mRNA_L-elsbetiae_contig16135.4214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16135.4214.1
Unique NamemRNA_L-elsbetiae_contig16135.4214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.110e-66
Identity = 106/115 (92.17%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 YLLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            YL S  H +   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   11 YLGSSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.020e-65
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 YLLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            Y L    ++L  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:    5 YRLLPSRDNLTAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 119
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 202 bits (513), Expect = 2.180e-65
Identity = 105/113 (92.92%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:    7 LSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            ++QQH+S   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MNQQHSS---MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: UPI001ABDC554 (histone H4-like n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABDC554)

HSP 1 Score: 204 bits (519), Expect = 5.430e-65
Identity = 105/115 (91.30%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:    1 YLLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            Y L +Q  +L  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   89 YALKRQGRTLYGMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 203
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A453J6R2_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J6R2_AEGTS)

HSP 1 Score: 201 bits (512), Expect = 7.180e-65
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:    7 LSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            + Q+    P MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   24 IPQRRPQQPAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 1.110e-64
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 1 
Query:    4 LLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            L  Q  ++ P MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 LHFQTPSAPPIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A8J5LQK2_ZINOF (Histone H4 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LQK2_ZINOF)

HSP 1 Score: 201 bits (511), Expect = 1.370e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:   25 SLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            S  DMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   39 SFVDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 145
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A7S3KWS3_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWS3_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.390e-64
Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    4 LLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
             L  QH  +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   13 FLRNQHQFI--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 124
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: W5PHH3_SHEEP (Histone H4 n=4 Tax=Pecora TaxID=35500 RepID=W5PHH3_SHEEP)

HSP 1 Score: 199 bits (507), Expect = 1.580e-64
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:   28 LPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            + DMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 VADMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
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BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Match: A0A7J6GM37_CANSA (Histone H4 n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6GM37_CANSA)

HSP 1 Score: 203 bits (516), Expect = 1.760e-64
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 YLLSQQHNSL----PDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 345
            Y L +Q  +L    P MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   89 YALKRQGRTLEGKEPKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16135.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TR01_9STRA6.110e-6692.17Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re... [more]
A0A4D9CLB0_9STRA1.020e-6591.30Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776... [more]
UPI000528D6F72.180e-6592.92histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta... [more]
UPI001ABDC5545.430e-6591.30histone H4-like n=1 Tax=Bufo bufo TaxID=8384 RepID... [more]
A0A453J6R2_AEGTS7.180e-6591.15Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A453N2X0_AEGTS1.110e-6491.23Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
A0A8J5LQK2_ZINOF1.370e-6496.26Histone H4 n=1 Tax=Zingiber officinale TaxID=94328... [more]
A0A7S3KWS3_9STRA1.390e-6492.11Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655... [more]
W5PHH3_SHEEP1.580e-6496.23Histone H4 n=4 Tax=Pecora TaxID=35500 RepID=W5PHH3... [more]
A0A7J6GM37_CANSA1.760e-6489.08Histone H4 n=1 Tax=Cannabis sativa TaxID=3483 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16135contigL-elsbetiae_contig16135:388..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score205.7
Seed ortholog evalue1.2e-50
Seed eggNOG ortholog109478.XP_005863153.1
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs3A1K0@33154,3BQBZ@33208,3D75E@33213,3JGNA@40674,48E3B@7711,49ATY@7742,4M2AI@9397,COG2036@1,COG5262@1,KOG1756@2759,KOG3467@2759
COG Functional cat.B
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.546446-CDS-L-elsbetiae_contig16135:387..7351622815666.546446-CDS-L-elsbetiae_contig16135:387..735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16135 388..735 -
1691683025.0578332-CDS-L-elsbetiae_contig16135:387..7351691683025.0578332-CDS-L-elsbetiae_contig16135:387..735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16135 388..735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16135.4214.1prot_L-elsbetiae_contig16135.4214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16135 388..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16135.4214.1

>prot_L-elsbetiae_contig16135.4214.1 ID=prot_L-elsbetiae_contig16135.4214.1|Name=mRNA_L-elsbetiae_contig16135.4214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
YLLSQQHNSLPDMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRL
ARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVV
YALKRQGRTLYGFGG*
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mRNA from alignment at L-elsbetiae_contig16135:388..735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16135.4214.1 ID=mRNA_L-elsbetiae_contig16135.4214.1|Name=mRNA_L-elsbetiae_contig16135.4214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig16135:388..735- (Laminarionema elsbetiae ELsaHSoW15)
TATCTTTTATCTCAGCAACACAACTCTCTACCCGACATGTCTGGACGCGG
AAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAAGCGCCACCGGAAGG
TACTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTC
GCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTCATCTACGAGGAAAC
CCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCA
CCTACACCGAGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTGGTG
TACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGATTCGGAGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16135:388..735-

>mRNA_L-elsbetiae_contig16135.4214.1 ID=mRNA_L-elsbetiae_contig16135.4214.1|Name=mRNA_L-elsbetiae_contig16135.4214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig16135:388..735- (Laminarionema elsbetiae ELsaHSoW15)
TATCTTTTATCTCAGCAACACAACTCTCTACCCGACATGTCTGGACGCGG
AAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAAGCGCCACCGGAAGG
TACTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTC
GCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTCATCTACGAGGAAAC
CCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCA
CCTACACCGAGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTGGTG
TACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGATTCGGAGGCTAATA
TCTTTTATCTCAGCAACACAACTCTCTACCCGACATGTCTGGACGCGGAA
AGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAAGCGCCACCGGAAGGTA
CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTCGC
TCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTCATCTACGAGGAAACCC
GCGGCGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCACC
TACACCGAGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTGGTGTA
CGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGATTCGGAGGCTAA
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