mRNA_L-elsbetiae_contig16172.4243.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16172.4243.1
Unique NamemRNA_L-elsbetiae_contig16172.4243.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16172.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16172contigL-elsbetiae_contig16172:699..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.472948-UTR-L-elsbetiae_contig16172:698..7821622815668.472948-UTR-L-elsbetiae_contig16172:698..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16172 699..782 +
1691683026.2647462-UTR-L-elsbetiae_contig16172:698..7821691683026.2647462-UTR-L-elsbetiae_contig16172:698..782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16172 699..782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.4872017-CDS-L-elsbetiae_contig16172:782..10821622815668.4872017-CDS-L-elsbetiae_contig16172:782..1082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16172 783..1082 +
1691683026.2755003-CDS-L-elsbetiae_contig16172:782..10821691683026.2755003-CDS-L-elsbetiae_contig16172:782..1082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16172 783..1082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16172.4243.1prot_L-elsbetiae_contig16172.4243.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16172 783..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16172.4243.1

>prot_L-elsbetiae_contig16172.4243.1 ID=prot_L-elsbetiae_contig16172.4243.1|Name=mRNA_L-elsbetiae_contig16172.4243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MDPRRGFVFRLRRDGGGLAERDAFCRGPLLSAFQGSRLSRRGMYLAYAKQ
RSNPILPKCAARLHMDRNSPHTQARTISPAYVIHMVRMIMIDDSGFSGP*
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mRNA from alignment at L-elsbetiae_contig16172:699..1082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16172.4243.1 ID=mRNA_L-elsbetiae_contig16172.4243.1|Name=mRNA_L-elsbetiae_contig16172.4243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig16172:699..1082+ (Laminarionema elsbetiae ELsaHSoW15)
CCTACCATTAGCCCACCCTTTCCAAACTGGGGGCCCTGCTGCAGGAAAAG
CCGCCACACTTACAAGAAGAGATGATGGTGGTGTATGGACCCAAGGAGGG
GGTTCGTCTTTCGTTTAAGAAGAGACGGGGGAGGGCTGGCGGAGAGAGAC
GCTTTCTGCCGCGGCCCGCTTCTGTCCGCGTTTCAAGGTTCCAGGCTCTC
AAGACGTGGTATGTACCTAGCGTATGCAAAACAACGTTCAAATCCGATTT
TGCCGAAATGTGCTGCACGTCTACATATGGATAGAAACAGTCCTCACACG
CAGGCCCGGACCATCTCCCCCGCGTACGTAATACATATGGTACGCATGAT
CATGATCGATGACAGTGGTTTTTCCGGACCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16172:699..1082+

>mRNA_L-elsbetiae_contig16172.4243.1 ID=mRNA_L-elsbetiae_contig16172.4243.1|Name=mRNA_L-elsbetiae_contig16172.4243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig16172:699..1082+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCCAAGGAGGGGGTTCGTCTTTCGTTTAAGAAGAGACGGGGGAGG
GCTGGCGGAGAGAGACGCTTTCTGCCGCGGCCCGCTTCTGTCCGCGTTTC
AAGGTTCCAGGCTCTCAAGACGTGGTATGTACCTAGCGTATGCAAAACAA
CGTTCAAATCCGATTTTGCCGAAATGTGCTGCACGTCTACATATGGATAG
AAACAGTCCTCACACGCAGGCCCGGACCATCTCCCCCGCGTACGTAATAC
ATATGGTACGCATGATCATGATCGATGACAGTGGTTTTTCCGGACCATGA
ATGGACCCAAGGAGGGGGTTCGTCTTTCGTTTAAGAAGAGACGGGGGAGG
GCTGGCGGAGAGAGACGCTTTCTGCCGCGGCCCGCTTCTGTCCGCGTTTC
AAGGTTCCAGGCTCTCAAGACGTGGTATGTACCTAGCGTATGCAAAACAA
CGTTCAAATCCGATTTTGCCGAAATGTGCTGCACGTCTACATATGGATAG
AAACAGTCCTCACACGCAGGCCCGGACCATCTCCCCCGCGTACGTAATAC
ATATGGTACGCATGATCATGATCGATGACAGTGGTTTTTCCGGACCATGA
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