mRNA_L-elsbetiae_contig16022.4157.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16022.4157.1
Unique NamemRNA_L-elsbetiae_contig16022.4157.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 8.300e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   85 RCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            RC+GKEESANFQPLLAN VDDLLATVLLPEWPA+ELLLHAL
Sbjct:  829 RCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHAL 869
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A0C9RR97_9HYME (Nipped-B protein (Fragment) n=3 Tax=Opiinae TaxID=68883 RepID=A0A0C9RR97_9HYME)

HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   82 QRCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            Q+CS K    +++PL  N V DLLATV  PEWPA+ELLL  L
Sbjct:  633 QKCSSKGTDVDYRPLFENFVQDLLATVNKPEWPAAELLLSLL 674
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A6V7JYK2_9HYME (Nipped-B protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7JYK2_9HYME)

HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   82 QRCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            Q+CS K    +++PL  N V DLLATV  PEWPA+ELLL  L
Sbjct:  855 QKCSSKGTEVDYRPLFENFVQDLLATVNKPEWPAAELLLSLL 896
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A6H5IUK8_9HYME (Nipped-B protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5IUK8_9HYME)

HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   82 QRCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            ++CS K E  +++PL  N V DLLATV  PEWPA+EL+L  L
Sbjct:  782 KKCSNKGEEVDYRPLFENFVQDLLATVNKPEWPAAELMLSLL 823
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.190e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   82 QRCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            QRC  KEE  +++ +  N VDDLLA +L PEWPA EL+L A+
Sbjct:  482 QRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAM 523
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.200e-5
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   82 QRCSGKEE---SANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            QRCS K E   ++ F+P+L+N+VDDLLA  LLPE+PA+E+LL +L
Sbjct:  368 QRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSL 412
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL)

HSP 1 Score: 49.3 bits (116), Expect = 4.350e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   85 RCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            +C  K E  +++PL  N V DLLATV  PEWPA+ELLL  L
Sbjct:  783 KCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLL 823
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL)

HSP 1 Score: 49.3 bits (116), Expect = 4.380e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   85 RCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            +C  K E  +++PL  N V DLLATV  PEWPA+ELLL  L
Sbjct:  783 KCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLL 823
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A6A4UTR9_AMPAM (Nipped-B protein n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4UTR9_AMPAM)

HSP 1 Score: 48.9 bits (115), Expect = 5.990e-5
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   82 QRCSGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            Q+C  K E  +++PL  N + DLLATV  PEWPA+E LL  L
Sbjct:  738 QKCGSKNEEIDYRPLFENFIQDLLATVNKPEWPAAECLLSLL 779
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BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Match: A0A6B2KW35_9EUKA (Sister chromatid cohesion protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW35_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 8.170e-5
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   91 SGKEESANFQPLLANVVDDLLATVLLPEWPASELLLHAL 207
            S KE+ A ++ +L+N+V+DLL T+ LPEWP+SELLL  L
Sbjct:  309 SNKEKEAEYRTILSNLVEDLLTTLNLPEWPSSELLLSVL 347
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16022.4157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV8_ECTSI8.300e-1692.68Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A0C9RR97_9HYME2.340e-557.14Nipped-B protein (Fragment) n=3 Tax=Opiinae TaxID=... [more]
A0A6V7JYK2_9HYME2.340e-557.14Nipped-B protein (Fragment) n=1 Tax=Bracon brevico... [more]
A0A6H5IUK8_9HYME2.340e-554.76Nipped-B protein n=2 Tax=Trichogramma TaxID=7490 R... [more]
A0A485K4A2_9STRA3.190e-554.76Sister chromatid cohesion protein n=1 Tax=Aphanomy... [more]
A0A7S4RR27_9STRA3.200e-557.78Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A7F5R8R5_AGRPL4.350e-556.10nipped-B-like protein A n=1 Tax=Agrilus planipenni... [more]
A0A7F5R8P1_AGRPL4.380e-556.10Nipped-B protein n=1 Tax=Agrilus planipennis TaxID... [more]
A0A6A4UTR9_AMPAM5.990e-552.38Nipped-B protein n=2 Tax=Amphibalanus amphitrite T... [more]
A0A6B2KW35_9EUKA8.170e-556.41Sister chromatid cohesion protein n=1 Tax=Arcella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16022contigL-elsbetiae_contig16022:1763..1969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D7FSV8
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.9417856-CDS-L-elsbetiae_contig16022:1762..19691622815661.9417856-CDS-L-elsbetiae_contig16022:1762..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16022 1763..1969 -
1691683022.130305-CDS-L-elsbetiae_contig16022:1762..19691691683022.130305-CDS-L-elsbetiae_contig16022:1762..1969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16022 1763..1969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16022.4157.1prot_L-elsbetiae_contig16022.4157.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16022 1763..1969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16022.4157.1

>prot_L-elsbetiae_contig16022.4157.1 ID=prot_L-elsbetiae_contig16022.4157.1|Name=mRNA_L-elsbetiae_contig16022.4157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MVVVVVTAMVMVMVVAMVVAMVVAMDRQRCSGKEESANFQPLLANVVDDL
LATVLLPEWPASELLLHAL
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mRNA from alignment at L-elsbetiae_contig16022:1763..1969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16022.4157.1 ID=mRNA_L-elsbetiae_contig16022.4157.1|Name=mRNA_L-elsbetiae_contig16022.4157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig16022:1763..1969- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTGGTGGTGGTGACGGCGATGGTGATGGTGATGGTGGTGGCGAT
GGTGGTGGCGATGGTGGTGGCGATGGACCGACAAAGGTGCTCCGGGAAGG
AGGAGAGCGCCAACTTCCAGCCGCTGCTGGCCAACGTGGTGGACGACCTG
CTGGCGACCGTCCTGCTGCCGGAGTGGCCGGCGTCGGAGTTGCTCCTCCA
CGCCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16022:1763..1969-

>mRNA_L-elsbetiae_contig16022.4157.1 ID=mRNA_L-elsbetiae_contig16022.4157.1|Name=mRNA_L-elsbetiae_contig16022.4157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig16022:1763..1969- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGTGGTGGTGGTGACGGCGATGGTGATGGTGATGGTGGTGGCGAT
GGTGGTGGCGATGGTGGTGGCGATGGACCGACAAAGGTGCTCCGGGAAGG
AGGAGAGCGCCAACTTCCAGCCGCTGCTGGCCAACGTGGTGGACGACCTG
CTGGCGACCGTCCTGCTGCCGGAGTGGCCGGCGTCGGAGTTGCTCCTCCA
CGCCCTGATGGTGGTGGTGGTGGTGACGGCGATGGTGATGGTGATGGTGG
TGGCGATGGTGGTGGCGATGGTGGTGGCGATGGACCGACAAAGGTGCTCC
GGGAAGGAGGAGAGCGCCAACTTCCAGCCGCTGCTGGCCAACGTGGTGGA
CGACCTGCTGGCGACCGTCCTGCTGCCGGAGTGGCCGGCGTCGGAGTTGC
TCCTCCACGCCCTG
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