mRNA_L-elsbetiae_contig15993.4128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15993.4128.1
Unique NamemRNA_L-elsbetiae_contig15993.4128.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15993.4128.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.750e-44
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:   70 MVDEVDKLSRIYSVLTDGEVEAWVSSEEEPKLPSEAVTAAFREAEGLFAEEQDGGAGGDSLEINYRDIAIPRLSEVLSELVWRIVGGTVSVDLAIDYLASDKPFQNRL 393
            M +EV KL  IYSVLT+ EVEAWVSS + PKLPSE++T AFR+AE LFAEEQDGG GGDSLEINYRDIAIPRLSE+LSELVWR+VGG +SVDLAI YLASDKPF +RL
Sbjct:    1 MAEEVAKLGGIYSVLTEEEVEAWVSSGD-PKLPSESITGAFRQAERLFAEEQDGGEGGDSLEINYRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFASRL 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15993.4128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.750e-4478.70THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15993contigL-elsbetiae_contig15993:913..2642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15993.4128.1prot_L-elsbetiae_contig15993.4128.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15993 913..2642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.4988048-CDS-L-elsbetiae_contig15993:912..9321622815658.4988048-CDS-L-elsbetiae_contig15993:912..932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 913..932 +
1691683019.7394934-CDS-L-elsbetiae_contig15993:912..9321691683019.7394934-CDS-L-elsbetiae_contig15993:912..932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 913..932 +
1622815658.5086732-CDS-L-elsbetiae_contig15993:1321..15701622815658.5086732-CDS-L-elsbetiae_contig15993:1321..1570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 1322..1570 +
1691683019.7545757-CDS-L-elsbetiae_contig15993:1321..15701691683019.7545757-CDS-L-elsbetiae_contig15993:1321..1570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 1322..1570 +
1622815658.5181873-CDS-L-elsbetiae_contig15993:2509..26421622815658.5181873-CDS-L-elsbetiae_contig15993:2509..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 2510..2642 +
1691683019.7651076-CDS-L-elsbetiae_contig15993:2509..26421691683019.7651076-CDS-L-elsbetiae_contig15993:2509..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15993 2510..2642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15993.4128.1

>prot_L-elsbetiae_contig15993.4128.1 ID=prot_L-elsbetiae_contig15993.4128.1|Name=mRNA_L-elsbetiae_contig15993.4128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RGTHYSRVQRGSIDRLGASNSSTMVDEVDKLSRIYSVLTDGEVEAWVSSE
EEPKLPSEAVTAAFREAEGLFAEEQDGGAGGDSLEINYRDIAIPRLSEVL
SELVWRIVGGTVSVDLAIDYLASDKPFQNRLGPR
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mRNA from alignment at L-elsbetiae_contig15993:913..2642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15993.4128.1 ID=mRNA_L-elsbetiae_contig15993.4128.1|Name=mRNA_L-elsbetiae_contig15993.4128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1730bp|location=Sequence derived from alignment at L-elsbetiae_contig15993:913..2642+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGGGACGCACTACTCACGGTAAGCTTGACTTCTGCTAGGTTAAGGATG
CAAAGTAGCCGCGGTGATTCCATTGCAAGGAAAAACGTATCCGGATCCTC
GCGGGTATCTGCCTGTTGCCACACGCAGCGCGCAGGCAGCAACAGCCCAC
CGTGTGCAACTCAACTAGCCCTCTGCCCCCCAGGTGTTTATTGCCAGCAG
GCAGCACGAGGAGAGGATCAGCCGAAGAGGGAAAGCAAGCCAACGTCGCT
CAAATGAATGATACATTCGTGCCCTCGTAGCTGAATGGGAAGCACTGCAA
CTCTCTGTACATATTTTGCGACACTCAGCAGGCGAACCAATCAAGGAGGG
CGAGAGCGAGCACGCCGGCGTTTGAGACACGCCCCTTGGCCCCTTTCCCG
CGTGTGCAGTGTGCAGCGTGGCTCGATCGACCGACTTGGGGCCAGCAACA
GCAGCACCATGGTGGACGAAGTGGACAAGCTTAGCAGGATCTACTCGGTT
TTGACGGACGGGGAGGTGGAGGCGTGGGTGTCGTCCGAGGAGGAGCCGAA
GCTTCCGAGCGAGGCAGTCACGGCCGCGTTTCGCGAGGCGGAGGGGTTGT
TCGCCGAGGAGCAAGACGGCGGGGCCGGCGGCGACAGCCTGGAGATCAAC
TACAGAGAGTGAGCTTGCAAGAAGAATACAAGACTCTTATCGTTTTGAAA
GTTTTGGTACCTAGTATTTACCGTAGGTGACATAAGATACCACCCCCCCT
GGGCCGAATTTTAGAGCTCCATTACTCCGTAACGAAGAAGGTGTCAGCAC
CAAACGACACATTTTCCGACAGCCCTCGCCTAGATCTTTCCAACGCCACC
CCTTTCGAAACTGTCATTCTTCTTGCTGGGGAGGAATCGAGCTTTGAAAA
TATGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATATGGATACTA
TATCCTAGATCTACGAAAAGGTCAAGGCAGCAAATGGATGTTGGTTGTTT
GCTTGCACCGCCGTTTGGCACACCTGTGTGCGCTGGTGCATACACGCGGC
GTAAGCCAGCACAGCAGTAGACTCGGCTAGAACCTGCCAAGGATTGATTG
TTCACGCCATATGATAAGAAGCGCCATGTGCCAGCAGAACTTTGCTGCAC
GTTTGAGCATAGTGCAGCAGTAGACACATCCTCAGCAGGGTTCTGCGGTA
CATACCGTAGGTGACACAAGATACCACACCCCCTGGACCGACTTTTAGAG
CTTCATTACTCCGTAACGAAGAGGGTGCCAGCGCAAAACGACACTTTTTC
AGACAGCCCTTGCCGAAATCTTTGCAACACCATCCCTTCTCGGCATTACG
CTCTTCTTGCTGGGGAGGAATCGAGCTTTGAACATATGTGTGTGTGTGTG
TGCGCGCGCGGTGATATCAGATCGGCAAGACGAGCTCGCGCAACCTTGAC
CGAGCTACACACAACAGCTGCTAAAATTCCGCATTACCGTTGTCTGTCCG
GGTCATAACATGTCATGTCATGCCATGTCATGTTATGTCATGTCACGCTC
TCTGGTTGACCTCCCCCTCCGCGCCCCCTCCCCTTCCATGTGCCCAGCAT
CGCCATCCCGCGGCTATCGGAAGTGCTTTCCGAGCTGGTTTGGCGCATCG
TTGGAGGAACCGTGAGCGTGGATCTGGCCATCGACTACCTCGCTTCTGAC
AAGCCGTTCCAAAACCGCCTCGGACCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15993:913..2642+

>mRNA_L-elsbetiae_contig15993.4128.1 ID=mRNA_L-elsbetiae_contig15993.4128.1|Name=mRNA_L-elsbetiae_contig15993.4128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig15993:913..2642+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGGGACGCACTACTCACGCGCGGGACGCACTACTCACGTGTGCAGCGT
GGCTCGATCGACCGACTTGGGGCCAGCAACAGCAGCACCATGGTGGACGA
AGTGGACAAGCTTAGCAGGATCTACTCGGTTTTGACGGACGGGGAGGTGG
AGGCGTGGGTGTCGTCCGAGGAGGAGCCGAAGCTTCCGAGCGAGGCAGTC
ACGGCCGCGTTTCGCGAGGCGGAGGGGTTGTTCGCCGAGGAGCAAGACGG
CGGGGCCGGCGGCGACAGCCTGGAGATCAACTACAGAGATGTGCAGCGTG
GCTCGATCGACCGACTTGGGGCCAGCAACAGCAGCACCATGGTGGACGAA
GTGGACAAGCTTAGCAGGATCTACTCGGTTTTGACGGACGGGGAGGTGGA
GGCGTGGGTGTCGTCCGAGGAGGAGCCGAAGCTTCCGAGCGAGGCAGTCA
CGGCCGCGTTTCGCGAGGCGGAGGGGTTGTTCGCCGAGGAGCAAGACGGC
GGGGCCGGCGGCGACAGCCTGGAGATCAACTACAGAGACATCGCCATCCC
GCGGCTATCGGAAGTGCTTTCCGAGCTGGTTTGGCGCATCGTTGGAGGAA
CCGTGAGCGTGGATCTGGCCATCGACTACCTCGCTTCTGACAAGCCGTTC
CAAAACCGCCTCGGACCTCGACATCGCCATCCCGCGGCTATCGGAAGTGC
TTTCCGAGCTGGTTTGGCGCATCGTTGGAGGAACCGTGAGCGTGGATCTG
GCCATCGACTACCTCGCTTCTGACAAGCCGTTCCAAAACCGCCTCGGACC
TCGA
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