mRNA_L-elsbetiae_contig16038.4162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16038.4162.1
Unique NamemRNA_L-elsbetiae_contig16038.4162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16038.4162.1 vs. uniprot
Match: A0A6H5L7G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.350e-13
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  132 TEGRDVRQRRPRTALLRGTRGEQFLRTA-EP-FVQSRRQQTRRADVAVTADLRLLVRGSIDALQATLGEQDWQAVVETVEPVALPEVHRVVS 401
            TE R+   +R + +L +   GE    +A EP  +QSR  +  +ADVAVT DL+ LVR S+DAL+ATLG+Q WQ  VETVEPV L E+ R+V+
Sbjct:   52 TEEREDGGKRLKESLAQPPVGEPDSASASEPNLLQSRLLEALQADVAVTTDLKGLVRASMDALRATLGDQGWQVAVETVEPVVLRELQRMVA 143
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BLAST of mRNA_L-elsbetiae_contig16038.4162.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.990e-11
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:  132 TEGRDVRQRRPRTALLRGTRGEQFLRTA-EP-FVQSRRQQTRRADVAVTADLRLLVRGSIDALQATLGEQDWQAVVETVEPVALPEVHRVVS 401
            TE R+   +R + +L +   GE    +A EP  + SR  +  +ADVAVT DL+ LVR S+DAL+ATLG+Q WQ  VETVEPV L E+ R+V+
Sbjct: 1049 TEEREDGGKRLKESLAQPPVGEPDSASASEPNLLHSRLLEALQADVAVTTDLKGLVRASMDALRATLGDQGWQVAVETVEPVVLRELQRMVA 1140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16038.4162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7G0_9PHAE8.350e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G019_ECTSI7.990e-1148.91Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16038contigL-elsbetiae_contig16038:557..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size406
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16038.4162.1prot_L-elsbetiae_contig16038.4162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16038 681..1974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2717803-UTR-L-elsbetiae_contig16038:556..6801622815662.2717803-UTR-L-elsbetiae_contig16038:556..680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16038 557..680 -
1691683022.3193564-UTR-L-elsbetiae_contig16038:556..6801691683022.3193564-UTR-L-elsbetiae_contig16038:556..680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16038 557..680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.2817395-CDS-L-elsbetiae_contig16038:680..7811622815662.2817395-CDS-L-elsbetiae_contig16038:680..781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 681..781 -
1691683022.3299553-CDS-L-elsbetiae_contig16038:680..7811691683022.3299553-CDS-L-elsbetiae_contig16038:680..781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 681..781 -
1622815662.2913253-CDS-L-elsbetiae_contig16038:1295..13881622815662.2913253-CDS-L-elsbetiae_contig16038:1295..1388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 1296..1388 -
1691683022.341274-CDS-L-elsbetiae_contig16038:1295..13881691683022.341274-CDS-L-elsbetiae_contig16038:1295..1388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 1296..1388 -
1622815662.3041122-CDS-L-elsbetiae_contig16038:1886..19741622815662.3041122-CDS-L-elsbetiae_contig16038:1886..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 1887..1974 -
1691683022.3507426-CDS-L-elsbetiae_contig16038:1886..19741691683022.3507426-CDS-L-elsbetiae_contig16038:1886..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16038 1887..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16038.4162.1

>prot_L-elsbetiae_contig16038.4162.1 ID=prot_L-elsbetiae_contig16038.4162.1|Name=mRNA_L-elsbetiae_contig16038.4162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
WGADAKFVGDGAVDTLALCKQQGRQECRPDSEHLCVQGNGGEGRRRDVTC
VNEGLELLSSEEPEENSSSVPPNLLCSLGGSRREEPTSPSQRT*
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mRNA from alignment at L-elsbetiae_contig16038:557..1974-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16038.4162.1 ID=mRNA_L-elsbetiae_contig16038.4162.1|Name=mRNA_L-elsbetiae_contig16038.4162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1418bp|location=Sequence derived from alignment at L-elsbetiae_contig16038:557..1974- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTGCGGATGCAAAGTTTGTGGGCGATGGCGCTGTTGACACTCTTGC
CTTATGCAAGCAGCAGGGTCGCCAAGAATGTCGACCAGGTACGGTGTGAT
ATGCGGCTCTTCTGTTTGTTACCGTTTCTCTGTTTGTGTTTGTGGTTCTT
AAAAGTGGCATGTTTGGAGGGCTGGGGCTATTTACCACAGGCTGTAACAG
CCTACACTGTCATGTACATCAACACTACAGCTTGTGTATGTCTTGGCTGC
AACTTGGTCTGACTAAGTTTGTTTGTAATTCATCAAATGCTACGACAGCC
TACCATGCATCACAGGTTGGGTACCCGTTTGAAATTGTGGGCCAGGGTCG
TACTAGAGCACCCTGACATTTTCTTGCGTTTGTGCTTTTGGCATATCTGT
TTGTATTGTAGCAGACACATGAAGCAGGCCAAGAGTTTCCTGCAAGCGTA
ATGCGAAAGGGGAACAGTATTTAAAAGAGACTGTCATATCGTGCCCATGC
GGATGTCCATTCGGGTGGATATGCTAGCCTCAACCTTGACCCCCTCGAAC
TCTTGGCACTGTTACTACTGCCGCTGCTCATTGCAGATAGTGAACATCTG
TGTGTGCAGGGTAACGGAGGAGAAGGAAGACGGAGGGACGTGACGTGCGT
CAACGAAGGCCTCGAACTGCTCTCCTCAGGTGCGTTAGATGCTCAAATCC
CCCAGCAGCTCAGGTTGCTTGGCTCGCACGTGTCGAGGACGTATTCAACT
ATCGATACACGCGTGGTTGGTTGCAAACACGTCGAACAAAGTGTAACATT
TCGGCGGTCACGCTCCGCGATCTCTATACCACCCCCGTGGGAACCATGCG
ATCCACAATAACTTTAGGCATGTAAAGGGTATTGCATTGGAAAGCTGAAC
TGCTGGTGTTTGAATGGTAGCATTTTCTTGTTCTGAAACGAGGTAAGCAT
GTTTTTTGGTGCCTTCCACCGGGCTACATTCAAAAGGCGGTAGGGGTGCG
GCTCGTAGTTGTTTGGGTGTTCGAGCGCTGACAGCTGGGACACCACGATC
AACTACCAAAATCACCGTCGTCTATGCCCCCACCAGGCCCCCTTCCACGC
CTGCCTCTCCCCTTGTGATCCGTCATTGCTGTGGCCTCTATCTCTGGTTC
GTCTTCTCGCCGATTCAACACCCCGCCGACACGTGCTCCGCAGAGGAACC
AGAGGAGAACAGTTCCTCCGTACCGCCGAACCTTTTGTGCAGTCTAGGCG
GCAGCAGACGCGAAGAGCCGACGTCGCCGTCACAGCGGACCTGAGACTGC
TGGTTAGAGGAAGCATAGATGCTTTGCAGGCCACCCTCGGAGAGCAGGAC
TGGCAGGCGGTGGTGGAGACTGTCGAACCAGTTGCCCTGCCAGAGGTTCA
TCGGGTGGTGTCGTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16038:557..1974-

>mRNA_L-elsbetiae_contig16038.4162.1 ID=mRNA_L-elsbetiae_contig16038.4162.1|Name=mRNA_L-elsbetiae_contig16038.4162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig16038:557..1974- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTGCGGATGCAAAGTTTGTGGGCGATGGCGCTGTTGACACTCTTGC
CTTATGCAAGCAGCAGGGTCGCCAAGAATGTCGACCAGTGGGGTGCGGAT
GCAAAGTTTGTGGGCGATGGCGCTGTTGACACTCTTGCCTTATGCAAGCA
GCAGGGTCGCCAAGAATGTCGACCAGATAGTGAACATCTGTGTGTGCAGG
GTAACGGAGGAGAAGGAAGACGGAGGGACGTGACGTGCGTCAACGAAGGC
CTCGAACTGCTCTCCTCAGATAGTGAACATCTGTGTGTGCAGGGTAACGG
AGGAGAAGGAAGACGGAGGGACGTGACGTGCGTCAACGAAGGCCTCGAAC
TGCTCTCCTCAGAGGAACCAGAGGAGAACAGTTCCTCCGTACCGCCGAAC
CTTTTGTGCAGTCTAGGCGGCAGCAGACGCGAAGAGCCGACGTCGCCGTC
ACAGCGGACCTGAAGGAACCAGAGGAGAACAGTTCCTCCGTACCGCCGAA
CCTTTTGTGCAGTCTAGGCGGCAGCAGACGCGAAGAGCCGACGTCGCCGT
CACAGCGGACCTGA
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