mRNA_L-elsbetiae_contig16081.4185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16081.4185.1
Unique NamemRNA_L-elsbetiae_contig16081.4185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: D7FNY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNY9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.980e-28
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   28 RKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTT 231
            RKQILDQIMTVEARLRLSNIAMVKP+KARRVEEMLIHAA SG LGGKVTEDQFIQMLEQV  + +  T
Sbjct:   42 RKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQVSSQMEKKT 109          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: L8GJP2_ACACA (Double-stranded DNA-binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJP2_ACACA)

HSP 1 Score: 79.3 bits (194), Expect = 2.600e-17
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   22 ERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTTV 234
            ERR+QIL QI+T EAR R++ I++VKPEKAR+VE+M+I AA+SG LGGKV E   I +L+Q+  K Q+T +
Sbjct:   42 ERRRQILAQILTAEARERMARISLVKPEKARQVEDMIIGAAQSGQLGGKVNEANLISLLDQISEKQQHTKI 112          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: A0A835Z9S3_9STRA (Double-stranded DNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.810e-17
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   22 ERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTT 231
            ++R+ ILDQIM  EAR RL+NIAMVK +KAR +E+MLI AAK G LGGKV+++QF+QMLE V  + +  T
Sbjct:   34 DQRRSILDQIMMPEARERLNNIAMVKKDKARALEDMLISAAKQGKLGGKVSQEQFVQMLEGVSAQMERKT 103          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: F4PGL7_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGL7_CAVFA)

HSP 1 Score: 74.7 bits (182), Expect = 1.230e-15
Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    4 QEQQEQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTTV 234
            Q+++++ERR+ I+ QI+T +AR RLS IAMVKP+KAR++E+ML++AA++G L  KV E + I +LEQ+  K + TTV
Sbjct:   23 QKREQEERRQHIILQILTHDARERLSRIAMVKPDKARQIEDMLVNAAQTGRLSEKVDEQKLISLLEQISEKAKKTTV 99          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: B3RV51_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RV51_TRIAD)

HSP 1 Score: 74.3 bits (181), Expect = 4.380e-15
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   16 EQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTT 231
            E E +  IL QI+  +AR RL++IA+VKPEKA  +E MLI+ AK+G LGGKV+E Q I++LE+V  KTQ  T
Sbjct:   69 EAEAKNSILSQILAQDARTRLNSIALVKPEKASMIENMLINMAKTGQLGGKVSEAQLIKLLEEVNSKTQKRT 140          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: A7S2W2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S2W2_NEMVE)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   16 EQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTTV 234
            E E R  +L QI+   AR RL++IA+VKPEKAR VE MLI  A+SG +GGKV E Q + +LE+V+ K Q TTV
Sbjct:   44 EMEMRNAMLTQILDQSARARLNSIALVKPEKARMVENMLIQMARSGQVGGKVGETQLVGLLEKVQDKAQKTTV 116          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: A0A4P9YSF9_9FUNG (PDCD5-related protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YSF9_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 2.260e-14
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   13 QEQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTT 231
            Q +E R+ +L QI+  EAR RL+ IAMVKPEKAR +E++LI  A+SG L G+VTE Q +++LE +  ++Q++T
Sbjct:    2 QAEEMRRTMLSQILNNEARERLARIAMVKPEKARAMEDLLIRMARSGQLRGQVTEKQLVELLENINQQSQSST 74          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: A0A2V3IU46_9FLOR (Programmed cell death protein 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU46_9FLOR)

HSP 1 Score: 72.0 bits (175), Expect = 2.590e-14
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 QEQQEQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTT 231
            QE+ +Q++R+ IL+QIMT EAR +L+NI +VKPE+A +VE  LI++A+SG LGGKV EDQ   +L  V  +TQ  T
Sbjct:   39 QEEAKQDQRRMILNQIMTPEAREKLANIRLVKPERAEQVETYLINSAQSGQLGGKVGEDQVKDLLRSVTEQTQKRT 114          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: A0A8J4PU08_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PU08_9MYCE)

HSP 1 Score: 70.9 bits (172), Expect = 2.960e-14
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   22 ERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTTV 234
            ERR+ IL QI+T +AR RLS IAMV+PEKAR+VE+++I AA+ G L  KV E + I +LEQ+  K   TT+
Sbjct:   24 ERRQHILVQILTPQARERLSRIAMVRPEKARQVEDLIIAAAQRGQLAEKVDEPKLISLLEQISEKAPKTTI 94          
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Match: UPI00193A383A (programmed cell death protein 5-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A383A)

HSP 1 Score: 70.9 bits (172), Expect = 5.520e-14
Identity = 36/66 (54.55%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   37 ILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKSGALGGKVTEDQFIQMLEQVRLKTQNTTV 234
            +L QI+T +AR RL++IA+VKPEKA+++E MLI+ A+SG LG K+TE Q +++LEQ+  K Q T V
Sbjct:   44 MLTQILTQDARARLNSIALVKPEKAKQLEGMLINMARSGQLGEKMTEQQLVKVLEQINDKKQRTKV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16081.4185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY9_ECTSI1.980e-2885.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L8GJP2_ACACA2.600e-1757.75Double-stranded DNA-binding domain containing prot... [more]
A0A835Z9S3_9STRA2.810e-1760.00Double-stranded DNA-binding domain-containing prot... [more]
F4PGL7_CAVFA1.230e-1551.95Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
B3RV51_TRIAD4.380e-1555.56Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A7S2W2_NEMVE1.180e-1456.16Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A4P9YSF9_9FUNG2.260e-1450.68PDCD5-related protein (Fragment) n=1 Tax=Syncephal... [more]
A0A2V3IU46_9FLOR2.590e-1453.95Programmed cell death protein 5 n=1 Tax=Gracilario... [more]
A0A8J4PU08_9MYCE2.960e-1454.93Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00193A383A5.520e-1454.55programmed cell death protein 5-like n=1 Tax=Styel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16081contigL-elsbetiae_contig16081:1362..1915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7FNY9
Preferred namePDCD5
KEGG rclassRC00726
KEGG koko:K00077,ko:K03354,ko:K03860,ko:K05389,ko:K06875
KEGG TC1.A.1.7
KEGG ReactionR02472,R05916
KEGG Pathwayko00563,ko00770,ko01100,ko01110,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00563,map00770,map01100,map01110,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00119,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005539,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006979,GO:0008047,GO:0008092,GO:0008150,GO:0008201,GO:0008219,GO:0008285,GO:0009636,GO:0009719,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010421,GO:0010468,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010698,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015631,GO:0019222,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0036473,GO:0036474,GO:0042127,GO:0042221,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0048487,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070301,GO:0070848,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0080090,GO:0090087,GO:0090199,GO:0090200,GO:0090316,GO:0097159,GO:0097237,GO:0097367,GO:0097468,GO:0098772,GO:1901363,GO:1901681,GO:1901700,GO:1901701,GO:1903214,GO:1903332,GO:1903333,GO:1903533,GO:1903636,GO:1903638,GO:1903644,GO:1903645,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904589,GO:1904591,GO:1904951,GO:1905475,GO:1905477,GO:2000116,GO:2001056,GO:2001233,GO:2001235
EggNOG free text desc.regulation of protein import into mitochondrial outer membrane
EggNOG OGsCOG2118@1,KOG3431@2759
EC1.1.1.169
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04040,ko04121
Ec32 ortholog descriptionPDCD5-related protein
Ec32 orthologEc-10_004870.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.9993305-CDS-L-elsbetiae_contig16081:1361..15101622815663.9993305-CDS-L-elsbetiae_contig16081:1361..1510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16081 1362..1510 -
1691683023.3897126-CDS-L-elsbetiae_contig16081:1361..15101691683023.3897126-CDS-L-elsbetiae_contig16081:1361..1510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16081 1362..1510 -
1622815664.017996-CDS-L-elsbetiae_contig16081:1827..19151622815664.017996-CDS-L-elsbetiae_contig16081:1827..1915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16081 1828..1915 -
1691683023.4042056-CDS-L-elsbetiae_contig16081:1827..19151691683023.4042056-CDS-L-elsbetiae_contig16081:1827..1915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16081 1828..1915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16081.4185.1prot_L-elsbetiae_contig16081.4185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16081 1362..1915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16081.4185.1

>prot_L-elsbetiae_contig16081.4185.1 ID=prot_L-elsbetiae_contig16081.4185.1|Name=mRNA_L-elsbetiae_contig16081.4185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
SQEQQEQERRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLIHAAKS
GALGGKVTEDQFIQMLEQVRLKTQNTTVF
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mRNA from alignment at L-elsbetiae_contig16081:1362..1915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16081.4185.1 ID=mRNA_L-elsbetiae_contig16081.4185.1|Name=mRNA_L-elsbetiae_contig16081.4185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=554bp|location=Sequence derived from alignment at L-elsbetiae_contig16081:1362..1915- (Laminarionema elsbetiae ELsaHSoW15)
TCACAGGAGCAACAGGAACAGGAACGACGAAAGCAAATTCTGGACCAAAT CATGACCGTCGAAGCACGGCTCCGCCTGAGCAACATCGGTGCGTTCCTGG TCATGGGCGGTGTCTTTGTCGTCGCGCTTTGAGTCCTTCCATTGGTTTCG TGGAAGTTAAAGTTTCCTCGGGCCGCGGCCGTCGTGCAGGAGGGTTTCTT CTCAGGTTTGTCATACATACTACTGTATTGCAGTTTTTTTCCCCAGCGAA AGTCAGCCCGACAGCACGTGGTCGTCGCTCAGCCAGTGACTTGCGCTGTG GATGGTGCGCACCGCCGTTGCTTTCGACGCATGCTAAATGCCTGCCTGGA CCGCCGTGCTCTCGCGGCCGTAAACGTATTCCTTCTCTGTCGTTCTCGCG CACAGCCATGGTGAAGCCAGAGAAGGCGAGACGTGTGGAGGAAATGTTGA TTCACGCCGCCAAGTCGGGAGCCCTGGGGGGCAAGGTCACCGAGGACCAG TTCATCCAGATGCTCGAGCAGGTGAGACTAAAAACTCAAAACACCACCGT CTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16081:1362..1915-

>mRNA_L-elsbetiae_contig16081.4185.1 ID=mRNA_L-elsbetiae_contig16081.4185.1|Name=mRNA_L-elsbetiae_contig16081.4185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig16081:1362..1915- (Laminarionema elsbetiae ELsaHSoW15)
TCACAGGAGCAACAGGAACAGGAACGACGAAAGCAAATTCTGGACCAAAT
CATGACCGTCGAAGCACGGCTCCGCCTGAGCAACATCGTCACAGGAGCAA
CAGGAACAGGAACGACGAAAGCAAATTCTGGACCAAATCATGACCGTCGA
AGCACGGCTCCGCCTGAGCAACATCGCCATGGTGAAGCCAGAGAAGGCGA
GACGTGTGGAGGAAATGTTGATTCACGCCGCCAAGTCGGGAGCCCTGGGG
GGCAAGGTCACCGAGGACCAGTTCATCCAGATGCTCGAGCAGGTGAGACT
AAAAACTCAAAACACCACCGTCTTTCCATGGTGAAGCCAGAGAAGGCGAG
ACGTGTGGAGGAAATGTTGATTCACGCCGCCAAGTCGGGAGCCCTGGGGG
GCAAGGTCACCGAGGACCAGTTCATCCAGATGCTCGAGCAGGTGAGACTA
AAAACTCAAAACACCACCGTCTTT
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