mRNA_L-elsbetiae_contig16086.4186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16086.4186.1
Unique NamemRNA_L-elsbetiae_contig16086.4186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16086.4186.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.230e-41
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 3 
Query:    3 LLSMVPPTIEALMDIMEGSKDLTELLDNDVVQDVTDQTRGLVEQVIKKVEELNAAGNPDEKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSR 284
            LLSMVPPTIEALMDIMEGSKDLTELL N+V  DV DQTR LV+QVIKKVE+L  +GNPDEKD+DRYLKAHDDLQTVLRVY+ V+DG+E LPLSR
Sbjct:  261 LLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSR 354
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BLAST of mRNA_L-elsbetiae_contig16086.4186.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.820e-40
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 3 
Query:    3 LLSMVPPTIEALMDIMEGSKDLTELLDNDVVQDVTDQTRGLVEQVIKKVEELNAAGNPDEKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSR 284
            LLSMVPPTIEALMDIMEGSKDLTELL N+V  DV DQTR LV+QVIKKVE+L  +GNPDEKD+DRYLKAHDDLQTVLRVY+ V+DG+E LPLSR
Sbjct:  266 LLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSR 359
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16086.4186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH3_ECTSI1.230e-4181.91VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQS7_9PHAE1.820e-4081.91VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16086contigL-elsbetiae_contig16086:589..2416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-21_004690.2
Exons2
Model size287
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16086.4186.1prot_L-elsbetiae_contig16086.4186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16086 600..2416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.0565705-UTR-L-elsbetiae_contig16086:588..5991622815664.0565705-UTR-L-elsbetiae_contig16086:588..599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16086 589..599 +
1691683023.412844-UTR-L-elsbetiae_contig16086:588..5991691683023.412844-UTR-L-elsbetiae_contig16086:588..599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16086 589..599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.0720437-CDS-L-elsbetiae_contig16086:599..7341622815664.0720437-CDS-L-elsbetiae_contig16086:599..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16086 600..734 +
1691683023.429718-CDS-L-elsbetiae_contig16086:599..7341691683023.429718-CDS-L-elsbetiae_contig16086:599..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16086 600..734 +
1622815664.0838737-CDS-L-elsbetiae_contig16086:2275..24161622815664.0838737-CDS-L-elsbetiae_contig16086:2275..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16086 2276..2416 +
1691683023.4426658-CDS-L-elsbetiae_contig16086:2275..24161691683023.4426658-CDS-L-elsbetiae_contig16086:2275..2416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16086 2276..2416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16086.4186.1

>prot_L-elsbetiae_contig16086.4186.1 ID=prot_L-elsbetiae_contig16086.4186.1|Name=mRNA_L-elsbetiae_contig16086.4186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MVPPTIEALMDIMEGSKDLTELLDNDVVQDVTDQTRGLVEQVIKKVEELN
AAGNPDEKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSRG
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mRNA from alignment at L-elsbetiae_contig16086:589..2416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16086.4186.1 ID=mRNA_L-elsbetiae_contig16086.4186.1|Name=mRNA_L-elsbetiae_contig16086.4186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1828bp|location=Sequence derived from alignment at L-elsbetiae_contig16086:589..2416+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTGCTGAGCATGGTGCCCCCAACGATCGAGGCCCTGATGGACATCATG
GAGGGGAGCAAGGACCTGACCGAGCTGCTCGACAACGACGTCGTCCAAGA
CGTGACGGATCAGACCAGAGGGCTGGTGGAGCAGGTCATCAAGAAGGTGT
GTGTTTTTGTGTCGTCAAAAAAAGGTACCATGCGTATTTTGTGCCATTAA
TTAGGTGTGCGTTTTCGTTAATGTATACATACGTTGACGAGGGAAAGGGA
CAGCTGGACCCTTCTCGCGATAAAACCCAAGGCAAGAACCGCTGAAGGAA
GGTGGAGCAAAAAAATAAAATAAAATAGAAGAAAAAAAAACAGTGTTCAC
CTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAAAGCACTG
CAAAGTGTAGTACCTCGAAGTACACCGCAAGGTGTAGTACACGTCTCCAC
TCGGAGGGACTGTCGCCAAAATAAATGGGAAACACACACATACACACACA
TACAAATGTCAGCAGTCTAGTACGTCCAGTCTGAGAAAAAGTCGTTCCAA
AGGGGGACTGTCGTAGACATAGAAGTACATGCTGCTGTGTTTTGTGTCAT
AAGAAGGTGTGTGTTGGGTTGGATTGGGGGGGGGGGGCTCTTTCTCTCGC
CTTGCGTCGACCTCCGTGCTCGCTTACTCGCTCGCTCGCGTGCGTGCGTG
CGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCG
TGGCCCTCGCGTATACGTGCGGGGAATCGTCCCGCAAGGGGGAGGAGGGG
GGGGGGGGGGGCCCGAAATCGGCACGGGGGGGGGGGGGGGGCCCCGGCGA
AAAAGAGGGAAAAGGGGGGGAGGAGGGGGNNNNNNNNNNGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCACGAAATCGTCACGCGAG
GGAGGGGGTGGCCCCGACTGAAAAGAGTGAAATTGGGCAGAGAAGGTGGC
CAAGGGATATGTTTTGGGTGCGCTTTTTCTCCGGCACGAACGGGGCCACG
CTATCTAGACTTTGGGTGGGGGTGTGCTTGCTGGTGCTGCTGCGCCTGCC
TGCCTCTGCGCCGTAATTTGGGCTCGCTATTTTGCCACGAGCGTGTCCGC
CGAGCGTATTTTGTATTTTCGGTGTCCTTTGTGTGTGTACTTGCGTGCTT
GAGCACAGACCGGAGGTCACAAGGTCTCACAAATGTCACGAGAGTACGTC
GCGTTGAGCCTGCCTGACTTCGCGGCCAGAATATATACTTTAATGTATGC
CAATGCGGTCTCGTTATTAATAATTGTAAGGCAACGAGATGTTTGTTGTC
GGATCGGGTGGATGTAAGATTTTTTGCTCTCATGAAGTTATCAGATACTT
CTGACTGCTGCTGTTGCCGTGAGTGCAGGAGCTACAGCGGTAGCGGTTGG
TGTGCCGCCACGCCCGCAAGGACCGAGCGGGAAGGCGAGGCAAGGCAAGG
CAGGCAGGCAGCAGAAGTGTTGAAAGTTTCCGGACGAACGTCGAACACTG
CAAATAATTAATTTGAGTCGATGCATGTCCTCCGTCTCCTTTTTTTGCTC
CTCCCACCCCACACACTCGTCCTCCGCGCGAAAAAAGGTCGAGGAGCTCA
ACGCGGCGGGGAACCCGGACGAGAAGGATATGGACCGGTACCTTAAGGCG
CACGACGACCTGCAGACGGTCCTCCGCGTTTACGACGCCGTCCTAGACGG
CAACGAGCCCCTGCCTCTCTCGCGTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16086:589..2416+

>mRNA_L-elsbetiae_contig16086.4186.1 ID=mRNA_L-elsbetiae_contig16086.4186.1|Name=mRNA_L-elsbetiae_contig16086.4186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig16086:589..2416+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCCCCAACGATCGAGGCCCTGATGGACATCATGGAGGGGAGCAA
GGACCTGACCGAGCTGCTCGACAACGACGTCGTCCAAGACGTGACGGATC
AGACCAGAGGGCTGGTGGAGCAGGTCATCAAGAAGATGGTGCCCCCAACG
ATCGAGGCCCTGATGGACATCATGGAGGGGAGCAAGGACCTGACCGAGCT
GCTCGACAACGACGTCGTCCAAGACGTGACGGATCAGACCAGAGGGCTGG
TGGAGCAGGTCATCAAGAAGGTCGAGGAGCTCAACGCGGCGGGGAACCCG
GACGAGAAGGATATGGACCGGTACCTTAAGGCGCACGACGACCTGCAGAC
GGTCCTCCGCGTTTACGACGCCGTCCTAGACGGCAACGAGCCCCTGCCTC
TCTCGCGTGGAGTCGAGGAGCTCAACGCGGCGGGGAACCCGGACGAGAAG
GATATGGACCGGTACCTTAAGGCGCACGACGACCTGCAGACGGTCCTCCG
CGTTTACGACGCCGTCCTAGACGGCAACGAGCCCCTGCCTCTCTCGCGTG
GA
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