mRNA_L-elsbetiae_contig1615.4227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: D8LFZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ2_ECTSI) HSP 1 Score: 758 bits (1957), Expect = 1.010e-258 Identity = 532/763 (69.72%), Postives = 556/763 (72.87%), Query Frame = 3 Query: 1068 MRGASGT----MSAVSPTSSRSDEVAFQQQLSLEADSRAAAAPSSLPARHGGGLVHAHGGTNNGSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIYRAVHLHLPPYAAPGL--------HDNGGXXXXXXXXXXXVSPRHPSHPRLSPSYGGPSPHSQHD-YHSPGTVAAASRTAGGGGGSREYGNGVNGPA-HWEFGFGGGG-----------------------AHRNMSMPSVHDLAMPGGSPMNHXXXXXXXXXXXXXXXXXXXXRHLRQD---ANXXXXXPRDFDFSEGDTSRGHRGXXXXXXXIDADDCRNREYDSLSPADLG-RPGSREGYVHQSPRLPGPSPRDLDHMRQQQQQH----DAGRGFSRGGGCNTGGYPGSSP--QPEYLPVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAGSIRHGVVGGSPHHVDASGLSGMLEGMSLNSPHGLAPPLAPAPGSLQQXXXXXXXXXXXXXXXXGCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGPPLAVNMARFLIMRKIQTEKEKL 3215 MRG T +S VSPTSS S+EVAFQQQLSLEA+SRAAAA L AR G + NNGSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQ+AGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDT+ASRYQNMSTIYRAVHLHLPPYA PG+ HDNG SPRHP+HPRLSPSY GPSPHS HD YHSPG VA SRT G +YG V+G A HWE G+GGG HRNMSMP+VH L+ P GSP++H RH RQ+ + PRDFDFSE DTS+ HRG ID DD R REYDS SPADLG RPGSREGYVH SP LPGPSPRDLDHMRQ D GRGFSR GG + YP S Q + P+Q+ XXXXXXXXXXX XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX S H DASGLSGM EGM+LNSP GLAPP +PGSLQQ XXXXXXXXXXX GCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAG PLAVNMARFLIMRKIQTEKEKL Sbjct: 1 MRGGGNTGTSSLSVVSPTSSHSEEVAFQQQLSLEAESRAAAAAPPLSARPSGVVAS----NNNGSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPGMQQQXXXXXHDNG------------ASPRHPNHPRLSPSYRGPSPHSHHDDYHSPGGVAG-SRT----GNRGDYGKAVSGAAAHWELGYGGGNHTPRELAPHGGGXXXXXXXXGEYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTGSSQHFGGRHPRQEHGAGSAGAAGPRDFDFSERDTSKVHRGGGAGP--IDLDDYRLREYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDLDHMRQXXXXXXXXXDGGRGFSRVGGSSP--YPPGSAASQSDLWPLQRVRQXXXXXXXXXXXILVHEARXXXXXXXXXXXXXXXXGLHDGGLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHGCDASGLSGMFEGMNLNSPPGLAPPPTCSPGSLQQKQXXXXXXXXXXXGA-GCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKIQTEKEKL 737
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.880e-21 Identity = 62/181 (34.25%), Postives = 101/181 (55.80%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIYRA 1772 +K LV N AG+LIGK G I +I+ + + + +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G A + + + V ER+VT+QG ++S + ++VD+++E+ SR+ N+S YR+ Sbjct: 87 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRS 265
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A0A1E7FL20_9STRA (KH_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL20_9STRA) HSP 1 Score: 107 bits (268), Expect = 6.400e-21 Identity = 69/209 (33.01%), Postives = 108/209 (51.67%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAAD--------------------TSLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRD----------MCTVAG----ERVVTLQGPMS-SVIHGLTLIVDRMMEDTSASRYQNMSTIYRAVHLHLPP 1793 +KLLVSN++AG++IG+ G I E++ + A IK++ G +YPGT +RV LV G+ +V++A ++ Y + T D R+L+P ++ G+IIG G + + + +GV+S+++SP+D AG ERVVTL GP S L +++D M + SRY NM+T Y HL P Sbjct: 35 IKLLVSNNVAGSIIGRAGQTISELQTQSSARIKLSQTGDYYPGTQDRVCLVQGQLSTVKLAVQLLLERFYMLQEQQHTQYLAWQPKNDEHAPTPTGFDFVVRLLVPSSSCGMIIGKAGANIKHMEESSGVSSVRLSPKDGPDQPQAQQHQTRPAGPGTQERVVTLTGPSKESCTKCLFIVIDGMFANHEISRYTNMTTSYSR---HLVP 240
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.660e-20 Identity = 64/182 (35.16%), Postives = 106/182 (58.24%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIY-----------------TAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIY 1766 LKLLVSN+MAG+LIGK G I ++ + A +KV+ +G + PGT +RVVLV G+ V+ AC ++ T++ T D +L++TQR+LIP +A GL+IG G + L + +G A + +S + + + ERVVT+ G + + + +++D + + +A+ Y N+S Y Sbjct: 50 LKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGRDRDCGVPAPLDIGTERD-ALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSG-ARVSLSQKQT-SPSSERVVTIGGSLGACRLCIDMLLDTLKREPAAAVYTNLSVNY 228
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 9.380e-20 Identity = 62/180 (34.44%), Postives = 101/180 (56.11%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIYR 1769 +K LV N AG+LIGK G I +I+ + +++ +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G A + + + V ER+VT+QG ++S + ++VD+++E+ SR+ N+S YR Sbjct: 91 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYR 268
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A0A6P8IIV0_ACTTE (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IIV0_ACTTE) HSP 1 Score: 102 bits (253), Expect = 3.620e-19 Identity = 57/172 (33.14%), Postives = 96/172 (55.81%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYT---AADTSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNM 1754 LK+LV N AG++IGKGG I +++ A IK++PN +YPGT ER+ L++GE ++ D ++ I A + +IT ++++P++ +G+IIG G + + ++ G A IQ+S +D +VAGERVV + G V +I ++ ED + N+ Sbjct: 53 LKILVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVDTIITMLDFVIDKIRQEPQGAKVNSNITFDRERAKQMKIVVPNSTAGMIIGKGGTAIKSISEQTG-ARIQISQKDADSVAGERVVCVSGEEDQVQAACAIITAKVQEDPEHALNNNI 223
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A0A8J5FG42_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FG42_ZINOF) HSP 1 Score: 97.1 bits (240), Expect = 6.150e-19 Identity = 54/173 (31.21%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQR----VLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIYRAVH 1778 ++LLVSN+MAG++IGKGG+ I + + + A I+++ N +PGT +R++L+ G V A + I+ I + + D+ R +++P+++ G IIG G + +E+ A I++SP+D + +R+VTL G +H + LI+ +++ED + N Y V+ Sbjct: 36 VRLLVSNAMAGSIIGKGGSTINDFQTQSAARIQLSRNHEIFPGTSDRIILISGTFDEVLKATELILEKILSEVEDGNDVEGRTKVKLIVPNSSCGAIIGKGGSTIKSFIEESR-AGIKISPQDDNSGLNDRLVTLAGSFEEQMHAIFLILSKLIEDPHYPQKVNSPFTYSGVY 207
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: A7SKT2_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKT2_NEMVE) HSP 1 Score: 100 bits (250), Expect = 8.300e-19 Identity = 59/184 (32.07%), Postives = 100/184 (54.35%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAAD---TSLDIT--------QRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMS----TIYRAVH 1778 LK+LV N AG++IGKGG I +++ A IK++PN ++YPGT ER+ L++GE ++ D ++ I S+ I+ ++++P++ +G+IIG G + + ++ G A IQ+S +D +VAGER+V + G V +I ++ ED + N+ T RA H Sbjct: 48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTG-ARIQISQKDAESVAGERIVCVGGSQEQVTAACVIITSKVQEDPEHALNNNIMYSGLTTSRAGH 230
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: UPI0009E5D821 (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D821) HSP 1 Score: 100 bits (249), Expect = 1.200e-18 Identity = 59/182 (32.42%), Postives = 99/182 (54.40%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAA-----------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNMSTIYRAVHLH 1784 +K+L+ N AG++IGKGG I E++ + A IK++PN +YPGT ERV L++GE ++ + ++ I D ++++P++ +GLIIG GV + + + G A IQVS ++ TV GERV+ + G + V +IV ++ ED + N+S Y ++ H Sbjct: 52 VKILIPNHAAGSIIGKGGANIAEVQQQTGARIKLSPNNDYYPGTQERVGLIMGEVETINKMLNFVIEKIRQEPQAMRLNPAMTYDRERAKQMKIVVPNSTAGLIIGKSGVTIKYIGDQTG-ARIQVSQKNAETVPGERVIGITGSLEQVQAACAVIVAKVQEDPEHALNNNIS--YSSLQSH 230
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Match: UPI000A2A8354 (RNA-binding protein Nova-1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8354) HSP 1 Score: 98.2 bits (243), Expect = 4.930e-18 Identity = 55/172 (31.98%), Postives = 93/172 (54.07%), Query Frame = 3 Query: 1272 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAA-----------DTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTSASRYQNM 1754 LK+LV N AG++IGKGG I +++ A IK++PN +YPGT ER+ L++GE ++ + +V I DT ++++P++ +G+IIG G + ++ G A IQ+S +D +VAGER+V + G V ++I ++ ED + N+ Sbjct: 22 LKVLVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVENIITMLNFVVDKIRQEPQQAKMNANIQFDTERAKQMKIVVPNSTAGMIIGKGGSAIKSYSEQTG-ARIQISQKDADSVAGERIVNVSGTEEQVQAACSIIAAKVQEDPEHALNNNI 192 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1615.4227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1615.4227.1 >prot_L-elsbetiae_contig1615.4227.1 ID=prot_L-elsbetiae_contig1615.4227.1|Name=mRNA_L-elsbetiae_contig1615.4227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=879bp MASLLFAPLAWDLPEDKNTAASTSSTGTSAAESIAVSSWPASEPSAPAPAback to top mRNA from alignment at L-elsbetiae_contig1615:1883..7139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1615.4227.1 ID=mRNA_L-elsbetiae_contig1615.4227.1|Name=mRNA_L-elsbetiae_contig1615.4227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5257bp|location=Sequence derived from alignment at L-elsbetiae_contig1615:1883..7139+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1615:1883..7139+ >mRNA_L-elsbetiae_contig1615.4227.1 ID=mRNA_L-elsbetiae_contig1615.4227.1|Name=mRNA_L-elsbetiae_contig1615.4227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5274bp|location=Sequence derived from alignment at L-elsbetiae_contig1615:1883..7139+ (Laminarionema elsbetiae ELsaHSoW15)back to top |