKCVTCGGDKCR-------GNGDCCEHTIQLKHGLCSDTGTAPCVYNEADIDTPAPVAIPEVEPRE------------------TRYCSNGLPGVESDDGITCCLEACVGCSEKDEE----CVGASACCAQFIKEQEIYCQDEGVEAGPCIM*RLAAAAVP 1509
            G PG++S    G  CC  ECG CGGS CA +     + A +CC + I + G +CS  +EAPC++    +   P P T                                      TCS+     Q+     + E   CG  D +EF   L AD+  V   D+   G    I      Y+     A  P +           + XXXXXX   XXXXXXXXXXXXX  PTCSTGI G+ES  G VCC   C  CGG  C        G   CC   I      CS+TG APCV  +  + TPAPVA P                        T  CSNG+PG++S  G++CCL  C  C   D +     +GA  CC   I+E    C  + +EA PC++   A A  P
Sbjct: 1168 GIPGIQS----GVSCCLAECGECGGSDCAEYGD--GLGADNCCQSNIEEYGELCSIKLEAPCVVD--DSAPAPSPVTMPTAXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSDNACCLAECGACGGSDCDEFGGGLGADNCCVS--DIVEHGEPCSIALEAPCYIDDSAPAPSPVAMP---------TAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVLADVVL-TPAPVAEPTXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQS--GVSCCLADCGECGGSDCDEFGGGLGADNCCESDIEEYGELCSIK-LEA-PCVVDASAPAPSP 1548
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.890e-13
Identity = 124/486 (25.51%), Postives = 172/486 (35.39%), Query Frame = 1 
Query:  385 GFPGVRSSEGTGKICCAEECGTCGGSGCAGFATEHNMTASHCCTTEIRDLGVMCSDTMEAPCII-AHLSTHDEPEPETQAVQLADYELVRCSEMETADGGETAFFYTKQDENLMLSTCSDECAE-QAALYFAVLEGDVCGCGDSEEF---LSADDRPVGECDMACPGNAAEICGGRTSYVLYEIFAGEPGSSDDGESGTGSGSXXXXXXXGETXXXXXXXXXXXXXDLPTCSTGITGVESESGDVCCDYKCVTCGGDKCR------GNGDCCEHTIQLKHGLCSDTGTAPCVYNEADIDTPAPVAIPEVEPRE--------------------------------TRYCSNGLPGVESDDGITCCLEACVGC--SEKDE--ECVGASACCAQFIKEQEIYCQDEGVEAGPCIM*RLAAAAVPHV*FFWRPLFIYQAMFVGLAASAGGWGTAFGRVGVKIGLKRVE*C----DDLGSRLASKGAAHC 1689
            G PG+RS    G  CC  ECG CGGSGC  F     + A +CC   I + G +CS T+EAPC++   L     P P    V L+++ L     +         F  + +  +L    CS+     Q+     + E   CG  D +EF   L AD+     C ++      E+C    S  L                                             + P    G++         CC  +C  CGG  C       G  +CCE  I+    LCS    APCV  +  +  P+PVA+P                                      T  CSNG+PG+++D+   CCL  C  C  S  DE    +GA  CC   I E    C    +EA PC +       +P +          Q+      A  GG G + G   +  GL     C    +D G   + K AA C
Sbjct:  814 GIPGIRS----GNACCLAECGACGGSGCDEFGG--GLGADNCCEGNIEEHGELCSITLEAPCVVDGRLVADTVPCPSCLMVCLSEHGLTLPPSL---------FRISSRYSSLPPDMCSNGIPGIQSGSACCLAECGACGGLDCDEFGGGLGADN-----CCVSDIVEHGELC----SIAL---------------------------------------------EAPCYIDGVS---------CCLTECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVV-DGTVPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQTDNA--CCLAECGACGGSGCDEFGGGLGADNCCVSDIVEYGELCSI-ALEA-PCYIDDTCYNGIPGI----------QSGNACCLAECGGCGGS-GCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPC 1205
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.830e-9
Identity = 55/172 (31.98%), Postives = 70/172 (40.70%), Query Frame = 1 
Query: 1048 DLPTCSTGITGVESESGDVCCDYKCVTCGGDKCR-------GNGDCCEHTIQLKHGLCSDTGTAPCVYNEADIDTPAPVAIPEVEPRETRY-----------------CSNGLPGVESDDGITCCLEAC-----VGCSEKDEECVGASACCAQFIKEQEIYCQDEGVEAGPC 1476
            ++  CSTGI G+ES  G VCC   C  CGG  C        G   CC+  +      CS +  APCV +    + PA    PE                         CSNG+PG++S  G +CCL  C      GC+E     +G   CCA  I+E    C      A PC
Sbjct:  340 EVIVCSTGIPGIESSDGAVCCPINCTQCGGAGCATVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDAPATEMPAMAPTPEXXXXXXXXXXXXXXXXXXXXXXGDVCSNGIPGIQS--GDSCCLAECGACGGSGCAEFGGG-LGEDNCCAVRIEEYGELCSV--ALAAPC 506
[Close]
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.910e-8
Identity = 60/198 (30.30%), Postives = 74/198 (37.37%), Query Frame = 1 
Query: 1048 DLPTCSTGITGVESESGDVCCDYKCVTCGGDKCR-------GNGDCCEHTIQLKHGLCSDTGTAPCVYNEA-----------------------DIDTPAPVAIPEVE--------------------PRETRYCSNGLPGVESDDGITCC---LEAC--VGCSEKDEECVGASACCAQFIKEQEIYCQDEGVEAGPC 1476
            ++  CSTGI G+ES  G VCC   C  CGG+ C        G   CCE  +Q     CS +  APCV ++                           TP P A P  E                          CSNG PG++S  G +CC    EAC   GC+E     +G   CCA  I+E    C      A PC
Sbjct:  408 EVIVCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDDVLSPTETPXXXXXXXXXXXXXXXXXXXTPEPTAAPATEMPAMAXXXXXXXXXXXXXXXXXXXDVCSNGFPGIQS--GDSCCHAECEACGGFGCAEFGGG-LGEDNCCAVRIEEYGELCST--ALAAPC 600
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1623.4262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L879_9PHAE4.100e-7237.66WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ60_ECTSI1.130e-6736.08WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ68_ECTSI3.140e-2333.33WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE7.890e-1325.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ37_9PHAE1.830e-931.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI3.910e-830.30EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1623contigL-elsbetiae_contig1623:17350..24147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Ec32 ortholog descriptionCarbohydrate-binding WSC
Ec32 orthologEc-10_000210.2
Exons10
Model size2450
Cds size1308
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1623.4262.1prot_L-elsbetiae_contig1623.4262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1623 17704..23182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.1869655-UTR-L-elsbetiae_contig1623:17349..174591622815670.1869655-UTR-L-elsbetiae_contig1623:17349..17459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 17350..17459 +
1691683027.3827767-UTR-L-elsbetiae_contig1623:17349..174591691683027.3827767-UTR-L-elsbetiae_contig1623:17349..17459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 17350..17459 +
1622815670.1977835-UTR-L-elsbetiae_contig1623:17636..177031622815670.1977835-UTR-L-elsbetiae_contig1623:17636..17703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 17637..17703 +
1691683027.3929846-UTR-L-elsbetiae_contig1623:17636..177031691683027.3929846-UTR-L-elsbetiae_contig1623:17636..17703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 17637..17703 +
1622815670.33894-UTR-L-elsbetiae_contig1623:23182..241471622815670.33894-UTR-L-elsbetiae_contig1623:23182..24147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 23183..24147 +
1691683027.4910471-UTR-L-elsbetiae_contig1623:23182..241471691683027.4910471-UTR-L-elsbetiae_contig1623:23182..24147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 23183..24147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.212326-CDS-L-elsbetiae_contig1623:17703..177441622815670.212326-CDS-L-elsbetiae_contig1623:17703..17744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 17704..17744 +
1691683027.4035141-CDS-L-elsbetiae_contig1623:17703..177441691683027.4035141-CDS-L-elsbetiae_contig1623:17703..17744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 17704..17744 +
1622815670.23102-CDS-L-elsbetiae_contig1623:18227..183151622815670.23102-CDS-L-elsbetiae_contig1623:18227..18315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 18228..18315 +
1691683027.4140618-CDS-L-elsbetiae_contig1623:18227..183151691683027.4140618-CDS-L-elsbetiae_contig1623:18227..18315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 18228..18315 +
1622815670.2436795-CDS-L-elsbetiae_contig1623:19337..193891622815670.2436795-CDS-L-elsbetiae_contig1623:19337..19389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 19338..19389 +
1691683027.4239068-CDS-L-elsbetiae_contig1623:19337..193891691683027.4239068-CDS-L-elsbetiae_contig1623:19337..19389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 19338..19389 +
1622815670.25698-CDS-L-elsbetiae_contig1623:19858..200831622815670.25698-CDS-L-elsbetiae_contig1623:19858..20083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 19859..20083 +
1691683027.4332721-CDS-L-elsbetiae_contig1623:19858..200831691683027.4332721-CDS-L-elsbetiae_contig1623:19858..20083Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 19859..20083 +
1622815670.266804-CDS-L-elsbetiae_contig1623:20307..204531622815670.266804-CDS-L-elsbetiae_contig1623:20307..20453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 20308..20453 +
1691683027.4478297-CDS-L-elsbetiae_contig1623:20307..204531691683027.4478297-CDS-L-elsbetiae_contig1623:20307..20453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 20308..20453 +
1622815670.2766032-CDS-L-elsbetiae_contig1623:21212..215341622815670.2766032-CDS-L-elsbetiae_contig1623:21212..21534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 21213..21534 +
1691683027.4572682-CDS-L-elsbetiae_contig1623:21212..215341691683027.4572682-CDS-L-elsbetiae_contig1623:21212..21534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 21213..21534 +
1622815670.2884564-CDS-L-elsbetiae_contig1623:21893..219601622815670.2884564-CDS-L-elsbetiae_contig1623:21893..21960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 21894..21960 +
1691683027.4679804-CDS-L-elsbetiae_contig1623:21893..219601691683027.4679804-CDS-L-elsbetiae_contig1623:21893..21960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 21894..21960 +
1622815670.3035548-CDS-L-elsbetiae_contig1623:22224..223431622815670.3035548-CDS-L-elsbetiae_contig1623:22224..22343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 22225..22343 +
1691683027.475634-CDS-L-elsbetiae_contig1623:22224..223431691683027.475634-CDS-L-elsbetiae_contig1623:22224..22343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 22225..22343 +
1622815670.3223376-CDS-L-elsbetiae_contig1623:22934..231821622815670.3223376-CDS-L-elsbetiae_contig1623:22934..23182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 22935..23182 +
1691683027.4834611-CDS-L-elsbetiae_contig1623:22934..231821691683027.4834611-CDS-L-elsbetiae_contig1623:22934..23182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 22935..23182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1623.4262.1

>prot_L-elsbetiae_contig1623.4262.1 ID=prot_L-elsbetiae_contig1623.4262.1|Name=mRNA_L-elsbetiae_contig1623.4262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=436bp
MAYNMAVPGGKTLRTNMMTRLILLGMVPLCATGKIQGVLGREEVDGRLFL
RKESGRNLQAESGFECGGAGFPGVRSSEGTGKICCAEECGTCGGSGCAGF
ATEHNMTASHCCTTEIRDLGVMCSDTMEAPCIIAHLSTHDEPEPETQAVQ
LADYELVRCSEMETADGGETAFFYTKQDENLMLSTCSDECAEQAALYFAV
LEGDVCGCGDSEEFLSADDRPVGECDMACPGNAAEICGGRTSYVLYEIFA
GEPGSSDDGESGTGSGSASGSASAGETGDDGSDGESGGDGDLPTCSTGIT
GVESESGDVCCDYKCVTCGGDKCRGNGDCCEHTIQLKHGLCSDTGTAPCV
YNEADIDTPAPVAIPEVEPRETRYCSNGLPGVESDDGITCCLEACVGCSE
KDEECVGASACCAQFIKEQEIYCQDEGVEAGPCIM*
back to top

mRNA from alignment at L-elsbetiae_contig1623:17350..24147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1623.4262.1 ID=mRNA_L-elsbetiae_contig1623.4262.1|Name=mRNA_L-elsbetiae_contig1623.4262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6798bp|location=Sequence derived from alignment at L-elsbetiae_contig1623:17350..24147+ (Laminarionema elsbetiae ELsaHSoW15)
CGACAGACGACAGAGAGCACCGGCCACTCTTTCCTCTCTCCCACCCCGCC
AGGAAGACTGAACCCCAGAAAAGACCTTCCAACAAATAGTTCGGACGGGA
ACACCAAAAGGTGCGAGCTTGCTCCCTCTGTATTCGGCGCCACGCGGTCG
CGGTGTAACCGGGCGATCAATTTAGGGTCCCTAACCCTAACCCTAACCTT
ACTCTATATTTTCACGATTCCCTCAGTCACAAAACAAACATTTTCATCTC
CTTGGGCCTACTCCAACTGATACACATTGAATCGCAGGCGGAACACCCCG
ACGGAGAGGAGGGAGATTTTCTGGTGGCGCCCAATCTACGGCACAAAGAC
AGCGATGGCGTACAACATGGCGGTGCCTGGAGGCAAGACCCTCAGGTACA
GACGTACACACTATATTCCCGTATTTTGGAGCTCACCCAACGTGCTTTTC
CCGAACAACACTCTCCGACTCTTTGACTCTTGAATCTGCCGGGTTGCCTC
GGTAGAGAGCGATAATAGCGAAGAAAGACGGTGCCGCAATTAGGTGTGGC
ACGTACTCGGTAGATTTCCGCACACACCGCTGTCTGCGCATCCACGCACA
TGATCACACGCTCGGTTCCGGAACATTATCTTGGCAGCAAAATTACTTGG
CAATCCAACGAGTCTCTCCGTCCCCTCTCAAACCCAGAGGGGAGGTTCCG
CGCAGTGTTCCCTTCTCAGGGGAGTGTGTGTTTGGTGTTACCAACTATGT
TCGCGTTGGAACCCCGTTTGCTGGTTGTTCCCATGCAGTGTATCTAATGA
CTTTTTAAAAGTTTGTCGTGTCTGTCGACTCGACACTGCTGTTGCCCGAA
AATAATTTGCCCGCGCTCCTGTACACAGAACCAATATGATGACCCGGCTG
ATCCTGTTGGGGATGGTGCCCCTGTGTGCCACCGGAAAAATCCAGGGCGT
GCTGGGCCGAGAGGAGGTATGTACAACAGTCAGGATTGCCGTCTATGAGG
TGTCCACAACCAACCACTTGCAACCCGCACACTATTCAGTGAAACAAAAA
AAAGCGCCCCGGCCAAGCCGCGGCGGAAAAAGATCCGCGCGGTCGGGAAT
CGAAAGATTAGACTTGTCATCGATGGGGGAAGGACAGAGCTGGAAGGACA
CACGGATGCCGAGTCATCGCAGAGTTCTGGAGTGTGCGGTGCAAATCCGA
GCCAGCTTTTACTTCCAAGTTTCGCCAGCGCGTTGGCTCCGATTACCCGG
TGTGTCGCAAGGTAGTAAATCTAGTATGTGGACCCAATGAAAAAAGAAAA
AAGTACCAGCAGTGGAGGGGGGCCACCTACCTCGAATTACTCAATGCCAC
GGTGTTGAGACGTTATCGATACATGGCAGGGCTAATCGTTTTTACTGGTA
GACTAAATGAAATTTTGAGTGCGATGCGGCAAATTATTTAGTGAAGTGCG
CGCTTCGAGTTTTCGAAACGAGGGGGATAGCGTCTGAAAAGGCTCCAGCC
GCGGTTGGTCTGTCTACAACTCTCACTTTTGTTCCCTCTTTGCATTTTCC
AGTTAGGCTGCAACTTGAAACCGGAGTAGAGTTTGTAGTTCAAACACGCA
TGCTAGGTGCCATACCTCGGTGGTTCTCGAACTAATAAATTTGAGCAGTG
ACTGTACTTAGTCTTCTTGTATGGACACGCTCAACGTACATACCTATCCC
TGGATCACACACGAAGATAGAGAGGTTCACATGAAGCCAACTGCGATACC
GCCGTACGTTTTGGCATCACCTTCAAGCTATCTGCACTTGAAAGTACGAC
GTGTATGCGCTGAGTTGTTCTCTGTATGGGCTGAGTTGTTCTCTCCAGCA
GGCACACTTGCAACCAGTGCATTGCACCGTCTTGTCTGCCGTTTCCCGTA
TGCATGCAATCATTCTATTGTTTTCGCTCTCAGCTTAAATTGAACGAAAC
GCTCGCGATACATTAAATGCCCCCCTCCCCGCCCTCAGGTGGATGGCCGT
CTTTTTCTAAGGAAGGAGAGCGGCCGGAACCTCCAGGCCGGTGAGAGATT
TTTTTCAATGGCAAGGGGAGGCCAGATCTTCGCGATCGAACCAACATGTT
GTTAAGGTGTACACGATATCCACTTTTAACGGTTGTGCTTGATGGTGGTT
CGAGTGTCAACTGCAGCAGCAAATGCCCATGGACAGCATATCTTTTTCTC
CTTGATCGATCTATCCGTGGCTCTGTGTGCAGCTTAGTGCAACCCCCGTG
ATCACTAGAAAACCGAAAAAGTCGAGGTGGTAGATATGAGTACAAGCGCG
ATCTTGCCTGACGCCCTGATCTCTCACGGCTTTGTTCGTTCGTCCCCCCT
AATCACATGTGCTGAGCTCTTTGCAGCCCGTGCAAGTCACGTGTAATCGC
GTTCCCAGAATTGACCCCTTTACATCTGTACATACCCATGTACAATATCA
TCGGTTAGCCCATTGACTTTCACGGATTCGTTCTTCCATATTTTTTATGT
TGCCTGCAGAGTCAGGCTTCGAGTGCGGCGGTGCCGGCTTTCCCGGCGTC
CGCTCCTCGGAGGGCACCGGGAAAATATGTTGTGCTGAAGAGTGTGGCAC
GTGCGGTGGGTCCGGTTGCGCTGGGTTCGCCACGGAGCACAATATGACTG
CGAGCCACTGCTGTACCACCGAGATCAGAGATTTGGGCGTCATGTGCAGC
GACACTATGGAGGCTCCGTGTATCATCGCACACCGTGAGTTTTGGGGAGG
GCGTAAGAGTGATCACGGGCAGTCCACGCCGCTCTCGCCATCGTATGTAA
GGTATTCACGCGACAGCTTGTGATGTTGTTCAATATATACCCATGTTGGA
ATTGTTGTTGGAGTTCCGTGCGGCTGATCGTTTTACGGATCGTTCTGCGG
ATCGTTCCCCACGCGTTTCATCTCGCGCGGGATCAATGCATCAATCATAT
ATTTGTAGTCTCCACCCACGACGAGCCGGAGCCGGAGACGCAGGCGGTGC
AGTTGGCGGACTACGAGCTCGTGAGGTGCAGCGAGATGGAAACGGCGGAT
GGTGGAGAGACTGCCTTTTTCTACACCAAGCAGGACGAGAATCTCATGCT
CTCGGTGGGTGTACCTATGTGCGCGCACGTGTTTGTTCCTGGGTTGTTCC
TGGGTTGTTGTTGTTGTTGTGTTTTTGTTTATTCTCTGCTGCGTTTCGTA
GCTCGGTGTGCGGGTCGCCCCTTCCTCCCGGGGTATCTATGTTTCTGCAC
GCATAGGGATCTGTCGTCTCGGTACGCGAGTGGCCTTCCTGCATTTGCTT
TCCTCGAAGGCTCCAAAGGGTTTCATCTTTAGTCGGGGGTCATGTCGGTT
GTCAGGGAGGTGTTGACATACGTCCTGTACTCTGTAGGATTGCTCTTGGT
TCCTCTTCGGACAGCGGGTCGACCTGGCCATGCATAAAAACGGTCGTGCA
TTCAGGCTTGATCCGTGGCGGCACTGGTGTGGTGGGCTCCTTTCAGACGT
CCACAGAGCCTTAGTCAGAAATCGCAAGGTGATCTTTTTACGGCCGCACC
ACGGATGCCACGCCTTTCGACCACCACATACTGACCCAAACCGATCAAAA
ACCGGATGGGGCTCGTTCTCAACGCCGTTGCTTGACACGGTTTTCTTGAC
ACGGCTTTCGCCCGATTCAACATCGACCAGACCGGGTGGAACTCGTCCCA
ACGCCGTTGCTTTTCTTTGCTGCCTGGGACATACACTCACGCAAAAATAC
ACCACCGCCAACCCCGCAAACGCATCAACGCACTCACTAGACCGCCCCCC
ACGCATCCCGGGATTGCGCTACCGTCATGGCGACACAACCGCCTCCATAA
CCCCGAAAACCAGACCTGCTCTGACGAGTGCGCCGAGCAGGCCGCCCTGT
ACTTCGCGGTGCTTGAGGGCGACGTGTGCGGGTGCGGCGACTCCGAGGAG
TTCCTCTCGGCCGACGACAGACCTGTCGGTGAGTGCGACATGGCGTGCCC
GGGGAACGCCGCCGAGATCTGCGGGGGGCGGACGTCCTACGTCCTCTACG
AGATCTTCGCGGGCGAGCCCGGAAGCAGCGACGATGGCGAGAGCGGGACA
GGCAGCGGCAGCGCCAGCGGCAGCGCCAGCGCGGGCGAGACCGGCGATGA
CGGCAGTGACGGCGAGAGCGGTGGAGACGGCGACCGTGAGTGCTGCGTGT
GGTGTGAATGACTCAAGAATAGGTGGTCACGGAGGGTCACTGCGCGGGCG
GGTCCTTGCCCTCCCCGGTGATGGATTGGCTGAGAATTCATGGAGGAGTC
AAAGCGACGACCGTTGTGGCGACGGACAAGGTTGTGTCCGAAATAGATTC
AGACGGCGAACTTACCGAACCTCCTCTACCGAACCTCCTTCAACCACCCG
TATGCGTTTCGCTTCTTCATCTAAGTGTCTCCCTGTCATGCGCCCTCGCC
TGACAACGCAATGCAATATAATGCGGCTGGGGTCTTTACTCTGGATGCCG
CCTGGAAAAAACGTCGACCCCGACACCAACACCAACACCTCCAGTGCCCA
CGTGCAGCACTGGTATCACTGGAGTTGAGTCCGAGAGCGGCGACGTCTGC
TGCGACTACAAGTGAGACAAGAGAGACAGAGACATAACAACGGGCATAAA
TAGAGACTGCAACTCATATGTACCCAACTTGCCAGCGGTGGCGTCTGCCG
CTCTCTGAACCAAACCGCAATCGTCATGGTTGCCCATTAAGTGTTTCTGT
GTCTCGGCTGTGTCTCGATCACATGTACCAGGGCCTCAAACCGCACTGTT
TTTCCATTCTATATTCTCGTTGTTGATGTTGCTGTTGCTGCTGATGTTAT
TCGTGTGTTGTGCGGCACCTTTCAGGTGCGTCACGTGCGGCGGTGACAAA
TGCCGCGGCAACGGCGATTGCTGCGAGCATACCATACAGTTGAAGCACGG
CCTGTGCTCCGACACCGGCACGGCTCCCTGCGTCTACAACGAGGGTAAGC
ATTATTGTCGGCCTTGCCATTTTGAGAATGTTCCGAGAATGCAACCGGAT
GCTGCCGCTGCTGTTAAATATCTTTATTGCCCTACACACCCTCAGATAGA
CGGGCGTGCTGGACGCCAGTGGCGTGTACGGTAGAATCCGCGGGAGTGGG
AAAGGGGGGGGCGACACCGAGAAACAAGGATGCGCCCATCGTGTGTACGT
ATTTACACACGTCGCAGAATTGTTAGTGCGGTCATCAACCACCAACCGTC
GTGTAGGAGGGAAATACGGGACGTAAGAGATGCACAAGAAGAGCATGAAA
GAGGCCCTGCACATTTATTATTATACTGCATGTAATGTCGCCCCCCTTGA
GACGTAATGTCGCCCCCCTTGAGACCGTTTCTGCAACCTACTTCCCTTCG
AAATTACCCTGTTATATCTTCCCTTGGTTCCGCCCTTGCCTCGCTCGTTT
GGTTTGTATAACATTTTCTTGTGCCTGGCTGACTCACAAAGAGCTGTCCC
CGCCTCGCCTGACGAACCTGTTCTCGCACGCGGCTGCCCACCCGTGGTAT
ATTACTGCTGTTGGCTCTCCCTACAACACGACCAGCCGACATCGACACGC
CGGCGCCGGTGGCGATCCCCGAAGTCGAGCCGCGCGAGACGCGCTATTGC
AGCAACGGCCTTCCGGGCGTCGAGTCTGATGACGGTATCACCTGCTGCCT
GGAGGCCTGCGTCGGTTGCAGCGAAAAGGATGAAGAATGCGTTGGCGCCA
GTGCCTGCTGCGCACAGTTCATCAAAGAACAGGAAATCTACTGCCAGGAT
GAAGGCGTTGAAGCTGGCCCGTGCATTATGTGAAGGCTTGCGGCAGCGGC
GGTGCCGCATGTATGATTTTTCTGGCGCCCTCTTTTCATTTATCAAGCCA
TGTTTGTTGGTTTGGCTGCTTCCGCGGGGGGTTGGGGTACAGCGTTTGGG
AGAGTTGGGGTTAAAATTGGGTTGAAGCGTGTGGAGTAATGTGACGATCT
TGGCAGCCGGCTGGCGTCAAAGGGTGCTGCTCATTGCAAGTTTGCTTCTG
GAGTGTCTCCTGGGTCGACCCCTGGAATCGAACTCTCGGCCCCCTTTGCG
CATCCGCTGTTTTTCAGCCACGGCATCCAACTGCTTTGAGTTGAGTGGGA
GGAGGAGTTGCTTCTGCTTGGGATGGCGAGTATTCCATGACAAAGATGGT
TTTGGCAGTGACTTCCTGTAGCAGCGATCGTTGTTGAGTCTGTCAACGAA
GAATGCGAAATACTCGATTGGAGGAACTGAGAAGGCATTTGGCAGTCCCG
TAACAGCTTCGACGCGGAGAGCGGTGAACAGTAGGGGGCATGTTCACCGC
TCTCAGGGCGTGGGTAGGTTTGATGAGATCGCAACTCGTTTGGTTGATGC
GGGACAAAAGTTAGTTTGGTTTGGGTGTTGATAGACTCTACAGGAGTGGC
CACATTCTTCTTGTTTATATTTGGTGATATCGCGTTCGTTCGCAATGTGT
CGTTTTCCAGTACACATAGAAAAGCTGTCACTGCTCCACGGTACGTTTAC
TTGCTTGCATTTTGTGTATTTGTGTTGTTTCACACCCAGTAGAGTAATAG
CATGTAAACGAGAACCTTTATTTGTCCGTCCCTTTCGTGTGTGCATGTTG
CGCTCTGTTTAATATGTCACGCTCAACGTACAGAGGGTGCACATGTTGTA
GCGGTCGACGACCGGGCTACCTTTGACGCCCCGTGATATCTCCCGATAAT
GAAGATACTGTTGTACGCATGGAATCCTTACCCTCACTTCTTCGTGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1623:17350..24147+

>mRNA_L-elsbetiae_contig1623.4262.1 ID=mRNA_L-elsbetiae_contig1623.4262.1|Name=mRNA_L-elsbetiae_contig1623.4262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2616bp|location=Sequence derived from alignment at L-elsbetiae_contig1623:17350..24147+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTACAACATGGCGGTGCCTGGAGGCAAGACCCTCAGATGGCGTAC
AACATGGCGGTGCCTGGAGGCAAGACCCTCAGAACCAATATGATGACCCG
GCTGATCCTGTTGGGGATGGTGCCCCTGTGTGCCACCGGAAAAATCCAGG
GCGTGCTGGGCCGAGAGGAGAACCAATATGATGACCCGGCTGATCCTGTT
GGGGATGGTGCCCCTGTGTGCCACCGGAAAAATCCAGGGCGTGCTGGGCC
GAGAGGAGGTGGATGGCCGTCTTTTTCTAAGGAAGGAGAGCGGCCGGAAC
CTCCAGGCCGGTGGATGGCCGTCTTTTTCTAAGGAAGGAGAGCGGCCGGA
ACCTCCAGGCCGAGTCAGGCTTCGAGTGCGGCGGTGCCGGCTTTCCCGGC
GTCCGCTCCTCGGAGGGCACCGGGAAAATATGTTGTGCTGAAGAGTGTGG
CACGTGCGGTGGGTCCGGTTGCGCTGGGTTCGCCACGGAGCACAATATGA
CTGCGAGCCACTGCTGTACCACCGAGATCAGAGATTTGGGCGTCATGTGC
AGCGACACTATGGAGGCTCCGTGTATCATCGCACACCAGTCAGGCTTCGA
GTGCGGCGGTGCCGGCTTTCCCGGCGTCCGCTCCTCGGAGGGCACCGGGA
AAATATGTTGTGCTGAAGAGTGTGGCACGTGCGGTGGGTCCGGTTGCGCT
GGGTTCGCCACGGAGCACAATATGACTGCGAGCCACTGCTGTACCACCGA
GATCAGAGATTTGGGCGTCATGTGCAGCGACACTATGGAGGCTCCGTGTA
TCATCGCACACCTCTCCACCCACGACGAGCCGGAGCCGGAGACGCAGGCG
GTGCAGTTGGCGGACTACGAGCTCGTGAGGTGCAGCGAGATGGAAACGGC
GGATGGTGGAGAGACTGCCTTTTTCTACACCAAGCAGGACGAGAATCTCA
TGCTCTCGTCTCCACCCACGACGAGCCGGAGCCGGAGACGCAGGCGGTGC
AGTTGGCGGACTACGAGCTCGTGAGGTGCAGCGAGATGGAAACGGCGGAT
GGTGGAGAGACTGCCTTTTTCTACACCAAGCAGGACGAGAATCTCATGCT
CTCGACCTGCTCTGACGAGTGCGCCGAGCAGGCCGCCCTGTACTTCGCGG
TGCTTGAGGGCGACGTGTGCGGGTGCGGCGACTCCGAGGAGTTCCTCTCG
GCCGACGACAGACCTGTCGGTGAGTGCGACATGGCGTGCCCGGGGAACGC
CGCCGAGATCTGCGGGGGGCGGACGTCCTACGTCCTCTACGAGATCTTCG
CGGGCGAGCCCGGAAGCAGCGACGATGGCGAGAGCGGGACAGGCAGCGGC
AGCGCCAGCGGCAGCGCCAGCGCGGGCGAGACCGGCGATGACGGCAGTGA
CGGCGAGAGCGGTGGAGACGGCGACCACCTGCTCTGACGAGTGCGCCGAG
CAGGCCGCCCTGTACTTCGCGGTGCTTGAGGGCGACGTGTGCGGGTGCGG
CGACTCCGAGGAGTTCCTCTCGGCCGACGACAGACCTGTCGGTGAGTGCG
ACATGGCGTGCCCGGGGAACGCCGCCGAGATCTGCGGGGGGCGGACGTCC
TACGTCCTCTACGAGATCTTCGCGGGCGAGCCCGGAAGCAGCGACGATGG
CGAGAGCGGGACAGGCAGCGGCAGCGCCAGCGGCAGCGCCAGCGCGGGCG
AGACCGGCGATGACGGCAGTGACGGCGAGAGCGGTGGAGACGGCGACCTG
CCCACGTGCAGCACTGGTATCACTGGAGTTGAGTCCGAGAGCGGCGACGT
CTGCTGCGACTACAATGCCCACGTGCAGCACTGGTATCACTGGAGTTGAG
TCCGAGAGCGGCGACGTCTGCTGCGACTACAAGTGCGTCACGTGCGGCGG
TGACAAATGCCGCGGCAACGGCGATTGCTGCGAGCATACCATACAGTTGA
AGCACGGCCTGTGCTCCGACACCGGCACGGCTCCCTGCGTCTACAACGAG
GGTGCGTCACGTGCGGCGGTGACAAATGCCGCGGCAACGGCGATTGCTGC
GAGCATACCATACAGTTGAAGCACGGCCTGTGCTCCGACACCGGCACGGC
TCCCTGCGTCTACAACGAGGCCGACATCGACACGCCGGCGCCGGTGGCGA
TCCCCGAAGTCGAGCCGCGCGAGACGCGCTATTGCAGCAACGGCCTTCCG
GGCGTCGAGTCTGATGACGGTATCACCTGCTGCCTGGAGGCCTGCGTCGG
TTGCAGCGAAAAGGATGAAGAATGCGTTGGCGCCAGTGCCTGCTGCGCAC
AGTTCATCAAAGAACAGGAAATCTACTGCCAGGATGAAGGCGTTGAAGCT
GGCCCGTGCATTATGTGACCGACATCGACACGCCGGCGCCGGTGGCGATC
CCCGAAGTCGAGCCGCGCGAGACGCGCTATTGCAGCAACGGCCTTCCGGG
CGTCGAGTCTGATGACGGTATCACCTGCTGCCTGGAGGCCTGCGTCGGTT
GCAGCGAAAAGGATGAAGAATGCGTTGGCGCCAGTGCCTGCTGCGCACAG
TTCATCAAAGAACAGGAAATCTACTGCCAGGATGAAGGCGTTGAAGCTGG
CCCGTGCATTATGTGA
back to top