mRNA_L-elsbetiae_contig16144.4220.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 302 bits (774), Expect = 1.300e-97 Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1 Query: 1 MAQKVSGELWASSDDALQLVAELERGTETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGRPKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 M++KV+GELWASS DAL+LVAELERG ETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYN KLCL+VGV SENKTQVFAQGFFSNESTEAFDFANKFFL+ICGG PKVI+TDSDAAMKESI GVFPPPHTTHLLCSWHICKNIKK Sbjct: 25 MSRKVTGELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKK 182
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.220e-60 Identity = 107/172 (62.21%), Postives = 127/172 (73.84%), Query Frame = 1 Query: 1 MAQKVSGELWASSDDALQLVAELERGTETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGR--------------PKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 M+ KVS WAS DAL+LVA+LERG TVKWE DA ++LRSIMWASPEQI+LARTYGG+VIQDNTCL NRY++KLCL+VGV SENKT +FAQG SNE +FDFAN+F LEI GG P+VI+TD+DAAM S+A + P HT HL SWHI KN+K+ Sbjct: 798 MSDKVSRGRWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMP--HTKHLYSSWHISKNLKR 967
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.090e-34 Identity = 74/193 (38.34%), Postives = 108/193 (55.96%), Query Frame = 1 Query: 7 QKVSGELWASSDDALQLVAELERGTET-VKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR------------------------------------YNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGRPKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 QKV E W++ DAL LV+EL+ VK++ D + L+ + W++ +Q + AR +GG+V+QDNT LTNR Y L++GV SENKT VFAQGFFS++S++ + +A K + ICGG+P+VI+TD+DA M ++ F P T HL C WH+ KN++K Sbjct: 47 QKVQRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEVIITDADAGMTHAVE-TFLPSTTVHLYCLWHVMKNVRK 238
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI0019D552B3 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D552B3) HSP 1 Score: 95.9 bits (237), Expect = 4.590e-20 Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 100 LDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGR-PKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNI 468 +D ENI+RSI W + YG + D T TNRYN L VG+ K +F +++ E F++ + F+E G+ PK+IMTD DAAMK++IA P H LC WHI KN+ Sbjct: 354 MDEENIVRSIFWTDARGRMDYDLYGDFISFDTTFSTNRYNMPFALIVGINGHGKNVIFGCALIEDQTAETFEWVFRTFVETMSGKKPKIIMTDQDAAMKKAIANYMPD--VIHRLCIWHIMKNL 475
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI000B8AD7C3 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AD7C3) HSP 1 Score: 92.0 bits (227), Expect = 7.180e-19 Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 1 Query: 1 MAQKVSGELWASSDDALQLVAELERGTETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGG--RPKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNI 468 + K+ E S L ELE+G T + D + L + +A P I+LA+TY V + D T TN+Y L +G+ S NK+ A F NE E + +A K F I G +P+VI+TD + A+ +I VFP TTHLLC WHI KNI Sbjct: 157 LKNKIQKESLGSRSLIQALFEELEQGGFTFTYVKDDKGHLTHVFFAHPRSIMLAKTYSSVFVMDCTYKTNKYGMPLLDIIGMTSLNKSFYAAFVFLQNEKEEDYVWALKNFSSILGFNCQPQVIVTDRELALIGAINIVFP--ETTHLLCVWHIQKNI 312
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI000B8AFA28 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AFA28) HSP 1 Score: 92.0 bits (227), Expect = 1.040e-18 Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 1 Query: 1 MAQKVSGELWASSDDALQLVAELERGTETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGG--RPKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNI 468 + K+ E S L ELE+G T + D + L + +A P I+LA+TY V + D T TN+Y L +G+ S NK+ A F NE E + +A K F I G +P+VI+TD + A+ +I VFP TTHLLC WHI KNI Sbjct: 157 LKNKIQKESLGSRSLIQALFEELEQGGFTFTYVKDDKGHLTHVFFAHPRSIMLAKTYSSVFVMDCTYKTNKYGMPLLDIIGMTSLNKSFYAAFVFLQNEKEEDYVWALKNFSSILGFNCQPQVIVTDRELALIGAINIVFP--ETTHLLCVWHIQKNI 312
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI0019D5D764 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5D764) HSP 1 Score: 92.0 bits (227), Expect = 1.080e-18 Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 100 LDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGR-PKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNI 468 +D EN ++SI W + YG + D T TN+YN L VG+ K +F +++ E F++ K F+E G+ PK+IMTD DAAMK++IA P H LC WHI KNI Sbjct: 396 VDEENRVKSIFWTDARGKMDYELYGDFISFDTTFSTNKYNMPFALIVGINGHAKNVIFGCALLEDQTAETFEWVFKTFVETMNGKKPKIIMTDQDAAMKKAIADFMPD--VIHRLCIWHIMKNI 517
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: A0A5J9U8Y8_9POAL (Protein FAR1-RELATED SEQUENCE (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U8Y8_9POAL) HSP 1 Score: 87.4 bits (215), Expect = 4.400e-17 Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1 Query: 97 ELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGRPKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 +LD + +RS+ WA L ++G VV D T TN YN L+VGV ++ VFA + E+T+AF +A + F+++ GG PK I+TD AM+ +I+ P T H C WH+ K K+ Sbjct: 223 DLDEGSRVRSMFWAHGASKLGYDSFGDVVTFDTTYRTNLYNLPFGLFVGVNHHFQSVVFAAVLLTEETTQAFQWAFRTFVDVMGGEPKTILTDQCQAMRAAISTELP--RTRHRWCRWHVLKKAKE 346
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI001F5C2846 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C2846) HSP 1 Score: 87.4 bits (215), Expect = 4.510e-17 Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 91 KWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGR-PKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 K E+D E ++RS+ W + + + YG ++ D T TN+YN +G+ KT VF ++S + F++ + F+E+ G+ PK+I+TD DAA++ +I+ VF H C WHI +N+K+ Sbjct: 401 KMEVDGEGMVRSLFWTDAKSRMDYKLYGDLICFDTTYSTNKYNMPFAPIIGINGNAKTIVFGWALLKDQSADTFEWLFESFVEVMEGKKPKLILTDQDAAIQAAISRVFWDAF--HRFCIWHILQNLKQ 527
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Match: UPI00098AD9DA (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098AD9DA) HSP 1 Score: 86.7 bits (213), Expect = 7.350e-17 Identity = 40/129 (31.01%), Postives = 70/129 (54.26%), Query Frame = 1 Query: 91 KWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNYKLCLYVGVGSENKTQVFAQGFFSNESTEAFDFANKFFLEICGGR-PKVIMTDSDAAMKESIAGVFPPPHTTHLLCSWHICKNIKK 474 K + D+ N + S+ W + L +G ++ D T TN+YN +GV ++T VF +E + F + + F+++ GG+ P+V++TD DAAMK+++ VFP H C WH+C+ ++ Sbjct: 80 KAQRDSSNAILSLFWTNSRSRLDYLLFGDIISFDTTFSTNKYNMPFAPIIGVNGHSRTIVFGWALLQDEKADTFKWLFETFVDVMGGKKPRVVLTDQDAAMKKAVPKVFPDAF--HRFCIWHVCRKARE 206 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16144.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16144.4220.1 >prot_L-elsbetiae_contig16144.4220.1 ID=prot_L-elsbetiae_contig16144.4220.1|Name=mRNA_L-elsbetiae_contig16144.4220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp MAQKVSGELWASSDDALQLVAELERGTETVKWELDAENILRSIMWASPEQback to top mRNA from alignment at L-elsbetiae_contig16144:2518..3416+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16144.4220.1 ID=mRNA_L-elsbetiae_contig16144.4220.1|Name=mRNA_L-elsbetiae_contig16144.4220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=899bp|location=Sequence derived from alignment at L-elsbetiae_contig16144:2518..3416+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16144:2518..3416+ >mRNA_L-elsbetiae_contig16144.4220.1 ID=mRNA_L-elsbetiae_contig16144.4220.1|Name=mRNA_L-elsbetiae_contig16144.4220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig16144:2518..3416+ (Laminarionema elsbetiae ELsaHSoW15)back to top |