mRNA_L-elsbetiae_contig16169.4237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16169.4237.1
Unique NamemRNA_L-elsbetiae_contig16169.4237.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16169.4237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16169contigL-elsbetiae_contig16169:162..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size701
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16169.4237.1prot_L-elsbetiae_contig16169.4237.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16169 162..1766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.0162942-CDS-L-elsbetiae_contig16169:161..4491622815668.0162942-CDS-L-elsbetiae_contig16169:161..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 162..449 +
1691683025.932575-CDS-L-elsbetiae_contig16169:161..4491691683025.932575-CDS-L-elsbetiae_contig16169:161..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 162..449 +
1622815668.0312245-CDS-L-elsbetiae_contig16169:790..8681622815668.0312245-CDS-L-elsbetiae_contig16169:790..868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 791..868 +
1691683025.9414787-CDS-L-elsbetiae_contig16169:790..8681691683025.9414787-CDS-L-elsbetiae_contig16169:790..868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 791..868 +
1622815668.047096-CDS-L-elsbetiae_contig16169:1433..17661622815668.047096-CDS-L-elsbetiae_contig16169:1433..1766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 1434..1766 +
1691683025.9496465-CDS-L-elsbetiae_contig16169:1433..17661691683025.9496465-CDS-L-elsbetiae_contig16169:1433..1766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16169 1434..1766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16169.4237.1

>prot_L-elsbetiae_contig16169.4237.1 ID=prot_L-elsbetiae_contig16169.4237.1|Name=mRNA_L-elsbetiae_contig16169.4237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
HTWRRQGYPERVYVLSVFHKLSQTWLTSMGPFSLAQRPSTPRPPTRRVQQ
RQVDRIAGATPPPSSASSPPLDTIMEERDPFDETSGAEELVLATAEASIQ
TAKNRQLATREGIAITHSRLLQRDNWFSIRADLDRLLDRTRSLLEELGLE
VGEDVASPMDEEDAEASPSPLQRQEHGDPLGEAPSVMLQQHTQVPAPLPQ
GQTLPRKLAPVLAASHRVGSVAGSHVVLSAAAG
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mRNA from alignment at L-elsbetiae_contig16169:162..1768+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16169.4237.1 ID=mRNA_L-elsbetiae_contig16169.4237.1|Name=mRNA_L-elsbetiae_contig16169.4237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1607bp|location=Sequence derived from alignment at L-elsbetiae_contig16169:162..1768+ (Laminarionema elsbetiae ELsaHSoW15)
CATACGTGGCGCAGACAAGGGTATCCAGAACGGGTTTACGTCCTCAGCGT
TTTTCATAAGCTCTCGCAAACTTGGCTCACCAGTATGGGCCCGTTCTCTC
TCGCGCAGCGTCCTTCTACGCCTAGACCCCCGACTCGCCGCGTTCAACAG
CGGCAGGTTGACAGGATCGCGGGAGCCACCCCGCCCCCATCCTCCGCCTC
CTCCCCACCGTTGGACACGATCATGGAGGAGCGCGACCCCTTCGACGAGA
CTTCAGGCGCGGAAGAGCTGGTTTTGGCGACGGCAGAAGTGAGAGGCGCT
TTGTTGCCGCGATTTCTTCAGTGGCCCGGTCGTCCTTGGCTGGTGGTAGT
TGGCGGTGGGGCTGCCATCGAACCTTCCCGCCCCCTGGCGGGTTCGAAAT
CGGATAAAGCTCGATACCAAACCGTTGGCAGAGCTCCGAAAGGTTTGCCA
AGCTGTTCATGTTGTCAGACGAACTGATATTTAATCAAAGGCTAGACACG
TAGACCAGATGAGATCCGGAAAATTATGACTTTACTTTAATGGGCAGGTG
AGAATGTACAGAATATCACAGCGATGATGCTGTGCGATATGTTTCCTTTC
ACCCACTTCTCCGTTCCTTCCTAAACTAGGCGAGCATCCAGACCGCCAAG
AACCGTCAGCTGGCCACCCGGGAGGGCATCGCGATCACGCACTCTCGTCT
CCTGCAGGTGCTCAAACGTATTGTGTATGTATCTCGTCAGTCAGGAAGAC
GCCATCTCACGCGAAAGCTGGGAAAGCTGCGCGTGTGTCTTGAACGCTGC
ACTCAGCCCTTGCAGAAAAAGCCATAGCTGTCTGCCGCTTTCGCTTCCTC
GAAGACGCGGTGTCTACGTGTTACTTTTGCAAGACCGCTCTCCGTGTGGT
TTTCATCTGAATTTTCTATACTTGTATAAGACGGGCGGTCTCCGTCACAC
TCGGGACTATACCCAAGATTCCATCGCCGCGCCCACAACTCGGAACCAAC
GTCCATAGAACCGAGACATCAGGCACAATGACCACCCCCAGGCGAACCCT
AACTTAGCTACAACCAACAGAGGACCACGACGATTCGTGTGCTCCACCTT
CCCCGGCTTCGAGCAGGCGATTCTTGCCCGACGAACGATGGTCACAGCCC
TCTCTCTCTTGTCTTGTGTTGGCAAAACATATCTGCACTCCCACCTCTAT
TTCGTCGCCCCAAAATACGCAACCCCAACCGAACCCTTCACGAGACGCGG
CCTGCCATCCTGCACCTTGCAGCGCGACAACTGGTTCTCGATTCGAGCCG
ACTTGGACAGGCTGCTCGACCGCACGCGATCCCTCCTCGAAGAGCTAGGA
CTGGAGGTGGGCGAGGATGTAGCGAGCCCCATGGACGAAGAAGACGCGGA
GGCGTCTCCTTCACCTCTCCAACGGCAGGAGCATGGGGACCCGCTGGGCG
AAGCACCGTCAGTAATGCTTCAACAGCATACGCAAGTCCCGGCCCCGCTG
CCGCAAGGTCAAACCCTTCCCAGAAAGCTTGCCCCGGTGTTGGCAGCCAG
CCACCGCGTCGGCAGTGTTGCCGGGTCTCATGTAGTGCTGTCGGCGGCAG
CAGGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16169:162..1768+

>mRNA_L-elsbetiae_contig16169.4237.1 ID=mRNA_L-elsbetiae_contig16169.4237.1|Name=mRNA_L-elsbetiae_contig16169.4237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig16169:162..1768+ (Laminarionema elsbetiae ELsaHSoW15)
CATACGTGGCGCAGACAAGGGTATCCAGAACGGGTTTACGTCCTCAGCGT
TTTTCATAAGCTCTCGCAAACTTGGCTCACCAGTATGGGCCCGTTCTCTC
TCGCGCAGCGTCCTTCTACGCCTAGACCCCCGACTCGCCGCGTTCAACAG
CGGCAGGTTGACAGGATCGCGGGAGCCACCCCGCCCCCATCCTCCGCCTC
CTCCCCACCGTTGGACACGATCATGGAGGAGCGCGACCCCTTCGACGAGA
CTTCAGGCGCGGAAGAGCTGGTTTTGGCGACGGCAGAACATACGTGGCGC
AGACAAGGGTATCCAGAACGGGTTTACGTCCTCAGCGTTTTTCATAAGCT
CTCGCAAACTTGGCTCACCAGTATGGGCCCGTTCTCTCTCGCGCAGCGTC
CTTCTACGCCTAGACCCCCGACTCGCCGCGTTCAACAGCGGCAGGTTGAC
AGGATCGCGGGAGCCACCCCGCCCCCATCCTCCGCCTCCTCCCCACCGTT
GGACACGATCATGGAGGAGCGCGACCCCTTCGACGAGACTTCAGGCGCGG
AAGAGCTGGTTTTGGCGACGGCAGAAGCGAGCATCCAGACCGCCAAGAAC
CGTCAGCTGGCCACCCGGGAGGGCATCGCGATCACGCACTCTCGTCTCCT
GCAGGCGAGCATCCAGACCGCCAAGAACCGTCAGCTGGCCACCCGGGAGG
GCATCGCGATCACGCACTCTCGTCTCCTGCAGCGCGACAACTGGTTCTCG
ATTCGAGCCGACTTGGACAGGCTGCTCGACCGCACGCGATCCCTCCTCGA
AGAGCTAGGACTGGAGGTGGGCGAGGATGTAGCGAGCCCCATGGACGAAG
AAGACGCGGAGGCGTCTCCTTCACCTCTCCAACGGCAGGAGCATGGGGAC
CCGCTGGGCGAAGCACCGTCAGTAATGCTTCAACAGCATACGCAAGTCCC
GGCCCCGCTGCCGCAAGGTCAAACCCTTCCCAGAAAGCTTGCCCCGGTGT
TGGCAGCCAGCCACCGCGTCGGCAGTGTTGCCGGGTCTCATGTAGTGCTG
TCGGCGGCAGCAGGGCGCGACAACTGGTTCTCGATTCGAGCCGACTTGGA
CAGGCTGCTCGACCGCACGCGATCCCTCCTCGAAGAGCTAGGACTGGAGG
TGGGCGAGGATGTAGCGAGCCCCATGGACGAAGAAGACGCGGAGGCGTCT
CCTTCACCTCTCCAACGGCAGGAGCATGGGGACCCGCTGGGCGAAGCACC
GTCAGTAATGCTTCAACAGCATACGCAAGTCCCGGCCCCGCTGCCGCAAG
GTCAAACCCTTCCCAGAAAGCTTGCCCCGGTGTTGGCAGCCAGCCACCGC
GTCGGCAGTGTTGCCGGGTCTCATGTAGTGCTGTCGGCGGCAGCAGGG
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