mRNA_L-elsbetiae_contig1610.4195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1610.4195.1
Unique NamemRNA_L-elsbetiae_contig1610.4195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1610.4195.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.150e-19
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:   28 IMVHMMVKASFIGNSTDYRVQFAQILVSLAVSMPGSIVIPKLFAAAAAPPASVAAK--GSWKAIVPSGERPS--AKSVSDAKAHKYMRWLHDSNSFVAVVRLVSAA 333
            I+VHM+V+AS + NST Y+++   I+VSLAVSMP SI+ PKLFAAAAAPP S+      +W+ IVP   + S  A+ ++ AKA+   RWL + N+ VAV RL+S+A
Sbjct:  479 ILVHMLVEASIVANSTSYKIRAVHIVVSLAVSMPASILFPKLFAAAAAPPPSITVTMLHAWEKIVPPTSQGSTTAQDMTYAKANSQSRWLREPNTVVAVFRLISSA 584
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BLAST of mRNA_L-elsbetiae_contig1610.4195.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.460e-10
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:  109 SLAVSMPGSIVIPKLFAAAAAPPASVAAK--GSWKAIVPSGERP--SAKSVSDAKAHKYMRWLHDSNSFVAVVRLVSAA 333
            SLAVSMP SI+IPKLFA AAAPP SV      +W+ IVPS  +   +A+ ++++KA+   RWL + N+ +AV RL+S+A
Sbjct: 1440 SLAVSMPASILIPKLFATAAAPPPSVTVTMLHAWEKIVPSTNQEVLTAQDMTNSKANSQTRWLREPNTVMAVFRLISSA 1518
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BLAST of mRNA_L-elsbetiae_contig1610.4195.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.450e-5
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   82 RVQFAQILVSLAVSMPGSIVIPKLFAAAAAPPASVAAKGSWKAIV 216
            +V++AQIL SLA ++P SIV+P+ FAA+A PP SV AK +W  +V
Sbjct:  921 KVEYAQILASLAATLPASIVVPRAFAASATPPPSVTAKRNWLQVV 965
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1610.4195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE1.150e-1950.94GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI2.460e-1050.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3A0_ECTSI4.450e-555.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1610contigL-elsbetiae_contig1610:22703..24736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D7G4X3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size336
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1610.4195.1prot_L-elsbetiae_contig1610.4195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1610 22703..24706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.107111-CDS-L-elsbetiae_contig1610:22702..227601622815665.107111-CDS-L-elsbetiae_contig1610:22702..22760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 22703..22760 -
1691683024.2417185-CDS-L-elsbetiae_contig1610:22702..227601691683024.2417185-CDS-L-elsbetiae_contig1610:22702..22760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 22703..22760 -
1622815665.1182022-CDS-L-elsbetiae_contig1610:23292..233601622815665.1182022-CDS-L-elsbetiae_contig1610:23292..23360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 23293..23360 -
1691683024.2620401-CDS-L-elsbetiae_contig1610:23292..233601691683024.2620401-CDS-L-elsbetiae_contig1610:23292..23360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 23293..23360 -
1622815665.1292806-CDS-L-elsbetiae_contig1610:23782..238821622815665.1292806-CDS-L-elsbetiae_contig1610:23782..23882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 23783..23882 -
1691683024.2702887-CDS-L-elsbetiae_contig1610:23782..238821691683024.2702887-CDS-L-elsbetiae_contig1610:23782..23882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 23783..23882 -
1622815665.1421819-CDS-L-elsbetiae_contig1610:24626..247061622815665.1421819-CDS-L-elsbetiae_contig1610:24626..24706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 24627..24706 -
1691683024.2800949-CDS-L-elsbetiae_contig1610:24626..247061691683024.2800949-CDS-L-elsbetiae_contig1610:24626..24706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1610 24627..24706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.1534882-UTR-L-elsbetiae_contig1610:24706..247361622815665.1534882-UTR-L-elsbetiae_contig1610:24706..24736Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1610 24707..24736 -
1691683024.2878883-UTR-L-elsbetiae_contig1610:24706..247361691683024.2878883-UTR-L-elsbetiae_contig1610:24706..24736Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1610 24707..24736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1610.4195.1

>prot_L-elsbetiae_contig1610.4195.1 ID=prot_L-elsbetiae_contig1610.4195.1|Name=mRNA_L-elsbetiae_contig1610.4195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MVHMMVKASFIGNSTDYRVQFAQILVSLAVSMPGSIVIPKLFAAAAAPPA
SVAAKGSWKAIVPSGERPSAKSVSDAKAHKYMRWLHDSNSFVAVVRLVSA
AA
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mRNA from alignment at L-elsbetiae_contig1610:22703..24736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1610.4195.1 ID=mRNA_L-elsbetiae_contig1610.4195.1|Name=mRNA_L-elsbetiae_contig1610.4195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig1610:22703..24736- (Laminarionema elsbetiae ELsaHSoW15)
CAGTTGTCCTTGCTCATTTTTTCATCCATCATGGTGCACATGATGGTCAA
AGCCTCGTTTATTGGGAACTCAACAGACTACAGAGTCCAGTTTGCGCAGA
TCTTGGTCAGGTGAGGGGGTTATCCGTCCAAGGCTGTAACGCCATAACTA
GCAGTATATGCCTTGGGGGATACATCTGTGGGCTAGATTGCATACTTCGA
GTATGTACTTATTATAAGTTTTTTGTCTTTCGGCAGACGAGTTTGGCAAC
GGCATCGTTTCTCGTTGACCCTTGCCTGCCTACTGTTATAAAAAAAATCA
GGATCTTTGTTGGCCTGCCTCTCTCGCTTCTTGGAAATTTCTTGGAAGCC
TCTTGCGAGCTTGATATGTTGGCATCTCGCGCTTGTTGAAAACCTCTTGG
AAGCTTATGAGGAGCGGATCTTTGGATCGCGTCTGCTGTTTTGCTTCTTG
AACGCTTTCGGGGGGCGTGGTGTGTTGGCATGTATCTGCTGCACTTGTTC
TCGCTCATTAGAACGATCGCCGCGACGAAACGGTCCCAACCTTGATTGCC
CCCTTCCCTAAGGAAGCATCTTGTAGATCTTTCTTTCGGCAACTTGCACG
TGCAGTGCACAGGCTGGAAAAAATGCAGAGTTGTTTTAGCTGCTGTAGGT
GTGGTGCTCGATGTAGATATATGTATCTGAGCTCGGCGTCAAATACCTAG
TCGACTCGTTTTGACGCGCTTTTGCCATTTGCTCTGACTACGTCTAGTTG
CCTTCCATGCACCGCAACCGGCAGTTTAATTCCGATCCTCCTGGCGGGGT
CTAATGCCAACCCCGCTCTGAACTGTCGTCCGCACCGTGTACTCGGATGC
CCAGCTTGGCCGTCTCGATGCCGGGTTCGATAGTCATCCCAAAGCTTTTC
GCGGCTGCGGCTGCCCCCCCTGCCTCTGTCGCGGCAAAAGGCTCGTGGAA
AGCGGTGAGGCATCGATATCTGTGTCAGTTCCCGGAAATGATAAAACGAA
GTGGAGAGGGGCATGGCTGAACTGACCGCTGCATCCATGGAGGCTCAACC
GAAGTGGGGCTGGTTGTGGTGTGAAAGGCGTTTTGTGAGAACAGCCTGGA
ACAAAAAACGACATCGCGAGGCACTGGTGCGAAGGTCACATCCAGCCTAT
TGGCGGCGGAAGTAGCGGTTGGCGCGGCTGAGACGGCGGTTCAAGGGCAA
TGGACGGCCTACCTGGCAGGCACCATCGGAACGCAGATCTGCGTCTTCAA
ACGGCATGACAGACCGGTTACCCAGACAATGCCCTTCTGAACCTTTTCCT
AAGGTGGCACGTTTTCCCTCTCTGTTCCTTGCACCGAAAGCTAACGTCGT
GCGTGCATCAAAACATTTTTTCGCAGATCGTCCCTTCCGGAGAACGGCCG
TCGGCAAAGAGTGTGTCCGACGCCAAGGCACACAAGTATATGAGGTGAGC
ACGCTCTGTGGTCGTGATCGCGTACCGGCTGCTTTGGTAGCAGCGAAGAA
GTTGTCTTCCGTATGCGGATCGGATAGATTCAACCGAACATATTTTGGAG
CTCTCGCAGCTGGACAGCGCTGCCTTAACATGTTTAGCACGATAGCTGGC
ACGCTACATAAGGGCTCGTCAGGAGACGGCAGAGACCAACGAACGGCATA
TGCACGCACGAGGCCACCGGCAGCACTATGGAAGAGTTTAGCACACCAAT
GGGATTGTTTGAACATGCGCCGGTTGATGACTGACAGCGACCAACGCGAA
ACTACTTTTGAGCGCACGTAGGCAACAGCTCGCGGAAGCGGCGGTGGCGG
TTGCTTCGGCGGTGGGGAGTTTAATTCCTCGAGACTCCCAAGCAGCGTCC
TGGCCATCAAGCCCTATTCTTGGAGGGAAACGCGTCGATCGGTACGGACC
ACAAGTGCACGAGAAAAATGCTAGCGGTGCTTGTTTTATCCAACACCAAC
TTTCGTGCCAATCCTTGGCCGCGCAGGTGGCTGCACGATTCGAACTCGTT
CGTGGCAGTAGTTCGTTTGGTCTCCGCTGCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1610:22703..24736-

>mRNA_L-elsbetiae_contig1610.4195.1 ID=mRNA_L-elsbetiae_contig1610.4195.1|Name=mRNA_L-elsbetiae_contig1610.4195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1610:22703..24736- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCACATGATGGTCAAAGCCTCGTTTATTGGGAACTCAACAGACTA
CAGAGTCCAGTTTGCGCAGATCTTGGTCAGATGGTGCACATGATGGTCAA
AGCCTCGTTTATTGGGAACTCAACAGACTACAGAGTCCAGTTTGCGCAGA
TCTTGGTCAGCTTGGCCGTCTCGATGCCGGGTTCGATAGTCATCCCAAAG
CTTTTCGCGGCTGCGGCTGCCCCCCCTGCCTCTGTCGCGGCAAAAGGCTC
GTGGAAAGCGCTTGGCCGTCTCGATGCCGGGTTCGATAGTCATCCCAAAG
CTTTTCGCGGCTGCGGCTGCCCCCCCTGCCTCTGTCGCGGCAAAAGGCTC
GTGGAAAGCGATCGTCCCTTCCGGAGAACGGCCGTCGGCAAAGAGTGTGT
CCGACGCCAAGGCACACAAGTATATGAGATCGTCCCTTCCGGAGAACGGC
CGTCGGCAAAGAGTGTGTCCGACGCCAAGGCACACAAGTATATGAGGTGG
CTGCACGATTCGAACTCGTTCGTGGCAGTAGTTCGTTTGGTCTCCGCTGC
CGCGGTGGCTGCACGATTCGAACTCGTTCGTGGCAGTAGTTCGTTTGGTC
TCCGCTGCCGCG
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