mRNA_L-elsbetiae_contig161.4191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig161.4191.1
Unique NamemRNA_L-elsbetiae_contig161.4191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig161.4191.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.480e-10
Identity = 58/75 (77.33%), Postives = 58/75 (77.33%), Query Frame = 2 
Query:  632 GDEGLGTIWSGTTTHPFDPGKAETDVPIDSNXXXXXXXXXXXXXXXXXXXHE--SEDEGLDETWSGTPTHPLDPG 850
            GDEGL  IWSG  THPFDPGKAE  V   S XXXXXXXXXXXXXXXXXXX    S DEGLDETWSG PTHP DPG
Sbjct: 1051 GDEGLDEIWSGAPTHPFDPGKAEGGVSSSSXXXXXXXXXXXXXXXXXXXXXXDGSGDEGLDETWSGAPTHPFDPG 1125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig161.4191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5A7_9PHAE9.480e-1077.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig161contigL-elsbetiae_contig161:29260..30309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size862
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig161.4191.1prot_L-elsbetiae_contig161.4191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig161 29654..30289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.3262029-UTR-L-elsbetiae_contig161:29259..293201622815664.3262029-UTR-L-elsbetiae_contig161:29259..29320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 29260..29320 +
1691683023.633004-UTR-L-elsbetiae_contig161:29259..293201691683023.633004-UTR-L-elsbetiae_contig161:29259..29320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 29260..29320 +
1622815664.3372033-UTR-L-elsbetiae_contig161:29508..296531622815664.3372033-UTR-L-elsbetiae_contig161:29508..29653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 29509..29653 +
1691683023.6437514-UTR-L-elsbetiae_contig161:29508..296531691683023.6437514-UTR-L-elsbetiae_contig161:29508..29653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 29509..29653 +
1622815664.356557-UTR-L-elsbetiae_contig161:30289..303091622815664.356557-UTR-L-elsbetiae_contig161:30289..30309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 30290..30309 +
1691683023.6637764-UTR-L-elsbetiae_contig161:30289..303091691683023.6637764-UTR-L-elsbetiae_contig161:30289..30309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig161 30290..30309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.346756-CDS-L-elsbetiae_contig161:29653..302891622815664.346756-CDS-L-elsbetiae_contig161:29653..30289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig161 29654..30289 +
1691683023.6539075-CDS-L-elsbetiae_contig161:29653..302891691683023.6539075-CDS-L-elsbetiae_contig161:29653..30289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig161 29654..30289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig161.4191.1

>prot_L-elsbetiae_contig161.4191.1 ID=prot_L-elsbetiae_contig161.4191.1|Name=mRNA_L-elsbetiae_contig161.4191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MERGYGTCVVVPAVQHMSSAAVESVPTAAVHAAELSLAVESQQYPVSVSQ
KVVVVQPPGELVFPEEPHVLGLLDDQCSGNGDELYARDTVVSVHRGGDVF
ELEVESVVFESDSQHAEGDRSNNNSSCSGSGNEGGDGSDGVTEMRVWVQS
GAVPRPTLSTPGRPRRTSPSTATVAAAAAAAATRTVTARRATMRARMRGW
MKPGVEPRRTP*
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mRNA from alignment at L-elsbetiae_contig161:29260..30309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig161.4191.1 ID=mRNA_L-elsbetiae_contig161.4191.1|Name=mRNA_L-elsbetiae_contig161.4191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig161:29260..30309+ (Laminarionema elsbetiae ELsaHSoW15)
ATACATAGCCAACGAGCGGCAAGAGAGAAGAGTAAAGCTGGAGATGCAGC
AGGAGGGAGAGGTGGGTGAGGTACTGTCAGTCAGAAGGCAGGTTTTCAGG
GGGGAGGCGGTCAAGCAGCCGCAAACAAGTAATTTTATCAACGATATGGA
GAGAAGAAACGCAAACGCTGGTACCTGGGCACGTTTGAATCCTACGCAAC
GGGAGTACTGCCTTATGTTACCACTACCCCACACGCGGCGTCGCAGCAGC
AGCAGCAGCAAGCAGTACAACTCCTGATATAACCGACGTGGCAGAAAGTG
CAGCAGCGTACGCACGCCGGGCCCATCACCGCGAACTGGAGTAAGGCGTA
CAGGTGCGACACATACATACACTGCTGAGTCCGAGTTGGGTCGAATGGAG
CGAGGCTATGGTACGTGTGTAGTTGTGCCTGCTGTTCAACACATGTCATC
TGCCGCGGTCGAGTCGGTGCCGACCGCGGCGGTACATGCGGCGGAATTAT
CACTTGCGGTGGAATCACAGCAATATCCTGTGTCGGTGTCTCAGAAAGTG
GTGGTGGTGCAGCCGCCGGGGGAGTTGGTCTTTCCGGAGGAACCTCACGT
TTTGGGACTACTGGATGACCAATGCAGCGGCAACGGCGATGAGCTGTATG
CTCGCGACACCGTGGTGTCTGTTCACCGCGGAGGCGACGTTTTCGAGCTG
GAGGTGGAATCTGTCGTTTTCGAGAGCGATAGCCAGCATGCTGAGGGGGA
CAGAAGCAACAACAACAGCAGCTGCAGCGGCAGCGGCAATGAGGGTGGTG
ATGGAAGTGACGGAGTGACGGAGATGAGGGTTTGGGTACAATCTGGAGCG
GTACCACGACCCACCCTTTCGACCCCGGGAAGGCCGAGACGGACGTCCCC
ATCGACAGCAACAGTAGCAGCAGCAGCAGCGGCAGCGGCAACGAGGACGG
TGACGGCAAGGAGAGCGACCATGAGAGCGAGGATGAGGGGCTGGATGAAA
CCTGGAGTGGAACCCCGACGCACCCCTTAGACCCGGGGGAGATCCCTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig161:29260..30309+

>mRNA_L-elsbetiae_contig161.4191.1 ID=mRNA_L-elsbetiae_contig161.4191.1|Name=mRNA_L-elsbetiae_contig161.4191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig161:29260..30309+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGAGGCTATGGTACGTGTGTAGTTGTGCCTGCTGTTCAACACAT
GTCATCTGCCGCGGTCGAGTCGGTGCCGACCGCGGCGGTACATGCGGCGG
AATTATCACTTGCGGTGGAATCACAGCAATATCCTGTGTCGGTGTCTCAG
AAAGTGGTGGTGGTGCAGCCGCCGGGGGAGTTGGTCTTTCCGGAGGAACC
TCACGTTTTGGGACTACTGGATGACCAATGCAGCGGCAACGGCGATGAGC
TGTATGCTCGCGACACCGTGGTGTCTGTTCACCGCGGAGGCGACGTTTTC
GAGCTGGAGGTGGAATCTGTCGTTTTCGAGAGCGATAGCCAGCATGCTGA
GGGGGACAGAAGCAACAACAACAGCAGCTGCAGCGGCAGCGGCAATGAGG
GTGGTGATGGAAGTGACGGAGTGACGGAGATGAGGGTTTGGGTACAATCT
GGAGCGGTACCACGACCCACCCTTTCGACCCCGGGAAGGCCGAGACGGAC
GTCCCCATCGACAGCAACAGTAGCAGCAGCAGCAGCGGCAGCGGCAACGA
GGACGGTGACGGCAAGGAGAGCGACCATGAGAGCGAGGATGAGGGGCTGG
ATGAAACCTGGAGTGGAACCCCGACGCACCCCTTAGATGGAGCGAGGCTA
TGGTACGTGTGTAGTTGTGCCTGCTGTTCAACACATGTCATCTGCCGCGG
TCGAGTCGGTGCCGACCGCGGCGGTACATGCGGCGGAATTATCACTTGCG
GTGGAATCACAGCAATATCCTGTGTCGGTGTCTCAGAAAGTGGTGGTGGT
GCAGCCGCCGGGGGAGTTGGTCTTTCCGGAGGAACCTCACGTTTTGGGAC
TACTGGATGACCAATGCAGCGGCAACGGCGATGAGCTGTATGCTCGCGAC
ACCGTGGTGTCTGTTCACCGCGGAGGCGACGTTTTCGAGCTGGAGGTGGA
ATCTGTCGTTTTCGAGAGCGATAGCCAGCATGCTGAGGGGGACAGAAGCA
ACAACAACAGCAGCTGCAGCGGCAGCGGCAATGAGGGTGGTGATGGAAGT
GACGGAGTGACGGAGATGAGGGTTTGGGTACAATCTGGAGCGGTACCACG
ACCCACCCTTTCGACCCCGGGAAGGCCGAGACGGACGTCCCCATCGACAG
CAACAGTAGCAGCAGCAGCAGCGGCAGCGGCAACGAGGACGGTGACGGCA
AGGAGAGCGACCATGAGAGCGAGGATGAGGGGCTGGATGAAACCTGGAGT
GGAACCCCGACGCACCCCTTAG
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