mRNA_L-elsbetiae_contig1612.4205.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1612.4205.1
Unique NamemRNA_L-elsbetiae_contig1612.4205.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1612.4205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1612contigL-elsbetiae_contig1612:9323..10561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.6918237-CDS-L-elsbetiae_contig1612:9322..95291622815665.6918237-CDS-L-elsbetiae_contig1612:9322..9529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1612 9323..9529 -
1691683024.478404-CDS-L-elsbetiae_contig1612:9322..95291691683024.478404-CDS-L-elsbetiae_contig1612:9322..9529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1612 9323..9529 -
1622815665.7062023-CDS-L-elsbetiae_contig1612:10507..105611622815665.7062023-CDS-L-elsbetiae_contig1612:10507..10561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1612 10508..10561 -
1691683024.4895267-CDS-L-elsbetiae_contig1612:10507..105611691683024.4895267-CDS-L-elsbetiae_contig1612:10507..10561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1612 10508..10561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1612.4205.1prot_L-elsbetiae_contig1612.4205.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1612 9323..10561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1612.4205.1

>prot_L-elsbetiae_contig1612.4205.1 ID=prot_L-elsbetiae_contig1612.4205.1|Name=mRNA_L-elsbetiae_contig1612.4205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
VGGANGGVFSASDGSYLEITGGSFFGNKADFGGFLHKDGEGTVSCIGASV
VGNEAVDGGGLYVLGKATVEWACDLHTNSAQSGPAM*
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mRNA from alignment at L-elsbetiae_contig1612:9323..10561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1612.4205.1 ID=mRNA_L-elsbetiae_contig1612.4205.1|Name=mRNA_L-elsbetiae_contig1612.4205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1239bp|location=Sequence derived from alignment at L-elsbetiae_contig1612:9323..10561- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGCGGTGCCAATGGCGGCGTATTCTCCGCCAGCGACGGCAGCTACCT
CGAGGTAAGTGTGCCGGTGTGTGGTGCACTGGAATGCCCCGTCTTACCGT
CTCAGAACAAAAGTTATCGCAATAACGGTACATATCACGCCATCTAGCTG
CCCGCTGATTGCCCCGAGAGTTACAGTCCTCCCAAAACCAGGCTACAGGG
CCTCCCCAAAACTTGGTGGCACCTTCCATACTAAACCGCAGTTATACTTG
GCTGAAGGTTGGGATATAAGCTGCATACTCAAACCCAAATCAAAACAATG
TTCGCGTACCGGACAACACAGAGTTCGTTGTCTTTGGGACATGGAGTGGA
CCCTGGGCTGCTGCGTGTGTTTAACCCATGAAGCAGCCCCCAAAAAGCAC
AAAACAGCTTGGCGGGCGGAGGAATCCGCTCTAGGCTCAGCAGATGGTGG
TTCTCGAGAGTTATAGCGGGGCGGTGTGTGTGTGCTGTCAGCTCAACGGC
TCAATCGCAGGGGGTGCCGCGGAAAGCACCGAATATGGAATCGCAGAGAC
ATTTGTTTTTCGTGATTTTGGAGATATCCGCGACAACTCAGTTGTTCCCA
GCGCTGATGTGGAGCTGCGTGGAGGGCATTTATGGCGGTTATATTGTAGT
GTCCATATACCCCAGCAGGGCACTGCCAAGCCTTTTATCGGGTTCCAAAG
ACTAACTACCACTGCACCTCGAAGCCGTAGAGCATTGGCCAAAGTTAGGC
GTCACCAAATCGTCATCAAACGAGCGTCCCGTACTAAAAGGGTGAAGGCT
GCTTTGTTTTTGTCTTGTTTTTTCCTACGGATACATACCCATTTGTTTTC
GGGTCTTGCCGTCAGCGAGAGGGTTCTTGTCGTCAACGGAGATTTGCGTG
CCTGCGGGTCTTGGATCACCTGCAACACCGAGAAGACGCACTTGACGTGT
TTGTACCCAGAGTCCAGTTCCCACTCACTCCAAAATAAGTACATTAATCA
TTTCCGCCATACACGGACTCGCCACAACATAGATCACCGGAGGATCTTTC
TTCGGAAACAAGGCCGACTTTGGGGGGTTCTTGCACAAGGACGGGGAGGG
TACCGTATCGTGCATTGGGGCATCCGTCGTGGGCAACGAGGCAGTGGATG
GTGGTGGCTTGTATGTCCTCGGCAAAGCCACCGTGGAGTGGGCGTGCGAT
CTTCACACCAACTCCGCTCAGAGTGGACCAGCCATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1612:9323..10561-

>mRNA_L-elsbetiae_contig1612.4205.1 ID=mRNA_L-elsbetiae_contig1612.4205.1|Name=mRNA_L-elsbetiae_contig1612.4205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig1612:9323..10561- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGCGGTGCCAATGGCGGCGTATTCTCCGCCAGCGACGGCAGCTACCT
CGAGGTCGGCGGTGCCAATGGCGGCGTATTCTCCGCCAGCGACGGCAGCT
ACCTCGAGATCACCGGAGGATCTTTCTTCGGAAACAAGGCCGACTTTGGG
GGGTTCTTGCACAAGGACGGGGAGGGTACCGTATCGTGCATTGGGGCATC
CGTCGTGGGCAACGAGGCAGTGGATGGTGGTGGCTTGTATGTCCTCGGCA
AAGCCACCGTGGAGTGGGCGTGCGATCTTCACACCAACTCCGCTCAGAGT
GGACCAGCCATGTGAATCACCGGAGGATCTTTCTTCGGAAACAAGGCCGA
CTTTGGGGGGTTCTTGCACAAGGACGGGGAGGGTACCGTATCGTGCATTG
GGGCATCCGTCGTGGGCAACGAGGCAGTGGATGGTGGTGGCTTGTATGTC
CTCGGCAAAGCCACCGTGGAGTGGGCGTGCGATCTTCACACCAACTCCGC
TCAGAGTGGACCAGCCATGTGA
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