mRNA_L-elsbetiae_contig16148.4225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16148.4225.1
Unique NamemRNA_L-elsbetiae_contig16148.4225.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16148.4225.1 vs. uniprot
Match: D7G0H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.120e-26
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 SGMSPLSAAAWLGKEDCLEAILETEGGLATLDMANNLGATPLLFACQENRKSIAEKLLAAGASLDASDV 207
            SG+SPLSA AWLGKE CL+AIL TE GLATL++ NNLGATPL+FACQEN K IA+KL+AAGASLDA D+
Sbjct:  201 SGLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 269
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BLAST of mRNA_L-elsbetiae_contig16148.4225.1 vs. uniprot
Match: A0A6H5KW25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.350e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 SGMSPLSAAAWLGKEDCLEAILETEGGLATLDMANNLGATPLLFACQENRKSIAEKLLAAGASLDASDV 207
            SG+S +SA  WLGKE CL+ IL TE GL TL++ NNLGATPL+FACQEN K IA KL+AAGASLDA D+
Sbjct:   21 SGLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIA-KLIAAGASLDAKDL 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16148.4225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0H8_ECTSI1.120e-2676.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW25_9PHAE8.350e-2469.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16148contigL-elsbetiae_contig16148:504..713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.4e-21
Seed eggNOG ortholog2880.D7G0H8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-20_002370.1
Exons1
Model size210
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.284037-CDS-L-elsbetiae_contig16148:503..7071622815667.284037-CDS-L-elsbetiae_contig16148:503..707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16148 504..707 -
1691683025.467579-CDS-L-elsbetiae_contig16148:503..7071691683025.467579-CDS-L-elsbetiae_contig16148:503..707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16148 504..707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.2941406-UTR-L-elsbetiae_contig16148:707..7131622815667.2941406-UTR-L-elsbetiae_contig16148:707..713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16148 708..713 -
1691683025.4821494-UTR-L-elsbetiae_contig16148:707..7131691683025.4821494-UTR-L-elsbetiae_contig16148:707..713Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16148 708..713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16148.4225.1prot_L-elsbetiae_contig16148.4225.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16148 504..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16148.4225.1

>prot_L-elsbetiae_contig16148.4225.1 ID=prot_L-elsbetiae_contig16148.4225.1|Name=mRNA_L-elsbetiae_contig16148.4225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MSPLSAAAWLGKEDCLEAILETEGGLATLDMANNLGATPLLFACQENRKS
IAEKLLAAGASLDASDV*
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mRNA from alignment at L-elsbetiae_contig16148:504..713-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16148.4225.1 ID=mRNA_L-elsbetiae_contig16148.4225.1|Name=mRNA_L-elsbetiae_contig16148.4225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig16148:504..713- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCATGAGCCCCCTGTCGGCTGCGGCCTGGCTGGGCAAGGAGGACTG
CCTGGAGGCGATCCTTGAAACCGAGGGCGGCCTCGCGACCCTCGACATGG
CCAACAATCTGGGCGCCACGCCCCTACTCTTCGCCTGCCAGGAGAACAGG
AAGAGCATCGCGGAGAAGCTCCTGGCCGCCGGAGCGAGCCTCGACGCGAG
CGACGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16148:504..713-

>mRNA_L-elsbetiae_contig16148.4225.1 ID=mRNA_L-elsbetiae_contig16148.4225.1|Name=mRNA_L-elsbetiae_contig16148.4225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig16148:504..713- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCCCCTGTCGGCTGCGGCCTGGCTGGGCAAGGAGGACTGCCTGGA
GGCGATCCTTGAAACCGAGGGCGGCCTCGCGACCCTCGACATGGCCAACA
ATCTGGGCGCCACGCCCCTACTCTTCGCCTGCCAGGAGAACAGGAAGAGC
ATCGCGGAGAAGCTCCTGGCCGCCGGAGCGAGCCTCGACGCGAGCGACGT
GTGAATGAGCCCCCTGTCGGCTGCGGCCTGGCTGGGCAAGGAGGACTGCC
TGGAGGCGATCCTTGAAACCGAGGGCGGCCTCGCGACCCTCGACATGGCC
AACAATCTGGGCGCCACGCCCCTACTCTTCGCCTGCCAGGAGAACAGGAA
GAGCATCGCGGAGAAGCTCCTGGCCGCCGGAGCGAGCCTCGACGCGAGCG
ACGTGTGA
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