mRNA_L-elsbetiae_contig16163.4236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16163.4236.1
Unique NamemRNA_L-elsbetiae_contig16163.4236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.410e-50
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPPQAN 310
            +NQDELK+L RC+REA ERL+ G SVVIDATN  R TRAGWL LARQHGA ARCI+LTTPKEACFHLN FR C+PWSPE ERRKVPDVVIHTWFKY++PP  N
Sbjct:  515 INQDELKSLKRCEREAGERLRGGRSVVIDATNAGRGTRAGWLDLARQHGATARCIYLTTPKEACFHLNAFRGCDPWSPEGERRKVPDVVIHTWFKYVDPPHKN 617          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A7S1S7L6_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S7L6_ALECA)

HSP 1 Score: 96.7 bits (239), Expect = 2.290e-21
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPP 301
            VNQD LKT  +C +   E LK G S ++D  N  + TR G+L  A++ G  AR + L  PKE CFHLN +R  N  SPE     VPD+VIH +FK ++PP
Sbjct:  327 VNQDTLKTKEKCLKAVVEALKAGQSAIVDNQNKDKATRKGYLDAAKKAGVPARVVLLDVPKELCFHLNCYRFMNKNSPEHRAETVPDMVIHGYFKNVQPP 426          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A7S0FJC5_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FJC5_9DINO)

HSP 1 Score: 95.9 bits (237), Expect = 3.960e-21
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPP 301
             NQD LKT  +C +  A+ LK G S ++D  N  + TR G+L  A+  G  AR + L  PKE CFHLN +R  N  SPE     VPD+VIH +FK +EPP
Sbjct:  296 ANQDTLKTKEKCIKAVADALKAGKSAIVDNQNKDKATRKGYLNAAKAAGVPARAVLLEVPKELCFHLNCYRFMNKRSPEHRAETVPDMVIHGYFKNVEPP 395          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A024TXD6_9STRA (Polynucleotide kinase 3'-phosphatase n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXD6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.330e-17
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPP 301
            +NQD LKTL +C+  A + L +G SVVID TN   K+RA W+A+AR H    R  +L  PK   FHL  FR     S +  +  VPD+VIH +FK ++ P
Sbjct:  290 INQDTLKTLAKCKAAAQDMLSQGKSVVIDNTNRDIKSRAEWIAMARDHNVPVRAFYLDLPKALVFHLKEFRMLT--SSDASKPTVPDMVIHGFFKNVQVP 387          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A7S4UZP1_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UZP1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.230e-15
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPPQAN 310
            VNQD LKT+ +C +   E L +G SV+ID TN   KTR  ++ +A       RC+F+   KE  FH+N  R  N  +   E+R VPD+V+H+++K L  P  N
Sbjct:  401 VNQDTLKTVPKCIKATKEALADGKSVIIDNTNRDMKTRKNYIDVAESLKLPCRCVFVDATKEESFHMNALRGANG-NYYGEKRTVPDMVVHSFYKNLVEPNKN 502          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A1Y2FGR0_PROLT (Polynucleotide kinase 3 phosphatase-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FGR0_PROLT)

HSP 1 Score: 79.0 bits (193), Expect = 4.990e-15
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKV-PDVVIHTWFKYLEPPQAN 310
            +NQD LKT  RC   AAE LK+G++V++D TNPA+ TRA W+AL        RC  L TP    +H N +RA    S + ERR++ P +   T+    + P+  
Sbjct:  297 INQDTLKTRPRCLSAAAEALKQGLNVLVDNTNPAKSTRAEWIALCTTLQVPIRCFVLDTPLIIAYHNNAYRALGQPSEDLERRELLPQIAFSTFASAYQEPELG 400          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A177ACP6_9PEZI (Uncharacterized protein n=2 Tax=Pseudogymnoascus destructans TaxID=655981 RepID=A0A177ACP6_9PEZI)

HSP 1 Score: 75.5 bits (184), Expect = 9.020e-14
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPPQAN 310
            +NQD LKT  +C   A  RL+EG+SVVID TNP   TR  W+ LAR+ G   RC+   T    C H +V RA N     E+R  +P++   ++     PP   
Sbjct:  333 INQDRLKTRDKCLTVARTRLEEGVSVVIDNTNPDEATRKYWVDLAREFGVEIRCVHFVTEGGVCRHNDVVRALNREMNPEKRTILPNIAFASFNSKYGPPSLQ 435          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A1B8CIA8_9PEZI (Uncharacterized protein n=1 Tax=Pseudogymnoascus sp. WSF 3629 TaxID=1622147 RepID=A0A1B8CIA8_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-13
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIARCIFLTTPKEACFHLNVFRACNPWSPEEERRKVPDVVIHTWFKYLEPP 301
            +NQD LKT  +C + A  RL+EG+SVVID TNP   TR  W+ LAR+ G   RC+   T    C H +V RA N     E+R  +P++   ++     PP
Sbjct:  330 INQDLLKTRDKCLKAARARLEEGVSVVIDNTNPDEATRKYWVDLAREVGVGIRCVHFVTEGGVCRHNDVVRALNREMNPEKRTILPNIAFTSFNSKYRPP 429          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: A0A437AD61_9PEZI (Uncharacterized protein n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A437AD61_9PEZI)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALA-RQHGAIARCIFLTTPKEACFHLNVFRA------CNPWSPEEERRKVPDVVIHTWFKYLEPPQAN 310
            +NQD LKT  +C + A   LKEG SVVIDATN +R TRA W  +A +  GA  RCI+LTTP+  C+H +  RA       NP    E R  V  +   T+    + P  +
Sbjct:  303 INQDILKTKDKCIKAAYGFLKEGKSVVIDATNSSRDTRAAWKGVADKTKGATFRCIYLTTPETLCYHNDAARAYSGIKSLNP----ENRTSVGSMAFRTFKSKFQEPHVS 408          
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Match: S8BKD4_DACHA (Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8BKD4_DACHA)

HSP 1 Score: 74.3 bits (181), Expect = 2.330e-13
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 VNQDELKTLHRCQREAAERLKEGMSVVIDATNPARKTRAGWLALARQHGAIA-RCIFLTTPKEACFHLNVFRAC------NPWSPEEERRKVPDVVIHTWFKYLEPPQAN 310
            VNQD LKT  +C R A   LKEG SVVIDATN +++TRA W ALA++ G +A RCI+L+ P+  C H +  R+       NP    + R  +PD+   T+    + P+  
Sbjct:  342 VNQDILKTKDKCIRVAEGYLKEGESVVIDATNASKETRAEWGALAKKVGDVAFRCIYLSAPEILCKHNDAVRSLSGVDTLNP----DGRSSLPDIAFRTFKSKFQEPEER 447          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16163.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FLS6_ECTSI2.410e-5078.64Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S1S7L6_ALECA2.290e-2147.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0FJC5_9DINO3.960e-2147.00Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A024TXD6_9STRA4.330e-1745.00Polynucleotide kinase 3'-phosphatase n=3 Tax=Aphan... [more]
A0A7S4UZP1_9STRA2.230e-1540.78Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A1Y2FGR0_PROLT4.990e-1540.38Polynucleotide kinase 3 phosphatase-domain-contain... [more]
A0A177ACP6_9PEZI9.020e-1439.81Uncharacterized protein n=2 Tax=Pseudogymnoascus d... [more]
A0A1B8CIA8_9PEZI1.230e-1341.00Uncharacterized protein n=1 Tax=Pseudogymnoascus s... [more]
A0A437AD61_9PEZI2.240e-1341.82Uncharacterized protein n=1 Tax=Arthrobotrys flagr... [more]
S8BKD4_DACHA2.330e-1341.82Uncharacterized protein n=1 Tax=Dactylellina hapto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16163contigL-elsbetiae_contig16163:431..1442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16163.4236.1prot_L-elsbetiae_contig16163.4236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16163 431..1441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.9467802-CDS-L-elsbetiae_contig16163:430..5331622815667.9467802-CDS-L-elsbetiae_contig16163:430..533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 431..533 +
1691683025.900137-CDS-L-elsbetiae_contig16163:430..5331691683025.900137-CDS-L-elsbetiae_contig16163:430..533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 431..533 +
1622815667.960432-CDS-L-elsbetiae_contig16163:1011..10921622815667.960432-CDS-L-elsbetiae_contig16163:1011..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 1012..1092 +
1691683025.9129913-CDS-L-elsbetiae_contig16163:1011..10921691683025.9129913-CDS-L-elsbetiae_contig16163:1011..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 1012..1092 +
1622815667.972277-CDS-L-elsbetiae_contig16163:1313..14411622815667.972277-CDS-L-elsbetiae_contig16163:1313..1441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 1314..1441 +
1691683025.923974-CDS-L-elsbetiae_contig16163:1313..14411691683025.923974-CDS-L-elsbetiae_contig16163:1313..1441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16163 1314..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16163.4236.1

>prot_L-elsbetiae_contig16163.4236.1 ID=prot_L-elsbetiae_contig16163.4236.1|Name=mRNA_L-elsbetiae_contig16163.4236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GEPRRAENPPSVPTRGGRAVEGGHERCHRRHKPGEENTSWLVGFGTATRG
DSEVHLSHYPEGGVLSPQRVPGMQPVVSRGRAPKSPRRGDPHVVQVPGTA
ASER
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mRNA from alignment at L-elsbetiae_contig16163:431..1442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16163.4236.1 ID=mRNA_L-elsbetiae_contig16163.4236.1|Name=mRNA_L-elsbetiae_contig16163.4236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1012bp|location=Sequence derived from alignment at L-elsbetiae_contig16163:431..1442+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAACCAAGACGAGCTGAAAACCCTCCATCGGTGCCAACGAGAGGCGG CCGAGCGGTTGAAGGAGGGCATGAGCGTTGTCATCGACGCCACAAACCCG GCGGTGAGAGAGATGCGACAAACTAGCGGGCTACATTTGAGTGAGTACGT GAGAGCATGCCATTCACGTTCCAACGGATTCAGCGCATGGCTGGCTGGTG GTTCCAGTTATGTTCGAGCCAAATACACCTGTCGAAATGGAGAGTGTTAC GACACATGACGGCATAAGGAAAGTGCAACACGTCAGTTGGCAACAACGAT GTGAGCGGTGTTGTCGGCAGCGGTGAGAGAGAGCGAACGTCATTTCTGTT CGTGTTCTGGCATATCGTCAACGCTCAACGAGGGCACTACTATGTACTTC CTGTGCAGTGTAGCCCGACGATAAGTGCCTCTGTGGTCCACCAGTCGGCA ATCGGTGGCTCTTCACTATGCTGGCGGGTCAACACACCACAACCGCTGAT TTGACCTTCCTCTTCCGTGCTTTATGTGCGCTTCTTATTTTTAAACAACG CTTCACTTGGCCTTCCGCCCTGACCTTCCAGAGGAAAACACGAGCTGGCT GGTTGGCTTTGGCACGGCAACACGGGGCGATAGCGAGGTGCATCTTTCTC ACTACCCCGAAGGTGAGGAAGAAGAGGGAGGAAGGAAGGCGACTCGTTTG ACTTCAAGAGCACCCACGCCACGCCACAAACCTACTGGCATTCTATCCGT CGGTTTCCTCGACTCCCGGAATGTTTGTGATGGTCGGGGCGGCTGGACTT GAGAAACGATATTTATATTTAGCAATATCAGCACAGCCCGTCGGGTCCGT GCATGCCTGCCTGCTTGTCACCAAACTTGGCAGGAGGCGTGCTTTCACCT CAACGTGTTCCGGGCATGCAACCCGTGGTCTCCAGAGGAAGAGCGCCGAA AAGTCCCAGACGTGGTGATCCACACGTGGTTCAAGTACCTGGAACCGCCG CAAGCGAACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16163:431..1442+

>mRNA_L-elsbetiae_contig16163.4236.1 ID=mRNA_L-elsbetiae_contig16163.4236.1|Name=mRNA_L-elsbetiae_contig16163.4236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig16163:431..1442+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAACCAAGACGAGCTGAAAACCCTCCATCGGTGCCAACGAGAGGCGG
CCGAGCGGTTGAAGGAGGGCATGAGCGTTGTCATCGACGCCACAAACCCG
GCGGGTGAACCAAGACGAGCTGAAAACCCTCCATCGGTGCCAACGAGAGG
CGGCCGAGCGGTTGAAGGAGGGCATGAGCGTTGTCATCGACGCCACAAAC
CCGGCGAGGAAAACACGAGCTGGCTGGTTGGCTTTGGCACGGCAACACGG
GGCGATAGCGAGGTGCATCTTTCTCACTACCCCGAAGAGGAAAACACGAG
CTGGCTGGTTGGCTTTGGCACGGCAACACGGGGCGATAGCGAGGTGCATC
TTTCTCACTACCCCGAAGGAGGCGTGCTTTCACCTCAACGTGTTCCGGGC
ATGCAACCCGTGGTCTCCAGAGGAAGAGCGCCGAAAAGTCCCAGACGTGG
TGATCCACACGTGGTTCAAGTACCTGGAACCGCCGCAAGCGAACGAGAGG
CGTGCTTTCACCTCAACGTGTTCCGGGCATGCAACCCGTGGTCTCCAGAG
GAAGAGCGCCGAAAAGTCCCAGACGTGGTGATCCACACGTGGTTCAAGTA
CCTGGAACCGCCGCAAGCGAACGA
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