mRNA_L-elsbetiae_contig1623.4261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1623.4261.1
Unique NamemRNA_L-elsbetiae_contig1623.4261.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1623.4261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1623contigL-elsbetiae_contig1623:5970..12087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1623.4261.1prot_L-elsbetiae_contig1623.4261.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1623 6023..12005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.1032917-UTR-L-elsbetiae_contig1623:5969..60221622815670.1032917-UTR-L-elsbetiae_contig1623:5969..6022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 5970..6022 +
1691683027.336822-UTR-L-elsbetiae_contig1623:5969..60221691683027.336822-UTR-L-elsbetiae_contig1623:5969..6022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 5970..6022 +
1622815670.1487825-UTR-L-elsbetiae_contig1623:12005..120871622815670.1487825-UTR-L-elsbetiae_contig1623:12005..12087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 12006..12087 +
1691683027.374466-UTR-L-elsbetiae_contig1623:12005..120871691683027.374466-UTR-L-elsbetiae_contig1623:12005..12087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1623 12006..12087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.1163433-CDS-L-elsbetiae_contig1623:6022..60431622815670.1163433-CDS-L-elsbetiae_contig1623:6022..6043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 6023..6043 +
1691683027.3465946-CDS-L-elsbetiae_contig1623:6022..60431691683027.3465946-CDS-L-elsbetiae_contig1623:6022..6043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 6023..6043 +
1622815670.1290238-CDS-L-elsbetiae_contig1623:6559..67581622815670.1290238-CDS-L-elsbetiae_contig1623:6559..6758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 6560..6758 +
1691683027.3551219-CDS-L-elsbetiae_contig1623:6559..67581691683027.3551219-CDS-L-elsbetiae_contig1623:6559..6758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 6560..6758 +
1622815670.1389184-CDS-L-elsbetiae_contig1623:12000..120051622815670.1389184-CDS-L-elsbetiae_contig1623:12000..12005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 12001..12005 +
1691683027.365511-CDS-L-elsbetiae_contig1623:12000..120051691683027.365511-CDS-L-elsbetiae_contig1623:12000..12005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1623 12001..12005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1623.4261.1

>prot_L-elsbetiae_contig1623.4261.1 ID=prot_L-elsbetiae_contig1623.4261.1|Name=mRNA_L-elsbetiae_contig1623.4261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MITHPATQQLCTRKAGKNRTSRGAEPSVLRTACTAAAVAPTLPPLARVKG
ETKHGYVRWRVRRQRRSRRLLSPD*
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mRNA from alignment at L-elsbetiae_contig1623:5970..12087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1623.4261.1 ID=mRNA_L-elsbetiae_contig1623.4261.1|Name=mRNA_L-elsbetiae_contig1623.4261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6118bp|location=Sequence derived from alignment at L-elsbetiae_contig1623:5970..12087+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTTAACCGACGTGTGCTGGCTGTTCCACAACAAGACATCGCGCTCAGT
TGAATGATCACCCATCCAGCGACTGTAAGTGCTGAGCTGCCAGACTGTGA
CTGACCGCCTGTCTTTGTTGGCGTGCTACTGTTAATCAGTAACGAGTCGG
GCGTGCGTAGACGATAGGTAAGTACAGAAAGCGAGAGAGAGGAAACGTGG
CAGCCTATTGGATCGGATGTTGATGTTGGTTTTGCGATGTGCTGTGGAGC
GCTTGTTGTTCGTGTTGCGTCAGAAGGAATCCACAGCAGGTTTTTCGTGA
GTCTCGTTCGCTGTCAGTGTGTCTGTCGCCTTTCTCGGGTGCTCAAGAGA
GCTATCCCCACACAACGCCGCTCTTGTGGTCGGAAATAAAAGCTGCTCCA
ACTGCTGACATCACACGCCACGATCTATTGTAGCACATACATCTGCCTCC
GAGAGCGCGACAGCCTCCTTTGTGTCACTGTGAAAATGGGAATAAAAACC
AGACTCACAGCCGATGCCCTCCTCCATTTGTTCCCGTTATTTTTGTGTGT
GTTACACGTACCTGCCCCCGACCCCGACCGGTCAAAACAGCAGCAGCTGT
GTACACGCAAGGCAGGGAAGAACCGAACCTCGCGTGGCGCAGAACCTTCT
GTCTTGCGCACTGCTTGCACTGCTGCTGCTGTAGCACCAACACTACCGCC
CTTGGCGCGGGTGAAGGGAGAGACAAAGCATGGCTATGTCCGGTGGCGGG
TACGGAGGCAACGGCGGTCCAGACGACTACTATCACCAGGTGAGCTTGGG
CCCAGGCGCGCGAATCCTTGGCTGAGGGGCGCGCCCACCGCCGTGAACTA
TTGTTTGGTGTCGCAAACGTCATACGCACACAGGCCTGGATCTCGGCAAA
ACTCTCGACTCTTTTCAGGAATAGTTTCAAGCAGCTGTTGGCCTCACGCA
TTTGCCAGTTGTCGTCGAATCAAGACCGAGCTGGCAATCCACCAGCAGCA
GATCATGCCAGGATACGTAGAGAGAGATCGCAAACCCTGGCACGTCACGA
CCCATATCTAGCCAATTAGCTTATTTCTTAGTTTCGGCAGGGGGCCCGCA
AAATGGACATGTTTTCCCGCCACACCCGGTTCACGAAACAGAAAAGCACC
TCCTCATTCAGAACCAGGAGACGCTAGTGTACTTGTAGCACAGCAGTGGA
CTACTGTTTGCTCCGGTTTTCTCTGATCGTTCACTCCGGTGTGTTTGTGT
GTGTGTACCGTACTATTTATATAGATCTAGTGATCAACGTATGCATACTA
CGCCGACATGAAAATATTACAATTAAATAGATAAACAAACTATTTACGTA
TGTAGAGTGTAAACCGTATATTACATACGTTGAAAAAGGGCATCGGCCAA
AAACAAGGTATACCTTGTGGTCAGGCGGCTACAACAGGGTACATGCGGTA
CCGAACTTGAAGGTGCAAGGCCTATGTATGTACCACAAAGCGCAACTTGA
CGAAGGTTCTTGTAGGCTGTCCCATGGCATACATATGTACATATAGATCT
ATACGACACACGAGAAATGGCTTTATGCCTGATTCGCGGAGAAACCCTTC
GGAGGGTAGAAAAATGCCGATGAGACAGTAGTCGTAGCCTTCGCACGTTT
TACTGGAAGAAATTTATGGGATAAGTAAGTGTGATGTGTCCTTCCCATTT
ATTTTGGCGACAGTCCCCCCATGTACTACACCTTGCGGTGTACTTATCTA
GAGGTACTTCACTTTGCAGTGCCATTTGTCTGTACAACTAGAACCAACCG
GGGCCACACAGGAGGGGGTGAACACTGGGGCTTTTTCTTCTTCTTTTTTG
TTTTTGTTTTGCCCTACCTTCCTCCTGCGGTGCTTGCCTTCATTTTTGTC
GTGAGAGGAGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTACGTCGAA
GTTTGGTACTCACGAGCTTTTCAGCTTTAATCGCTTTCACCTGCAGAGTC
GCAAAAGAGACACTTCTGCTTGGGATTGAACTCCAGACTTTGCTGCTAGT
GGGTTCGAGGTTAAACCACTGCCAACATAGACCACCGTGGCGACCGGTAT
GGAAACAGCTAATGGGGGGTCGGTTTGGAGGTTACGGAACCCCTGTCTAT
TATTTCATAATTTCCTCATAAGACAGGAATTTGAAATTCTTCGCGAAAGG
CGGTCCCGATGAGAAATGATGCACATCGGGACCGAAAACGCATCGGGACC
ACCGATTGCTCGCCCTCCCGCTCACGGATCGCACTCTAGTCTTCACAACA
CAAGCCCCATGTTGATGAGCGTCACATACACATGTCAAGCAGAGTCTCTT
TTGGTGGCTTGTGGGGCAAATACGAATGAGCAACGGCCAGCTGAGGGGAT
CTCAGAAAACGTTTCTTAGTGAGGAAACCTTTTCTCACCAAAAACGTCTT
GTGACCCTATCCGACGGCGGTGAGAAATGGTGCAACAGCCCGAGCACTCC
AGAAATACCTCCAGAAATACCAACACCCACACCGATCGCTCGCCATGTAT
CCTGCTCACAGACCGCTCTTAAATTTTGAGAACATGAGCTTCATGTTACT
GATCGTGATCACCCGAGGCAGATTTGCTCTCGTTAGACTACTATCTTGTG
TGGCAAATGCGAGGAACCAACCTGTTTCTGGGCTCGAATTAAGCATAATT
TCTTAACTGCGTCAGGATTTCTCGGCGAATGAGGCAGTCTAAAACCATTT
CTAAAACCATTTCTCGTCGACTTTTCTGAACCCATATGAACTGGCCCAGA
GTCTAACCCGTGCACAGCGTTACTAAAGCCAGCACTCTGTTGTCTACGGA
GTATATCCTATATGCTCGGGGGCGGGACAGACACTCCGCCGTGCAACTGC
GCACGGCTGCAGTTAACTTCGTCTGTACAGTAGTAGAGACTTTTCAGTTG
GCTTGTTGGAGGTAGCGTAAGTATGGCAAACTTAATTATTTGGTTTAGGG
AGCATCCGCACGAGAAAATATGAGGAGGAGGGGCACGTTTTTCGTGGGCT
CAACATCAGGTCGCACTAAGGCCCTGTTCCCGGACTAACAGCCCCGGTTT
CCGGCTAAAAGAGGGTGTGGTGAACGAGCGGCAAAACAAGGAGTTGAGTG
GCCACGCGAAGGTATACCGTAATCATGCAAAGGTTCGCACCCCCGTGTTA
GCGTTTTTTTACAGCGTATTTATCCACAACCAGGAGGGTACCACTGCTGA
AAAGGGTGGTTTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATCA
GTTGGTGTTCGCACCCTCCTGGTCGTGGAGAAATACGATTTAGAAAAATG
CTAACACGGGGGTGCGAACCTTCGCATGATTACGGTACCTTGTACTTGTC
CGCCCAAGAATTACCTCGTCCGAGCGTTGGCAAACGTGTGGGTAGAAAAA
AAAAAAACTTACCTTGTGTTCCGAGGGTATGTTATTTTATTTTTATTTTT
ATTTTTATTTCTTACCTTCTGTTGGTGGGCGGTATAATCGGGGGAAGGAC
TATGTAGACCTGTGCGGGCCTGGCCGGCGAGAACCCGGCGAGAACCCGGC
GCGGAACCCCCCGGTTTTGTTGGGGTACCAAGATAGTGGTGTTGGCTGTG
TTCCAGTTTTGTTTCTACCTCAGATAGTGTGTAGAGGGGAGCGGAGGGCT
CCAGATTCGAAATCTGTTTTATTGTTGCTTTGCTGGCCCTTCGGGTCCAT
TTTATTTTTCGTGTACCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGG
GAATTGACCGCATCAAGTATTGGGTTAGTACGGACATTGAGAGGTACTGG
ATGGAGAGATCGGAACGGTTTTTAATGTGAAGACAACACACACACACACG
TACCGTATGTTGGCCGTTGCCCCTTGAGGAAAACCCATCATGATTGTTCC
CGTCGGCGAGTAGGGAGTACACTTCTCCATACACACCGCGAAACTGGCCG
GACCGTTCCGCAAAAGCGTGGAAACCGAGTTGGTGGTGTCGAATCTGGCA
TGATGCCTTTCAAACGAGACGAGGGAGAGTTCGGATCGTGCTCTCGTTTG
ACAAAAACTGCTGACGCAAATTAAGTACACATGCATCCTACACAGCTGCG
GGCATCGCAGGCAGATCCCGGCTCATCCTTGAATAAGTCTGACTCGGCCG
TTCGTCTGTCGCGTGGATCGCATGTGTGCGCGTGGCGAGCTTTCACTTGT
GTGGGCGGAGTAGGTGCTTGAGGTGGATTGGCCGAAGTCCGGCCGCTCAA
CTTTGATTGGCCACATCTTTCTTTCCACAAAGTTTGCAAACTTTCGCTCC
CGATCGGGCGATTTTTGTGGAAAGTCAAAATTATGAGTTCGCAACTTTTT
GCCTTCATACAGAGTGTCCATGAGAAAATTTGCAGAGGAAAGGTCACGAA
ATTTGACTTTCTTCGCAACTATCTGCTCCCATGAAAACCGGTGTTGTGGC
AACGAAAATTGCCTCAAATTGTTTTTTTTAATTCTGGTGTATGGCTCCCC
GTTGGGAGAGGGAGAAAGGGATCTCGAGGCACGCACAACACTTCTTGCGT
CACCAACCCAAGCCACGGCGATCACTGCTGTCTTGGGCCGTCGCTCGTTG
ACTGCCACCAAGCCTTGTAGGCTGTACGCTGCATACTTGGGATGATGTTT
TTCCTTTGTTAGAGACTTGGTGTGGTGACACAAAATCATGGTTCGTGTGA
CTAGTGCGTCCGCGAAACAACACGGTTTTTGGGTGCATATTTCGTCTGCT
GTTGTTCCAAACGGATCTGTATTTTGTCCGCAACATCAACCGGTCCTCGC
CACAAACAAATCGCCTGGCAACAAAATCCCCACGAGCATGGAGCGTAGGC
CTGCAAGGTTCAGTAACAATGTCAACTATGGCCGGAGACTTCATGGGTGG
TGTGGTGAGGGTAACGTGAGACTCCATTTCATGGGGGTTCGAGACCCCGA
TACCCCCCCATACCCCCGCCCCCCCTTCGATAAAGGCGCACGCCCCAGAG
CAAGAACACCGTTTCGTGCGGCCATAAGAAAGGCCGGATCCTCTGGCAAC
GAAATTTTGCCACCAAACGGAATTTTTGTTCTGGTTCGTTCGTGGCTCCC
CCTTTGGAGGGGGGAAGGGAATCGGCGAGACAGCACGACATTTCTTGGGT
CGCCAACCAAACCACGGCGATAATGCTGTCTCAGGCCATAATAGCTCACG
GATTGACATAAGACCTTCTTGGCTACACTCTCCATACCTGTGGGAGGCTT
GAGATTTGTTTTTCGTGATCATTGGCTTTGTGTGGCTCGAGGGGAAGTCG
GCGCGCGATCGAAAATCACATTTCGTGCTACGTTTTGCCACACGGATCTG
TATCTTGTCCATAACATGAACCATCAACCGATCCCACCACAAAAAAATTG
CCTGACAACAAGGGCTAGCTGCGAAGAATCCTACGAACATGGGCCGTAGG
CCTGTTCATTTTTATGGCAATCCGTCAGCTATGGCCGGACAGTTCATGGG
TGGTGTGGTGACTGCAGTGCGTGTGTCCATTTCGTGGGGTTCGACGCCCC
AACACCCCCCCTTCGGCTCAGGGGCCCGCCCCAGAACAAAATTCCGTCTA
CTGTAGCGGCGAAATTCCTTCGCCGCGAGATCCGGCCTATTGTAGGAACC
CGCTATTGCACAGCCGAAGAGAATGAGTACCCTACAAGGAGGTGTTGTTG
GACACAAGCCCCCAAATACATTTCTCGCCCCTGTACCTCATCGTCTCTTT
TCTCTCTCTCTCGCTGACAATCTTAACTCCACACTCTCCAACCCTAAAAC
CCAACGAAAACTCAAACCAAGTGCGTCTCGGCGGAAAAAGAGAGGAACAC
ACAGCGGTCCGTGTTGTCAATTGTTTCGATGACATCACCAAACTACCGCT
GCTTTTTGTCCGTGCTCTCTGAATGTTCCGGTTCGGGGCGGGGGGGGGGG
GGCATCATGGGCTAAATTATCACGACGACAGATTGACAACGGCAACCACG
GCGGCGGTAGACCCCACACGCACGGCAACAGCAACGGGGGCCCCGGGCCC
GGGGCCGTTGGCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1623:5970..12087+

>mRNA_L-elsbetiae_contig1623.4261.1 ID=mRNA_L-elsbetiae_contig1623.4261.1|Name=mRNA_L-elsbetiae_contig1623.4261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig1623:5970..12087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACCCATCCAGCGACTATGATCACCCATCCAGCGACTCAGCAGCT
GTGTACACGCAAGGCAGGGAAGAACCGAACCTCGCGTGGCGCAGAACCTT
CTGTCTTGCGCACTGCTTGCACTGCTGCTGCTGTAGCACCAACACTACCG
CCCTTGGCGCGGGTGAAGGGAGAGACAAAGCATGGCTATGTCCGGTGGCG
GGTACGGAGGCAACGGCGGTCCAGACGACTACTATCACCAGCAGCAGCTG
TGTACACGCAAGGCAGGGAAGAACCGAACCTCGCGTGGCGCAGAACCTTC
TGTCTTGCGCACTGCTTGCACTGCTGCTGCTGTAGCACCAACACTACCGC
CCTTGGCGCGGGTGAAGGGAGAGACAAAGCATGGCTATGTCCGGTGGCGG
GTACGGAGGCAACGGCGGTCCAGACGACTACTATCACCAGATTGAATTGA
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