mRNA_L-elsbetiae_contig16101.4196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16101.4196.1
Unique NamemRNA_L-elsbetiae_contig16101.4196.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: D8LCG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.850e-30
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSE 192
            HR+ALKAALN+CVRLCVVAPTVNINLDDRSRSFCSGLPEE+IRAFVE SVLPRFTRVLLQPGSE
Sbjct:  443 HRKALKAALNNCVRLCVVAPTVNINLDDRSRSFCSGLPEERIRAFVEESVLPRFTRVLLQPGSE 506          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A7S3XWJ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWJ8_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 1.950e-12
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFC--SGLPEEKIRAFVERSVLPRFTRVLLQPGS 189
            H++AL+AALNS VRLCVVAPTVN+NL   +      + LPE KIR+FVE  +LP+F R+ LQ  S
Sbjct:  124 HKQALEAALNSVVRLCVVAPTVNVNLAAPAAPLAMKAPLPESKIRSFVEGEILPKFARIFLQRDS 188          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A024UK10_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK10_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.170e-7
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            H +AL+ A+ S VRLCVVAPTVN++L  +     + LP++ IR  V+R +LP F+ + LQ       + S+   W
Sbjct:  607 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKTVLPKDAIRTIVQRDILPVFSSIFLQAEEGTSPTGSSLDSW 681          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: W4FDP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDP1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.170e-7
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            H +AL+ A+ S VRLCVVAPTVN++L  +     + LP++ IR  V+R +LP F+ + LQ       + S+   W
Sbjct:  610 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKTVLPKDAIRTIVQRDILPVFSSIFLQDQEGTSPTGSSLDSW 684          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A485KJ64_9STRA (Aste57867_8007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJ64_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.380e-7
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQ 180
            H ++L+ A+ S VRLCVVAPTVN++L  +     S LP++ IR  V++ +LP F+ + LQ
Sbjct:  108 HAKSLEKAMQSLVRLCVVAPTVNVHLSGQVLPCKSVLPKDAIRTIVQKDILPVFSSIFLQ 167          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: T0S8Y2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S8Y2_SAPDV)

HSP 1 Score: 59.3 bits (142), Expect = 1.580e-7
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            H +AL+ A+ S VRLCVVAPTVN++L  +     S LP + IR+ V++ +LP F+ + LQ         S+   W
Sbjct:  566 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSVLPTDAIRSIVQKDILPVFSSIFLQHDEGTSSDGSSLDAW 640          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A7S3HDY8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDY8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-7
Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 RRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            ++AL+ A+ + VRLCVVAPTVN+++ D+   F +GL ++ +++F+   VL +++ +  Q G       S   +W
Sbjct:  399 KKALEKAITASVRLCVVAPTVNVHVSDKKLKFKAGLSQDSLKSFLSNEVLEKYSFLFKQKGENSAPDGSGLEQW 472          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A1W0A4L8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4L8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.080e-7
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            H +AL+ A+ S VRLCVVAPTVN++L  +     S LP + IR+ V++ +LP F+ + LQ       + S+   W
Sbjct:  445 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSVLPTDAIRSIVQKDILPVFSSIFLQQDEGISPTGSSLDTW 519          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A6G0XE29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE29_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.150e-7
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGV 219
            H +AL+ A+ S VRLCVVAPTVN++L  +     S LP++ IR  V+  +LP F+ + LQ   +E+ ++  G 
Sbjct:  572 HTKALEKAMQSLVRLCVVAPTVNVHLSGQILPCKSTLPKDAIRTIVQNDILPVFSSIFLQ---QEEGTSPTGT 641          
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Match: A0A0M0JX88_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX88_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.580e-6
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    4 RRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSVLPRFTRVLLQPGSEEKDSASAGVRW 225
            R  ++  + S VRLCVVAPTVN+    +  +  + +P+E+IR  +E+ VLP FTR   QP   +     +   W
Sbjct:  193 RSNMEDLMQSSVRLCVVAPTVNVTFGGQIHAHKAPMPKERIRQTLEKEVLPTFTRCFTQPHEAKAPDGGSMDEW 266          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16101.4196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LCG1_ECTSI1.850e-3093.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XWJ8_HETAK1.950e-1256.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024UK10_9STRA1.170e-740.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4FDP1_9STRA1.170e-740.00Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A485KJ64_9STRA1.380e-745.00Aste57867_8007 protein n=1 Tax=Aphanomyces stellat... [more]
T0S8Y2_SAPDV1.580e-740.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S3HDY8_9STRA2.050e-733.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1W0A4L8_9STRA2.080e-740.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XE29_9STRA2.150e-741.10Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0M0JX88_9EUKA2.580e-636.49Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16101contigL-elsbetiae_contig16101:3313..3735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue3.2e-26
Seed eggNOG ortholog2880.D8LCG1
Hectar predicted targeting categorymitochondrion
EggNOG OGs2D168@1,2SGVV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.1934388-CDS-L-elsbetiae_contig16101:3312..37351622815665.1934388-CDS-L-elsbetiae_contig16101:3312..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16101 3313..3735 +
1691683024.2963963-CDS-L-elsbetiae_contig16101:3312..37351691683024.2963963-CDS-L-elsbetiae_contig16101:3312..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16101 3313..3735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16101.4196.1prot_L-elsbetiae_contig16101.4196.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16101 3313..3735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16101.4196.1

>prot_L-elsbetiae_contig16101.4196.1 ID=prot_L-elsbetiae_contig16101.4196.1|Name=mRNA_L-elsbetiae_contig16101.4196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
HRRALKAALNSCVRLCVVAPTVNINLDDRSRSFCSGLPEEKIRAFVERSV
LPRFTRVLLQPGSEEKDSASAGVRWRRRRPSGHPSGGGDGGGNSGCTATL
QLARNAKRVPAVTSGPSSASSPSSFSSPPSSSIPCASQRSG
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mRNA from alignment at L-elsbetiae_contig16101:3313..3735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16101.4196.1 ID=mRNA_L-elsbetiae_contig16101.4196.1|Name=mRNA_L-elsbetiae_contig16101.4196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig16101:3313..3735+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGGCGGGCCCTCAAGGCTGCCCTCAACAGCTGCGTCCGCCTGTGCGT GGTCGCCCCGACCGTCAACATCAACCTCGACGACCGTAGCCGCTCCTTCT GCTCCGGCCTCCCGGAGGAAAAGATTCGCGCCTTCGTGGAACGATCGGTG CTGCCGCGGTTCACCCGGGTTCTCCTGCAGCCCGGCTCTGAAGAAAAAGA CTCCGCGTCAGCCGGGGTTCGTTGGCGGCGGCGGCGGCCTTCGGGCCACC CCAGCGGCGGCGGCGACGGCGGTGGCAACAGCGGGTGCACGGCTACGTTG CAGCTTGCACGCAACGCTAAACGAGTTCCTGCCGTCACGTCCGGGCCTTC TTCAGCGTCGTCGCCGTCGTCGTTTTCGTCTCCTCCCTCTTCCTCTATTC CTTGTGCATCCCAGCGTAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16101:3313..3735+

>mRNA_L-elsbetiae_contig16101.4196.1 ID=mRNA_L-elsbetiae_contig16101.4196.1|Name=mRNA_L-elsbetiae_contig16101.4196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig16101:3313..3735+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGGCGGGCCCTCAAGGCTGCCCTCAACAGCTGCGTCCGCCTGTGCGT
GGTCGCCCCGACCGTCAACATCAACCTCGACGACCGTAGCCGCTCCTTCT
GCTCCGGCCTCCCGGAGGAAAAGATTCGCGCCTTCGTGGAACGATCGGTG
CTGCCGCGGTTCACCCGGGTTCTCCTGCAGCCCGGCTCTGAAGAAAAAGA
CTCCGCGTCAGCCGGGGTTCGTTGGCGGCGGCGGCGGCCTTCGGGCCACC
CCAGCGGCGGCGGCGACGGCGGTGGCAACAGCGGGTGCACGGCTACGTTG
CAGCTTGCACGCAACGCTAAACGAGTTCCTGCCGTCACGTCCGGGCCTTC
TTCAGCGTCGTCGCCGTCGTCGTTTTCGTCTCCTCCCTCTTCCTCTATTC
CTTGTGCATCCCAGCGTAGCGGCCACAGGCGGGCCCTCAAGGCTGCCCTC
AACAGCTGCGTCCGCCTGTGCGTGGTCGCCCCGACCGTCAACATCAACCT
CGACGACCGTAGCCGCTCCTTCTGCTCCGGCCTCCCGGAGGAAAAGATTC
GCGCCTTCGTGGAACGATCGGTGCTGCCGCGGTTCACCCGGGTTCTCCTG
CAGCCCGGCTCTGAAGAAAAAGACTCCGCGTCAGCCGGGGTTCGTTGGCG
GCGGCGGCGGCCTTCGGGCCACCCCAGCGGCGGCGGCGACGGCGGTGGCA
ACAGCGGGTGCACGGCTACGTTGCAGCTTGCACGCAACGCTAAACGAGTT
CCTGCCGTCACGTCCGGGCCTTCTTCAGCGTCGTCGCCGTCGTCGTTTTC
GTCTCCTCCCTCTTCCTCTATTCCTTGTGCATCCCAGCGTAGCGGC
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