mRNA_L-elsbetiae_contig16051.4171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16051.4171.1
Unique NamemRNA_L-elsbetiae_contig16051.4171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16051.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16051contigL-elsbetiae_contig16051:845..2471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.0129042-CDS-L-elsbetiae_contig16051:846..9311622815663.0129042-CDS-L-elsbetiae_contig16051:846..931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16051 847..931 -
1691683022.7893882-CDS-L-elsbetiae_contig16051:846..9311691683022.7893882-CDS-L-elsbetiae_contig16051:846..931Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16051 847..931 -
1622815663.0257754-CDS-L-elsbetiae_contig16051:2388..24711622815663.0257754-CDS-L-elsbetiae_contig16051:2388..2471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16051 2389..2471 -
1691683022.8031037-CDS-L-elsbetiae_contig16051:2388..24711691683022.8031037-CDS-L-elsbetiae_contig16051:2388..2471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16051 2389..2471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16051.4171.1prot_L-elsbetiae_contig16051.4171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16051 847..2471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16051.4171.1

>prot_L-elsbetiae_contig16051.4171.1 ID=prot_L-elsbetiae_contig16051.4171.1|Name=mRNA_L-elsbetiae_contig16051.4171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
SFHGPGTAAYVAHDLEGAPARLLYPTTSAEAKRASFPRGDATGNKTTRAA
SPPRWA
back to top

mRNA from alignment at L-elsbetiae_contig16051:845..2471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16051.4171.1 ID=mRNA_L-elsbetiae_contig16051.4171.1|Name=mRNA_L-elsbetiae_contig16051.4171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1627bp|location=Sequence derived from alignment at L-elsbetiae_contig16051:845..2471- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTTCATGGACCTGGCACAGCTGCCTACGTTGCACACGACTTGGAAGG
CGCCCCCGCCAGGCTGTTGTATCCTACCACGAGGTGAAACAAACGGCAAA
CTAGATTTTAACGACGAAATCAGGAGTTTTGTTCAATCGATTGGCCATTT
TTATGCACCCACTTCAGACTACGTTACCTTCGTTGTACTAGGAGTTGCGT
ATCTCGGGGGTGCCCTGCTACGGGGTGAGAAGTGACGTGGATTGGTTAGG
CGAGGTTACGTGTCTCTTGCTGAAGGTTCGCGGGGATGTAAGGCGGAAGC
GGGGTGTATCTGCTAGCTTCTAGTAAAACCGCGATGCAACATGGAGGACA
ATTGAGACATGCAGGGCACATGAGGCAGTCCTGTGCGGTAGGTATAACGT
CGCCACGAGCCCTCTCGTGTCCTCGTCTTTTCCCCTAGGAAGTGGTGCTG
ACGGTTGGCTTTGGGGGCAGAGCTGTAGGTAGGATATTCTTCCACTTTCC
CGTTCCAGTGTAGTCGGGGTCGTCATGGACGGAACTCCCCGCGTCGCCCT
CCATTTGGTGCTAGTAACGATTTGTCGCGGACTGATAAGCTTATCAAGGA
AGTATCTTTTTTTTAGGCGTTCGAAACCCGGGATAATTGGGGGGAGAAAG
CACAGGAGAGGACCTGAACCGACACCTGGCGGTGTTTTTCTGTCATCTCC
CTCGTAGATCTCTCTCCAGCTGTCCTTTCGCACCAAAAGATCGACGGTCG
TGCTTTCAAACGAGAATAGTTTCCAAAAAGACCGAGCCAGTACGTGGGTT
GGCTGCCTTCAGGTAGCTGGAGCTGTTGCAAACAGAGCAGCGAGCAATAT
GCGAGGGGCGCCAAAGGCAGAGCTCAAGTGTGCACCGAGAAAACAGCGTT
TTCGTGTGTCGGCAAAAGTCAGCTCACACACGCATGCATGGGTAGACAGC
AGCGAGGGGTCGGCCATGGAGGGCTCGGGGTCTTTGGAGACGGGGTCTTC
GGCTTAGCTTTTCCTATCAGAGCCTTGAAGGAACATAGTTGAAGCACAGG
AACATCTGTGCACACGGTGATGTTCGATGTAGCGACCTAGGTGTGTTCAA
AACTGTCTTAAAAAAATGCCCTATTCTCTCTCAATCTGGTCGGGTTTTGC
TTCACGAAACACACCGTACACGCCGTGTACACCAGCGAAAACAGCAGACA
AGCGAAGATATCCAAGAACATTTCCTTCAAGATAAAGGTGTATGTATGTA
GTCAAGACAGCCGAACCGGCTGCCCCCCCGTCAGATATTACGATGCCGAG
CATATATCCTTATTGTACTGATTTCAAAGAAAATATAATTAAACCCAGTA
TCCTTCCTCACTACTTTAAGTGCGTGGGACAACCTAAAACGTACCCCCGT
TGTCTGCGGCTCGACATGCTCGTTTTAACCCTTCCCTCCCCCGTCCGTCC
GTGCCTGACTGCTTTTTTATTTGCCCCCCTATTTGTCCCTTCCTCTGTAC
CTGCTTCGCTGCCTGCTCCTCTGATCACGTGCGTCGCTAGCGCAGAGGCC
AAACGCGCCTCCTTCCCGAGGGGCGACGCGACTGGGAATAAAACAACAAG
GGCCGCCTCGCCACCGAGATGGGCCAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16051:845..2471-

>mRNA_L-elsbetiae_contig16051.4171.1 ID=mRNA_L-elsbetiae_contig16051.4171.1|Name=mRNA_L-elsbetiae_contig16051.4171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig16051:845..2471- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTTCATGGACCTGGCACAGCTGCCTACGTTGCACACGACTTGGAAGG
CGCCCCCGCCAGGCTGTTGTATCCTACCACGAGTCCTTTCATGGACCTGG
CACAGCTGCCTACGTTGCACACGACTTGGAAGGCGCCCCCGCCAGGCTGT
TGTATCCTACCACGAGCGCAGAGGCCAAACGCGCCTCCTTCCCGAGGGGC
GACGCGACTGGGAATAAAACAACAAGGGCCGCCTCGCCACCGAGATGGGC
CCGCAGAGGCCAAACGCGCCTCCTTCCCGAGGGGCGACGCGACTGGGAAT
AAAACAACAAGGGCCGCCTCGCCACCGAGATGGGCC
back to top