mRNA_L-elsbetiae_contig1606.4173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1606.4173.1
Unique NamemRNA_L-elsbetiae_contig1606.4173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 7.520e-66
Identity = 111/120 (92.50%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    4 VDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRAAAGLEPLLEA 363
            +DD QPTTKKLKITAIPFSKGTQFGVDDVHELASIVAD   PGEMVRLPKARAMFASRACRSS MIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS SLR AAGLEPLL A
Sbjct:  788 IDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAGLEPLLTA 907          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A7S2RTW0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTW0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.140e-39
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    4 VDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEM----VRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 318
            VD++ P T++LK+  +PFSK TQFGVDD+HELASI+AD  +        ++LPK R MFASRACRSS+MIG ALD   MA++V K+ +IEQPWNCPHGRPTMRHL +++
Sbjct:   74 VDEAAPPTQRLKLEKVPFSKTTQFGVDDIHELASIIADLPSDSAAGYSDLQLPKIRMMFASRACRSSVMIGTALDVPAMAKIVRKLESIEQPWNCPHGRPTMRHLTELT 182          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: I2CR37_NANGC (MutL_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR37_NANGC)

HSP 1 Score: 135 bits (341), Expect = 1.280e-37
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNT----------PGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 318
            ++D      +++K+ ++P+SKG QFG+ D+HELAS++ D++           P   VRLPK RAMFASRACR SIMIGKAL + QM +VVA +A IEQPWNCPHGRPTMRHL D+S
Sbjct:  106 RLDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQMQKVVANLAEIEQPWNCPHGRPTMRHLVDLS 221          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A6A5AM97_9STRA (MutL_C domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM97_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.910e-37
Identity = 62/110 (56.36%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTN--TPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSKS 324
            QVD + P T+KL++ ++PFSK TQ+GVDDV EL S+V ++        +RLPK  AMFASRACRS++MIG AL +  M ++V ++A +EQPWNCPHGRPTMRHL D+S +
Sbjct:   84 QVDPAAPVTQKLRLISVPFSKHTQWGVDDVRELVSLVLESPHAAAAATIRLPKTLAMFASRACRSAVMIGTALKREDMQKIVVQLAELEQPWNCPHGRPTMRHLVDLSST 193          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A485LCN4_9STRA (Aste57867_19480 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCN4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.840e-37
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSK 321
            QVD+  P T+KLK+ ++PFSK TQ+GVDDV EL S++ +   P   +RLPK  AMFASRACRS++MIG AL K +M ++V ++A +EQPWNCPHGRPTMRHL D+S+
Sbjct:  657 QVDEGAPVTQKLKLISLPFSKHTQWGVDDVRELVSLLLENPHPPSTIRLPKTLAMFASRACRSAVMIGTALKKEEMQKIVGQLADLEQPWNCPHGRPTMRHLVDLSE 763          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A835YM26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM26_9STRA)

HSP 1 Score: 142 bits (357), Expect = 8.240e-37
Identity = 75/147 (51.02%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    4 VDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVAD-----------------------------TNTPG--------EMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRA 333
            V++ +P  ++L++TA+PFSKG QFG  DVHELASIVAD                             T+TP         + +RLPK  AMFA RACRSSIM+G ALD  QM R+VA +A +EQPWNCPHGRPT+RHLADVS+SLR+
Sbjct:  634 VEEGEPAGRRLRLTAVPFSKGAQFGARDVHELASIVADAHGSRARIRRNPHFYSHITRAPESHTYLHTHTPPPHTRARRLDEIRLPKLHAMFAMRACRSSIMVGTALDAAQMGRLVAALAGVEQPWNCPHGRPTLRHLADVSRSLRS 780          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A024UUQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUQ3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.690e-36
Identity = 64/114 (56.14%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRAAAG 342
            QVD S   T+KLK+ ++PFSK TQ+GVDDV EL S+V ++      +RLPK  AMFASRACRS++MIG AL + +M +++ ++A +EQPWNCPHGRPTMRHL D+S +L++  G
Sbjct:  713 QVDPSAAATQKLKLISVPFSKHTQWGVDDVRELVSLVLESPHAASTIRLPKTLAMFASRACRSAVMIGTALKRDEMQKILLQLAELEQPWNCPHGRPTMRHLVDLSCTLQSQKG 826          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A8K1C3K6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3K6_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 2.630e-35
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 VDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSK 321
            V    P TKKL++ ++PFSK TQFGVDD+ ELAS++ +T      ++LPK  AM ASRACRSSIMIG AL K +M R+V  + T+EQPWNCPHGRPT+RHLAD+++
Sbjct:  684 VQKEAPPTKKLQLVSLPFSKQTQFGVDDIRELASLLMETPLQRSAIQLPKRMAMLASRACRSSIMIGTALHKEEMTRIVRNLTTLEQPWNCPHGRPTLRHLADLAQ 789          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A6G0XYA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYA5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.530e-35
Identity = 65/108 (60.19%), Postives = 87/108 (80.56%), Query Frame = 1
Query:    1 QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADT-NTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSK 321
            QVD+S   T+KLK+ ++PFSK TQ+GVDDV EL S++ ++ NTP   +RLPK  AMFASRACRS++MIG AL + +M ++V ++A +EQPWNCPHGRPTMRHL D+S+
Sbjct:  671 QVDESANVTEKLKLISVPFSKQTQWGVDDVRELVSLLLESPNTPAT-IRLPKTLAMFASRACRSAVMIGTALKRDEMQKIVLQLAELEQPWNCPHGRPTMRHLVDLSE 777          
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Match: A0A1V9ZL08_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL08_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.910e-35
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    4 VDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLPKARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 318
            VD S P T+KL++TA+PFSK T FGV DV ELAS++ +     + +RLPK  AMFASRACRS++MIG AL K +M ++V ++A+++QPWNCPHGRPTMRHL D++
Sbjct:  662 VDASAPATEKLRLTAVPFSKHTTFGVADVRELASLLLEAPHQAQTLRLPKVTAMFASRACRSAVMIGTALHKEEMLKIVTQLASLDQPWNCPHGRPTMRHLVDLN 766          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1606.4173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI7.520e-6692.50Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
A0A7S2RTW0_9STRA1.140e-3960.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CR37_NANGC1.280e-3756.03MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A6A5AM97_9STRA4.910e-3756.36MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A485LCN4_9STRA5.840e-3759.81Aste57867_19480 protein n=1 Tax=Aphanomyces stella... [more]
A0A835YM26_9STRA8.240e-3751.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024UUQ3_9STRA5.690e-3656.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1C3K6_PYTOL2.630e-3559.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XYA5_9STRA3.530e-3560.19Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9ZL08_9STRA3.910e-3559.05Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1606contigL-elsbetiae_contig1606:440..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.2
Seed ortholog evalue3.4e-56
Seed eggNOG ortholog2880.D7FV66
Preferred namePms1
KEGG koko:K10858
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1978@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.1420898-CDS-L-elsbetiae_contig1606:439..8051622815663.1420898-CDS-L-elsbetiae_contig1606:439..805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1606 440..805 +
1691683022.8404667-CDS-L-elsbetiae_contig1606:439..8051691683022.8404667-CDS-L-elsbetiae_contig1606:439..805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1606 440..805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1606.4173.1prot_L-elsbetiae_contig1606.4173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1606 440..805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1606.4173.1

>prot_L-elsbetiae_contig1606.4173.1 ID=prot_L-elsbetiae_contig1606.4173.1|Name=mRNA_L-elsbetiae_contig1606.4173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
QVDDSQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADTNTPGEMVRLP
KARAMFASRACRSSIMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMR
HLADVSKSLRAAAGLEPLLEA*
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mRNA from alignment at L-elsbetiae_contig1606:440..805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1606.4173.1 ID=mRNA_L-elsbetiae_contig1606.4173.1|Name=mRNA_L-elsbetiae_contig1606.4173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:440..805+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAGACGACAGCCAGCCCACGACGAAAAAACTCAAAATCACAGCGAT TCCCTTCAGCAAAGGCACGCAGTTTGGCGTGGATGATGTCCACGAGCTGG CATCTATCGTGGCCGACACCAACACTCCAGGCGAGATGGTCAGACTGCCG AAAGCGCGTGCCATGTTCGCAAGCCGTGCCTGCCGAAGCTCAATCATGAT TGGAAAGGCCTTGGACAAGGGACAGATGGCCCGGGTGGTGGCGAAAATGG CGACTATCGAACAGCCTTGGAACTGCCCACATGGCCGCCCGACGATGCGA CATCTAGCGGACGTGTCCAAGAGCTTGCGCGCAGCAGCAGGGTTGGAGCC GCTGCTGGAGGCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1606:440..805+

>mRNA_L-elsbetiae_contig1606.4173.1 ID=mRNA_L-elsbetiae_contig1606.4173.1|Name=mRNA_L-elsbetiae_contig1606.4173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1606:440..805+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAGACGACAGCCAGCCCACGACGAAAAAACTCAAAATCACAGCGAT
TCCCTTCAGCAAAGGCACGCAGTTTGGCGTGGATGATGTCCACGAGCTGG
CATCTATCGTGGCCGACACCAACACTCCAGGCGAGATGGTCAGACTGCCG
AAAGCGCGTGCCATGTTCGCAAGCCGTGCCTGCCGAAGCTCAATCATGAT
TGGAAAGGCCTTGGACAAGGGACAGATGGCCCGGGTGGTGGCGAAAATGG
CGACTATCGAACAGCCTTGGAACTGCCCACATGGCCGCCCGACGATGCGA
CATCTAGCGGACGTGTCCAAGAGCTTGCGCGCAGCAGCAGGGTTGGAGCC
GCTGCTGGAGGCCTGACAGGTAGACGACAGCCAGCCCACGACGAAAAAAC
TCAAAATCACAGCGATTCCCTTCAGCAAAGGCACGCAGTTTGGCGTGGAT
GATGTCCACGAGCTGGCATCTATCGTGGCCGACACCAACACTCCAGGCGA
GATGGTCAGACTGCCGAAAGCGCGTGCCATGTTCGCAAGCCGTGCCTGCC
GAAGCTCAATCATGATTGGAAAGGCCTTGGACAAGGGACAGATGGCCCGG
GTGGTGGCGAAAATGGCGACTATCGAACAGCCTTGGAACTGCCCACATGG
CCGCCCGACGATGCGACATCTAGCGGACGTGTCCAAGAGCTTGCGCGCAG
CAGCAGGGTTGGAGCCGCTGCTGGAGGCCTGA
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