mRNA_L-elsbetiae_contig16154.4231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16154.4231.1
Unique NamemRNA_L-elsbetiae_contig16154.4231.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.220e-32
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   16 RESAAGKSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            RESAAGK+GALRALLEA++PGGALHGAG+CGRLGDLG IGA YDVAVSSCTGQMDNIVVQ+AEGA+ACVEYLR
Sbjct:  596 RESAAGKTGALRALLEASSPGGALHGAGICGRLGDLGAIGADYDVAVSSCTGQMDNIVVQSAEGATACVEYLR 668          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: I2CQB6_NANGC (Nuclear condensin complex subunit smc4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQB6_NANGC)

HSP 1 Score: 79.7 bits (195), Expect = 1.720e-17
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 QAKASRESAAGKSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            +AKAS +  A  S   +AL +A+ PGGAL  AG+ GRLGDLG I AAYDVAVS+    +D +VV+TA+G SACV+YLR
Sbjct:   11 EAKASLQRTASLSSTHKALFQASLPGGALASAGIRGRLGDLGGIAAAYDVAVSTAGAALDFLVVETAQGGSACVQYLR 88          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A1W0A1W6_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1W6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.580e-13
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   19 ESAAGKSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            +S A +S  L++L++AA PG  L GAG+ GRLGDLG I   YDVA+S+  G +DN+VV+T  GA  CV++LR
Sbjct:  584 QSHATQSRMLKSLMDAARPGFPLDGAGLLGRLGDLGAIDEKYDVAISTACGALDNLVVETTSGAQRCVDHLR 655          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A485LJE1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJE1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.120e-13
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   46 LRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            L++L+ AA PG  L  AG+ GRLGDLG I A YDVA+S+  G +DN+VV+T +GA  CV YLR
Sbjct:  630 LKSLMTAARPGLELEHAGLLGRLGDLGAIDAKYDVAISTACGALDNLVVETTQGAQQCVAYLR 692          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: F0YFI0_AURAN (Structural maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 67.8 bits (164), Expect = 2.080e-11
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   40 GALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            GA+  +L+AA   G L  AGVCGRLGDLG + AAYDVA S+    +D++VV+TA G   C+E+LR
Sbjct: 1374 GAVGEVLKAAK--GPLKAAGVCGRLGDLGAVDAAYDVAASTAADMLDHVVVETAAGGQKCIEFLR 1436          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A1V9YVG2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVG2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.200e-11
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 QAKASRESAAGKSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            +A AS +S   K+  ++ L++A   GG L GAG+ GRLGDLG I   YDVAV++  G +DN+VV+T  GA   ++YL+
Sbjct:  595 EATASVQSQVSKNRMIQKLMDATKAGGPLSGAGLRGRLGDLGAIDEQYDVAVTTACGALDNLVVETTSGAQMVIKYLK 672          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A7S1TQT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQT9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.560e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   70 APGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            AP G L GAGV GR+GDLG I A YDVAVS+  G ++N++V+  +G   C+ YLR
Sbjct:    1 APRGPLSGAGVIGRIGDLGAIDAKYDVAVSTACGVLENVLVEDGDGGKMCINYLR 55          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A507FQD7_9FUNG (Structural maintenance of chromosomes protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FQD7_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 3.420e-10
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   97 GVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            G+CGRLGDLGVI   YDVAV++  GQ+DNIVV T E A  C+E+L+
Sbjct:  587 GICGRLGDLGVIDDKYDVAVTTACGQLDNIVVDTVETAQRCIEFLK 632          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: UPI0015684F87 (structural maintenance of chromosomes protein 4 n=2 Tax=Maniola TaxID=111919 RepID=UPI0015684F87)

HSP 1 Score: 64.3 bits (155), Expect = 3.430e-10
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   97 GVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            G+ GRLGDLG I A YDVA+S+C G +DNIVV T + A ACVEYL+
Sbjct:  594 GIFGRLGDLGGIDAKYDVAISTCCGALDNIVVDTVDTAQACVEYLK 639          
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Match: A0A196S9W2_BLAHN (Structural maintenance of chromosomes protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9W2_BLAHN)

HSP 1 Score: 64.3 bits (155), Expect = 3.430e-10
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   34 KSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDVAVSSCTGQMDNIVVQTAEGASACVEYLR 234
            +SG L+ L++A+   G L  A + GRLGDLG I  AYDVAVS+ +  +D IVV TAEGA  C+EYL+
Sbjct:  544 RSGVLKLLMKAS-KNGELSQAQIFGRLGDLGEIDGAYDVAVSTASSALDYIVVDTAEGAQRCIEYLK 609          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16154.4231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI1.220e-3289.04Structural maintenance of chromosomes protein n=2 ... [more]
I2CQB6_NANGC1.720e-1757.69Nuclear condensin complex subunit smc4 (Fragment) ... [more]
A0A1W0A1W6_9STRA3.580e-1352.78Structural maintenance of chromosomes protein n=1 ... [more]
A0A485LJE1_9STRA9.120e-1357.14Structural maintenance of chromosomes protein n=1 ... [more]
F0YFI0_AURAN2.080e-1153.85Structural maintenance of chromosomes protein 4 n=... [more]
A0A1V9YVG2_9STRA7.200e-1146.15Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1TQT9_9STRA8.560e-1154.55Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A507FQD7_9FUNG3.420e-1063.04Structural maintenance of chromosomes protein n=1 ... [more]
UPI0015684F873.430e-1065.22structural maintenance of chromosomes protein 4 n=... [more]
A0A196S9W2_BLAHN3.430e-1053.73Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16154contigL-elsbetiae_contig16154:1338..2046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.2e-27
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
KEGG koko:K06675
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.6271305-CDS-L-elsbetiae_contig16154:1337..14901622815667.6271305-CDS-L-elsbetiae_contig16154:1337..1490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16154 1338..1490 +
1691683025.6958623-CDS-L-elsbetiae_contig16154:1337..14901691683025.6958623-CDS-L-elsbetiae_contig16154:1337..1490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16154 1338..1490 +
1622815667.6420348-CDS-L-elsbetiae_contig16154:1959..20461622815667.6420348-CDS-L-elsbetiae_contig16154:1959..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16154 1960..2046 +
1691683025.7136254-CDS-L-elsbetiae_contig16154:1959..20461691683025.7136254-CDS-L-elsbetiae_contig16154:1959..2046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16154 1960..2046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16154.4231.1prot_L-elsbetiae_contig16154.4231.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16154 1338..2046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16154.4231.1

>prot_L-elsbetiae_contig16154.4231.1 ID=prot_L-elsbetiae_contig16154.4231.1|Name=mRNA_L-elsbetiae_contig16154.4231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
QAKASRESAAGKSGALRALLEAAAPGGALHGAGVCGRLGDLGVIGAAYDV
AVSSCTGQMDNIVVQTAEGASACVEYLRT*
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mRNA from alignment at L-elsbetiae_contig16154:1338..2046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16154.4231.1 ID=mRNA_L-elsbetiae_contig16154.4231.1|Name=mRNA_L-elsbetiae_contig16154.4231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig16154:1338..2046+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAAGGCATCGCGAGAATCAGCGGCCGGCAAGAGCGGGGCCCTCCG TGCGCTCCTCGAGGCTGCTGCGCCGGGGGGAGCCCTGCACGGCGCCGGCG TCTGCGGCCGCCTCGGCGACCTGGGGGTTATCGGGGCCGCCTACGACGTT GCGGTAAGATCGGTCGGTAGATCGCGGGATGGTAGTAGATACATACCATA TTCCCATTTTGCGGGCGCGTAACCGTAGATACCATATTCAATTTTTCGGG CGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCTCCTCCCTCGCTTGCTCGCCCTCCTCCNNNNNNNNNNAA AAAACATACACTTTTCCCTTTTGGGGGGGGCGCCACCGTATGAACCATTT TCCTTTTTTCGGGGCGCCCCCCCCCCCCCCCCCCCCCGCCGCCGCCGCCC TCTTTCCTGCGCCGCCTCGAAGGGGTTCCGTGGGTGATTTCGAGTATACC GCACGTCCTGCTTGTTCCTGTCGCGTCTCGCGAAGGCTTGGGATGTTGTT TCAACGGGCGAATCGCGAATTTGCGGCCACCCTAGTGATGCCCCCCCCGG CTTGCCCCGCCGCGATGCTCAGGTGTCTTCATGCACGGGGCAGATGGACA ACATCGTGGTCCAGACCGCCGAGGGTGCCAGTGCCTGCGTCGAGTACCTG AGGACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16154:1338..2046+

>mRNA_L-elsbetiae_contig16154.4231.1 ID=mRNA_L-elsbetiae_contig16154.4231.1|Name=mRNA_L-elsbetiae_contig16154.4231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig16154:1338..2046+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGAAGGCATCGCGAGAATCAGCGGCCGGCAAGAGCGGGGCCCTCCG
TGCGCTCCTCGAGGCTGCTGCGCCGGGGGGAGCCCTGCACGGCGCCGGCG
TCTGCGGCCGCCTCGGCGACCTGGGGGTTATCGGGGCCGCCTACGACGTT
GCGCAGGCGAAGGCATCGCGAGAATCAGCGGCCGGCAAGAGCGGGGCCCT
CCGTGCGCTCCTCGAGGCTGCTGCGCCGGGGGGAGCCCTGCACGGCGCCG
GCGTCTGCGGCCGCCTCGGCGACCTGGGGGTTATCGGGGCCGCCTACGAC
GTTGCGGTGTCTTCATGCACGGGGCAGATGGACAACATCGTGGTCCAGAC
CGCCGAGGGTGCCAGTGCCTGCGTCGAGTACCTGAGGACGTGAGTGTCTT
CATGCACGGGGCAGATGGACAACATCGTGGTCCAGACCGCCGAGGGTGCC
AGTGCCTGCGTCGAGTACCTGAGGACGTGA
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