mRNA_L-elsbetiae_contig1605.4169.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1605.4169.1
Unique NamemRNA_L-elsbetiae_contig1605.4169.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1605.4169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1605contigL-elsbetiae_contig1605:24132..24679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003670.1
Exons1
Model size548
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1605.4169.1prot_L-elsbetiae_contig1605.4169.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1605 24279..24473 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.8743396-UTR-L-elsbetiae_contig1605:24131..242781622815662.8743396-UTR-L-elsbetiae_contig1605:24131..24278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1605 24132..24278 +
1691683022.7262242-UTR-L-elsbetiae_contig1605:24131..242781691683022.7262242-UTR-L-elsbetiae_contig1605:24131..24278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1605 24132..24278 +
1622815662.9029703-UTR-L-elsbetiae_contig1605:24473..246791622815662.9029703-UTR-L-elsbetiae_contig1605:24473..24679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1605 24474..24679 +
1691683022.7477858-UTR-L-elsbetiae_contig1605:24473..246791691683022.7477858-UTR-L-elsbetiae_contig1605:24473..24679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1605 24474..24679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.8902378-CDS-L-elsbetiae_contig1605:24278..244731622815662.8902378-CDS-L-elsbetiae_contig1605:24278..24473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1605 24279..24473 +
1691683022.7366433-CDS-L-elsbetiae_contig1605:24278..244731691683022.7366433-CDS-L-elsbetiae_contig1605:24278..24473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1605 24279..24473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1605.4169.1

>prot_L-elsbetiae_contig1605.4169.1 ID=prot_L-elsbetiae_contig1605.4169.1|Name=mRNA_L-elsbetiae_contig1605.4169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MASISWDSDVEVEEGIKTSAVRWKGRTLVNFAVGRLRVRALPVVIHFLPE
DVQWFSSVSHISRD*
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mRNA from alignment at L-elsbetiae_contig1605:24132..24679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1605.4169.1 ID=mRNA_L-elsbetiae_contig1605.4169.1|Name=mRNA_L-elsbetiae_contig1605.4169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=548bp|location=Sequence derived from alignment at L-elsbetiae_contig1605:24132..24679+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCTCCGAACTAAAAGCCCAGGTCACACCAGCAGCACCGCTGTACGCG
CGGGGGCTCCCAGTCCTCCTTTTCTTCCCTCGCAATCGGTTGCCCCCAAC
ATCCTAACATACTATCACCGCGCCGTCGCCTGCGAAGACAAGACGACATG
GCCTCCATATCGTGGGACAGCGATGTGGAGGTGGAGGAGGGGATAAAGAC
TAGCGCCGTGCGATGGAAAGGGAGGACACTCGTCAATTTCGCAGTCGGTC
GGTTGAGGGTGCGCGCCCTCCCTGTCGTGATTCACTTTCTCCCGGAGGAT
GTCCAGTGGTTCTCGTCGGTGAGCCATATCAGTCGAGACTAAAACCTGTC
TGCCCTAAAACCTGTCTGTAGCTGCCTCTTCGTCTGTTCCCGTCGGAGCA
CTGCTCGGTGCTGTAGACGAATGGAATGCCCTACGATATGTACAAAGAGC
GATAGTTCCCCCCCTTGTTCGTTCGTTGAATCTTAACCTTCGCCTTCGAG
GACCCGCTACAGGATGCTTTTGGAACCACACACGTGTTGCACCTCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1605:24132..24679+

>mRNA_L-elsbetiae_contig1605.4169.1 ID=mRNA_L-elsbetiae_contig1605.4169.1|Name=mRNA_L-elsbetiae_contig1605.4169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig1605:24132..24679+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCCATATCGTGGGACAGCGATGTGGAGGTGGAGGAGGGGATAAA
GACTAGCGCCGTGCGATGGAAAGGGAGGACACTCGTCAATTTCGCAGTCG
GTCGGTTGAGGGTGCGCGCCCTCCCTGTCGTGATTCACTTTCTCCCGGAG
GATGTCCAGTGGTTCTCGTCGGTGAGCCATATCAGTCGAGACTAAATGGC
CTCCATATCGTGGGACAGCGATGTGGAGGTGGAGGAGGGGATAAAGACTA
GCGCCGTGCGATGGAAAGGGAGGACACTCGTCAATTTCGCAGTCGGTCGG
TTGAGGGTGCGCGCCCTCCCTGTCGTGATTCACTTTCTCCCGGAGGATGT
CCAGTGGTTCTCGTCGGTGAGCCATATCAGTCGAGACTAA
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