mRNA_L-elsbetiae_contig16145.4222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16145.4222.1
Unique NamemRNA_L-elsbetiae_contig16145.4222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16145.4222.1 vs. uniprot
Match: A0A6H5KAA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.760e-5
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = -2 
Query:    2 MMTSIKTHISGNFQSRATEHLSSQLERRLW 91
            MMTSIKTHISGNF+SR  +HLS +LERRLW
Sbjct:    1 MMTSIKTHISGNFESRLVDHLSCRLERRLW 30
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16145.4222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAA5_9PHAE4.760e-580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16145contigL-elsbetiae_contig16145:2107..2747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.0898879-UTR-L-elsbetiae_contig16145:2106..21711622815667.0898879-UTR-L-elsbetiae_contig16145:2106..2171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16145 2107..2171 +
1691683025.3899696-UTR-L-elsbetiae_contig16145:2106..21711691683025.3899696-UTR-L-elsbetiae_contig16145:2106..2171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16145 2107..2171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.1002862-CDS-L-elsbetiae_contig16145:2171..27471622815667.1002862-CDS-L-elsbetiae_contig16145:2171..2747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16145 2172..2747 +
1691683025.4003325-CDS-L-elsbetiae_contig16145:2171..27471691683025.4003325-CDS-L-elsbetiae_contig16145:2171..2747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16145 2172..2747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16145.4222.1prot_L-elsbetiae_contig16145.4222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16145 2172..2747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16145.4222.1

>prot_L-elsbetiae_contig16145.4222.1 ID=prot_L-elsbetiae_contig16145.4222.1|Name=mRNA_L-elsbetiae_contig16145.4222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MWVLMEVIISPQSASLHRRGNDLTSRSVSSSSSRARRYDSRSGCCRGFVR
VLSSLPEISVNSCWMKVLLTTSVLDGSFSARTFKQTETRCRSIPSDLASL
SICWTRASFPGTSSRTQAFIEVVTDRTLRVVSLMPLAAAKSLSSLLVAMS
LLVASPSSAFWLGSPCVFLLRFEFVLVESGSFSVGMLRCYHG
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mRNA from alignment at L-elsbetiae_contig16145:2107..2747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16145.4222.1 ID=mRNA_L-elsbetiae_contig16145.4222.1|Name=mRNA_L-elsbetiae_contig16145.4222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=641bp|location=Sequence derived from alignment at L-elsbetiae_contig16145:2107..2747+ (Laminarionema elsbetiae ELsaHSoW15)
CCCATAGCCTCCTCTCGAGCTGAGACGAAAGGTGTTCTGTCGCTCTGCTC
TGAAAGTTGCCTGATATGTGGGTCTTGATGGAGGTCATCATCTCCCCACA
GAGTGCGTCTCTGCACCGAAGAGGAAACGACCTCACCTCGCGCAGCGTCT
CTTCGTCTAGCTCTCGTGCTCGGAGGTACGACTCGAGGTCTGGGTGCTGT
AGAGGCTTTGTCCGGGTGTTGAGCTCGTTGCCCGAAATCAGCGTAAATAG
TTGTTGGATGAAAGTCCTGTTGACTACCAGCGTGTTGGACGGATCCTTCT
CCGCAAGGACGTTCAAGCAAACCGAGACGAGGTGTCGAAGTATCCCAAGC
GACCTGGCGTCCTTGTCGATTTGTTGGACAAGAGCCTCCTTCCCCGGAAC
ATCTTCGCGTACACAAGCATTTATAGAGGTGGTGACGGACCGCACTCTAA
GGGTGGTGTCTTTGATGCCCCTCGCGGCTGCGAAGAGTTTAAGTTCGTTG
CTCGTGGCAATGTCTCTGCTTGTTGCATCACCATCCTCCGCATTCTGGTT
GGGTTCCCCGTGTGTCTTCCTTTTGCGCTTCGAATTTGTGTTGGTCGAAT
CGGGTTCCTTTTCAGTTGGCATGTTGCGTTGTTACCATGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16145:2107..2747+

>mRNA_L-elsbetiae_contig16145.4222.1 ID=mRNA_L-elsbetiae_contig16145.4222.1|Name=mRNA_L-elsbetiae_contig16145.4222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig16145:2107..2747+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGTCTTGATGGAGGTCATCATCTCCCCACAGAGTGCGTCTCTGCA
CCGAAGAGGAAACGACCTCACCTCGCGCAGCGTCTCTTCGTCTAGCTCTC
GTGCTCGGAGGTACGACTCGAGGTCTGGGTGCTGTAGAGGCTTTGTCCGG
GTGTTGAGCTCGTTGCCCGAAATCAGCGTAAATAGTTGTTGGATGAAAGT
CCTGTTGACTACCAGCGTGTTGGACGGATCCTTCTCCGCAAGGACGTTCA
AGCAAACCGAGACGAGGTGTCGAAGTATCCCAAGCGACCTGGCGTCCTTG
TCGATTTGTTGGACAAGAGCCTCCTTCCCCGGAACATCTTCGCGTACACA
AGCATTTATAGAGGTGGTGACGGACCGCACTCTAAGGGTGGTGTCTTTGA
TGCCCCTCGCGGCTGCGAAGAGTTTAAGTTCGTTGCTCGTGGCAATGTCT
CTGCTTGTTGCATCACCATCCTCCGCATTCTGGTTGGGTTCCCCGTGTGT
CTTCCTTTTGCGCTTCGAATTTGTGTTGGTCGAATCGGGTTCCTTTTCAG
TTGGCATGTTGCGTTGTTACCATGGAATGTGGGTCTTGATGGAGGTCATC
ATCTCCCCACAGAGTGCGTCTCTGCACCGAAGAGGAAACGACCTCACCTC
GCGCAGCGTCTCTTCGTCTAGCTCTCGTGCTCGGAGGTACGACTCGAGGT
CTGGGTGCTGTAGAGGCTTTGTCCGGGTGTTGAGCTCGTTGCCCGAAATC
AGCGTAAATAGTTGTTGGATGAAAGTCCTGTTGACTACCAGCGTGTTGGA
CGGATCCTTCTCCGCAAGGACGTTCAAGCAAACCGAGACGAGGTGTCGAA
GTATCCCAAGCGACCTGGCGTCCTTGTCGATTTGTTGGACAAGAGCCTCC
TTCCCCGGAACATCTTCGCGTACACAAGCATTTATAGAGGTGGTGACGGA
CCGCACTCTAAGGGTGGTGTCTTTGATGCCCCTCGCGGCTGCGAAGAGTT
TAAGTTCGTTGCTCGTGGCAATGTCTCTGCTTGTTGCATCACCATCCTCC
GCATTCTGGTTGGGTTCCCCGTGTGTCTTCCTTTTGCGCTTCGAATTTGT
GTTGGTCGAATCGGGTTCCTTTTCAGTTGGCATGTTGCGTTGTTACCATG
GA
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