mRNA_L-elsbetiae_contig16124.4206.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16124.4206.1
Unique NamemRNA_L-elsbetiae_contig16124.4206.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16124.4206.1 vs. uniprot
Match: D7G8I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I4_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 5.700e-107
Identity = 173/245 (70.61%), Postives = 194/245 (79.18%), Query Frame = 1 
Query:    1 MGRYRP-RVFAVVSTCCCVCICRGWNPATLHHIANRQPPARGTAWSRTARVAPPWRPDHPKADTALAAAARAPRDPWEAAAAEQEAQKNGSEGEKRVIPRLKMDDSPIPEHLIDMLKESGDIDEDGNPVNDFFDPDEDDTFGTQRERDRFTEEQNYYNDVPFGDMLFEGKAGDDNSEFTGSLMDTSINNAAFEFGFPVEFFLDMLCRWEVTLPINQDCRLGDMIDAEQAAALCEALTGLDASDVR 732
            M R RP  + A  +TCCC+   +GWNP    +       AR T WSR ARVA      H +A  A+AAA  APRDPWEAA   QEA++   +G+K+ +PRLKMDDSPIPE+LIDMLKESGD+DEDG PVNDFFDPDEDDTFGTQRERDR  EE+ YYNDVPFGDMLFEGKAG +N++ TGSLMDTSINNA FE+GFPVEFFLDMLCRW VTLPINQD RLGDMIDAEQAAALCEALTGLDA+DVR
Sbjct:    1 MRRCRPCALAAAATTCCCLRFSQGWNPVATLNPGLTSAAARATPWSRAARVASARPSQHTRARAAIAAAV-APRDPWEAAG--QEAKEGDEKGKKKAMPRLKMDDSPIPEYLIDMLKESGDVDEDGKPVNDFFDPDEDDTFGTQRERDRLKEEELYYNDVPFGDMLFEGKAGGENAQDTGSLMDTSINNAVFEYGFPVEFFLDMLCRWGVTLPINQDRRLGDMIDAEQAAALCEALTGLDAADVR 242
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16124.4206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I4_ECTSI5.700e-10770.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16124contigL-elsbetiae_contig16124:766..3756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_003130.1
Exons4
Model size732
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16124.4206.1prot_L-elsbetiae_contig16124.4206.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16124 766..3756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.74093-CDS-L-elsbetiae_contig16124:765..10611622815665.74093-CDS-L-elsbetiae_contig16124:765..1061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 766..1061 +
1691683024.503476-CDS-L-elsbetiae_contig16124:765..10611691683024.503476-CDS-L-elsbetiae_contig16124:765..1061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 766..1061 +
1622815665.7512002-CDS-L-elsbetiae_contig16124:2646..28061622815665.7512002-CDS-L-elsbetiae_contig16124:2646..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 2647..2806 +
1691683024.5164728-CDS-L-elsbetiae_contig16124:2646..28061691683024.5164728-CDS-L-elsbetiae_contig16124:2646..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 2647..2806 +
1622815665.760724-CDS-L-elsbetiae_contig16124:3252..34131622815665.760724-CDS-L-elsbetiae_contig16124:3252..3413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 3253..3413 +
1691683024.5259295-CDS-L-elsbetiae_contig16124:3252..34131691683024.5259295-CDS-L-elsbetiae_contig16124:3252..3413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 3253..3413 +
1622815665.770014-CDS-L-elsbetiae_contig16124:3641..37561622815665.770014-CDS-L-elsbetiae_contig16124:3641..3756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 3642..3756 +
1691683024.53512-CDS-L-elsbetiae_contig16124:3641..37561691683024.53512-CDS-L-elsbetiae_contig16124:3641..3756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16124 3642..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16124.4206.1

>prot_L-elsbetiae_contig16124.4206.1 ID=prot_L-elsbetiae_contig16124.4206.1|Name=mRNA_L-elsbetiae_contig16124.4206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MGRYRPRVFAVVSTCCCVCICRGWNPATLHHIANRQPPARGTAWSRTARV
APPWRPDHPKADTALAAAARAPRDPWEAAAAEQEAQKNGSEGEKRVIPRL
KMDDSPIPEHLIDMLKESGDIDEDGNPVNDFFDPDEDDTFGTQRERDRFT
EEQNYYNDVPFGDMLFEGKAGDDNSEFTGSLMDTSINNAAFEFGFPVEFF
LDMLCRWEVTLPINQDCRLGDMIDAEQAAALCEALTGLDASDVR
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mRNA from alignment at L-elsbetiae_contig16124:766..3756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16124.4206.1 ID=mRNA_L-elsbetiae_contig16124.4206.1|Name=mRNA_L-elsbetiae_contig16124.4206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2991bp|location=Sequence derived from alignment at L-elsbetiae_contig16124:766..3756+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCGGTATAGACCTCGCGTCTTTGCGGTGGTGTCAACTTGCTGCTG
CGTGTGCATCTGTCGAGGATGGAACCCTGCCACGCTTCACCACATTGCAA
ACCGCCAACCACCAGCGCGAGGGACCGCATGGTCTCGAACGGCCAGGGTG
GCTCCACCCTGGCGACCCGACCACCCCAAAGCGGACACAGCCTTGGCAGC
AGCAGCCAGAGCGCCGCGTGATCCATGGGAAGCTGCCGCTGCCGAGCAGG
AGGCGCAAAAGAACGGCAGTGAAGGCGAAAAGAGGGTTATCCCACGGTGA
GAGATGTGTGCAAGTCTTGAATTGAAGTTGAAAGGTCGCGTTTCACGTTC
GGACGCGAGGCTGTGTGGGAGAGCCCGCAGCCCACAGGCTGCAGTGCTTA
GACGCTGGCGCTCAGATGTAGATCAGTGAAGCCTGTGGTCGAGTCCAGAA
TCCAGAGTCGAGCTCGATTGCTGCATCGCATCTTTCAACCAAGTGCTTGA
ATCATGCGTGCGGCGGAGCTTTTATCAACCATGCGTTTGAAACCCACCGA
GTCTTGGCTCTCATGTGGGCTAGGTTCCATTTTTGATTCGCTGATTTCTA
GTTAACCATGAATGCGAGACCCGACCTGAAACAAATCCCCAGGATCAGGT
CAGAAGAACGGCGCCTGACCTCCTCAGTTCTTCTAAAACCCTAAAAACAG
TGGTGTGCCGGTTGGGGGGCCCGCAATGGAGTTTGTCGACCCTTTTCGGA
GCTGCAAAAGTTGTAGCACACAGTCTTGGCTTCTGAGGACACTATCCGGT
AGCTTATGTCTAGGCAGACCAGTAGCGCTGAAGAAATCAAGGAACACGGA
GGGGTATGGGGCTCGCTGGAGAGGCAGAAAAACATTTTCCAGAGATACCC
TGAGAGAATCAAGCGTTTTTGAGAGTTGGGAAATTCCTTCGAGCATCCCC
GGATACTCCGCCGGCACCTCAGATCATCGCTGCAGCCCACCCAGGTGAAC
CTAAGCCATCAAGACAGACTGAAAGCCATAGTGTCATGCACTACTGCTTT
GGTGTTACTGGGTGAGGTTTAGTCTCTATTTTTGCGGTCTGCGCCTGGTG
CGAGGGTCAAACGACGCACAAAATTCCGGTGCTGACTGGCTGCATCGCTG
CGTTTTGGTGGGCGTCAATCAACTGACCAACTGTCTACGACTGAAAGCGG
GAATCGGAGACATACACCACTGTCATCATATTTTCGTATCAACCGTCCAT
TACTGTGTTCGCGCTCGGTGGCGCAAGAAAACGGTGATCGCGTGGGAGCA
TATTTTCAGACAATTTCCAAGTGGAAACCAGATTCTCTCTCCGAGGGGAG
ATGTTATCTTGAGTGGTTGTTTGAGGGGGTGTAATCTTGTGTGGTATCGG
CACATATTCTCTGGTAGCAATTTCCGCGAGGGCTGACATCAATTGACCAA
CAAAGGTTCGCGACCACAGCAGCGGTATTTCCTCTTACAGCTGCCTACTG
CTCAATAGTCGAACCGTCAGAATCTGTGTTCAAGCTCTCCGAGCCGAGAT
ATCTCTGCCAAGGCACGTGCCCCGAGTGGTCCAGTCTGTATCCCAGTGTA
TATGGAGGAGTTCTGTGAACCGTATCACATCTGCCGAGCCCCTTCTAAGG
TAATTATCTGCCGGCCCCCCTAACGTAACAACACTGAAAAATGACAGCTT
CAGAGAGTCAGTCCTTACAGCCGCCAAGATACCACGAAACGCCAAGGTTA
TCACGCCCACTGCTGTTCATAACTAATACACTTCTACTTTTTTTCATGAC
GAAAAGCATTGCTGTTTTACAACCGAACACCGCTCGCTGTTGCCCACCCA
CCCTCTCCCCGAACGGAAACAACCAAACCAGGTTGAAGATGGATGATTCC
CCAATCCCGGAACATCTGATCGACATGCTGAAAGAGTCGGGAGACATCGA
CGAGGATGGTAATCCCGTCAACGATTTCTTCGATCCGGACGAGGACGACA
CGTTCGGCACACAGAGAGAGCGGGACCGCTTCACCGAAGAGGTATAGGAG
CGTTCATCTCTTTGATTGTGCGCTCTGTTGGTGGTCACAAACTCTCCTCC
ACGTGGTTTCGTGGTTTCTATCAGAGAAAGAGGGGAAGGACGTAGGCAGC
CGACTACGTAGCTACGAGGAGCAGGGCGTAGAACGGCCAGCAGCATTTTC
GCATCCAAGCACGAAGAGGCCACACTGCTCGTGTAATATATATGTAAGCA
CATACATATGTAGTGTGCCTGTAGGCAAGACGTTGTCGGTGTAGTGGGGG
AAGCAAAAGGTGCAAAAGGTGCCGGGCAGCCTACGATATAAGCCGTTTCT
GGAACCAGATTGAAACACGCAGAGCCGTATTCACTTGCTCATTGGCTGCC
GCGATATGCACTGCTTTCCTGCTGCCATGCCGCCGCGCGAAAAAACTTAA
ACTTCCGGCCGTAATTCATCGAATAATCGTGCCGCAGCAAAACTACTACA
ACGACGTGCCATTCGGAGATATGCTTTTCGAGGGCAAGGCCGGCGACGAT
AACTCCGAATTCACGGGCAGCCTCATGGACACCTCCATCAACAACGCGGC
GTTCGAGTTCGGGTTTCCGGTGGAGTTTTTCCTCGACATGCTCTGTAGGT
ACGGAGTCAAAGGAATTTACAGTGATCCATGCTCTCCCCGAGGTTGGTTT
TATGGAAAATTCACGTTTTTTTTCCCGTTAAATAGCGACGCATCGGGTGA
CGACACAGAAATTGCCCCTCCTCAGCGGAGCACCACATATCCTCTGCATT
CTTCATCAACCCGCAGCTCATGTTCGTGAGTTGAATAACCGCCCGTTTCC
GTCGCTATCGATGGTGCGTGTGAAAGGTGGGAAGTAACGCTGCCGATCAA
CCAAGATTGTCGGCTGGGAGACATGATCGACGCGGAGCAGGCGGCGGCCC
TGTGTGAAGCTCTCACGGGCCTAGATGCTTCGGATGTGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16124:766..3756+

>mRNA_L-elsbetiae_contig16124.4206.1 ID=mRNA_L-elsbetiae_contig16124.4206.1|Name=mRNA_L-elsbetiae_contig16124.4206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig16124:766..3756+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCGGTATAGACCTCGCGTCTTTGCGGTGGTGTCAACTTGCTGCTG
CGTGTGCATCTGTCGAGGATGGAACCCTGCCACGCTTCACCACATTGCAA
ACCGCCAACCACCAGCGCGAGGGACCGCATGGTCTCGAACGGCCAGGGTG
GCTCCACCCTGGCGACCCGACCACCCCAAAGCGGACACAGCCTTGGCAGC
AGCAGCCAGAGCGCCGCGTGATCCATGGGAAGCTGCCGCTGCCGAGCAGG
AGGCGCAAAAGAACGGCAGTGAAGGCGAAAAGAGGGTTATCCCACGATGG
GCCGGTATAGACCTCGCGTCTTTGCGGTGGTGTCAACTTGCTGCTGCGTG
TGCATCTGTCGAGGATGGAACCCTGCCACGCTTCACCACATTGCAAACCG
CCAACCACCAGCGCGAGGGACCGCATGGTCTCGAACGGCCAGGGTGGCTC
CACCCTGGCGACCCGACCACCCCAAAGCGGACACAGCCTTGGCAGCAGCA
GCCAGAGCGCCGCGTGATCCATGGGAAGCTGCCGCTGCCGAGCAGGAGGC
GCAAAAGAACGGCAGTGAAGGCGAAAAGAGGGTTATCCCACGGTTGAAGA
TGGATGATTCCCCAATCCCGGAACATCTGATCGACATGCTGAAAGAGTCG
GGAGACATCGACGAGGATGGTAATCCCGTCAACGATTTCTTCGATCCGGA
CGAGGACGACACGTTCGGCACACAGAGAGAGCGGGACCGCTTCACCGAAG
AGGTTGAAGATGGATGATTCCCCAATCCCGGAACATCTGATCGACATGCT
GAAAGAGTCGGGAGACATCGACGAGGATGGTAATCCCGTCAACGATTTCT
TCGATCCGGACGAGGACGACACGTTCGGCACACAGAGAGAGCGGGACCGC
TTCACCGAAGAGCAAAACTACTACAACGACGTGCCATTCGGAGATATGCT
TTTCGAGGGCAAGGCCGGCGACGATAACTCCGAATTCACGGGCAGCCTCA
TGGACACCTCCATCAACAACGCGGCGTTCGAGTTCGGGTTTCCGGTGGAG
TTTTTCCTCGACATGCTCTGTAGCAAAACTACTACAACGACGTGCCATTC
GGAGATATGCTTTTCGAGGGCAAGGCCGGCGACGATAACTCCGAATTCAC
GGGCAGCCTCATGGACACCTCCATCAACAACGCGGCGTTCGAGTTCGGGT
TTCCGGTGGAGTTTTTCCTCGACATGCTCTGTAGGTGGGAAGTAACGCTG
CCGATCAACCAAGATTGTCGGCTGGGAGACATGATCGACGCGGAGCAGGC
GGCGGCCCTGTGTGAAGCTCTCACGGGCCTAGATGCTTCGGATGTGAGAG
TGGGAAGTAACGCTGCCGATCAACCAAGATTGTCGGCTGGGAGACATGAT
CGACGCGGAGCAGGCGGCGGCCCTGTGTGAAGCTCTCACGGGCCTAGATG
CTTCGGATGTGAGA
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