mRNA_L-elsbetiae_contig16.4139.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16.4139.1
Unique NamemRNA_L-elsbetiae_contig16.4139.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16.4139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16contigL-elsbetiae_contig16:77690..78071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.7747412-UTR-L-elsbetiae_contig16:77689..777591622815658.7747412-UTR-L-elsbetiae_contig16:77689..77759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16 77690..77759 +
1691683019.8859358-UTR-L-elsbetiae_contig16:77689..777591691683019.8859358-UTR-L-elsbetiae_contig16:77689..77759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16 77690..77759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.7846406-CDS-L-elsbetiae_contig16:77759..780711622815658.7846406-CDS-L-elsbetiae_contig16:77759..78071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 77760..78071 +
1691683019.894996-CDS-L-elsbetiae_contig16:77759..780711691683019.894996-CDS-L-elsbetiae_contig16:77759..78071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16 77760..78071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16.4139.1prot_L-elsbetiae_contig16.4139.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16 77760..78071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16.4139.1

>prot_L-elsbetiae_contig16.4139.1 ID=prot_L-elsbetiae_contig16.4139.1|Name=mRNA_L-elsbetiae_contig16.4139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MGSYMRRSAARSSYPEGKSAIPRPGGRDLCCMCLCVFGPLHHFSSELLSF
VSTASTMKDTYTFCFSDIADPIYFYMIWPNSVFSALQPLIRQTQPPPPPR
RLP*
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mRNA from alignment at L-elsbetiae_contig16:77690..78071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16.4139.1 ID=mRNA_L-elsbetiae_contig16.4139.1|Name=mRNA_L-elsbetiae_contig16.4139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=382bp|location=Sequence derived from alignment at L-elsbetiae_contig16:77690..78071+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAATCTTGACCAAAAGATCAAGATTTTTGTGAAAAATTATGCTTCCGT
ATTGACCTCACAAAAAAAAAATGGGTTCGTATATGCGGCGCTCAGCAGCC
CGGAGCTCGTATCCTGAAGGCAAGAGCGCGATTCCGCGACCAGGAGGGCG
CGATTTGTGTTGTATGTGTTTGTGCGTTTTCGGCCCGTTGCACCATTTCT
CCTCTGAACTCCTCTCCTTCGTATCTACGGCTTCTACGATGAAAGACACA
TACACATTTTGTTTTTCTGACATTGCTGACCCCATATACTTCTATATGAT
TTGGCCTAACTCCGTTTTCAGTGCTCTCCAACCCCTCATTCGCCAAACAC
AACCCCCCCCCCCCCCCCGTCGCCTGCCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16:77690..78071+

>mRNA_L-elsbetiae_contig16.4139.1 ID=mRNA_L-elsbetiae_contig16.4139.1|Name=mRNA_L-elsbetiae_contig16.4139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig16:77690..78071+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTCGTATATGCGGCGCTCAGCAGCCCGGAGCTCGTATCCTGAAGG
CAAGAGCGCGATTCCGCGACCAGGAGGGCGCGATTTGTGTTGTATGTGTT
TGTGCGTTTTCGGCCCGTTGCACCATTTCTCCTCTGAACTCCTCTCCTTC
GTATCTACGGCTTCTACGATGAAAGACACATACACATTTTGTTTTTCTGA
CATTGCTGACCCCATATACTTCTATATGATTTGGCCTAACTCCGTTTTCA
GTGCTCTCCAACCCCTCATTCGCCAAACACAACCCCCCCCCCCCCCCCGT
CGCCTGCCATGAATGGGTTCGTATATGCGGCGCTCAGCAGCCCGGAGCTC
GTATCCTGAAGGCAAGAGCGCGATTCCGCGACCAGGAGGGCGCGATTTGT
GTTGTATGTGTTTGTGCGTTTTCGGCCCGTTGCACCATTTCTCCTCTGAA
CTCCTCTCCTTCGTATCTACGGCTTCTACGATGAAAGACACATACACATT
TTGTTTTTCTGACATTGCTGACCCCATATACTTCTATATGATTTGGCCTA
ACTCCGTTTTCAGTGCTCTCCAACCCCTCATTCGCCAAACACAACCCCCC
CCCCCCCCCCGTCGCCTGCCATGA
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