mRNA_L-elsbetiae_contig1597.4116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1597.4116.1
Unique NamemRNA_L-elsbetiae_contig1597.4116.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1597.4116.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 5.100e-33
Identity = 78/149 (52.35%), Postives = 97/149 (65.10%), Query Frame = 3 
Query:   30 LLGSAARWRRSWIGAARSRANSRVARALSDSAGDLGDE---WEYDHDVLVVGGGIVGCTLACRLAQDFAAASSPRSSLSRAAGAGTAAAEVDDNASPRRRGRRRPSVGLIEARPPPTLEAALARGSADPRVYSLAPSSVDVLREVGVWD 467
            +LGS   WR S + A+R+    R  RA S +   LGD+   WEYDHDVLVVGGGIVGCTLACRLA+D ++ +     L   +   T   +              P+VGLIEARPPP+LEAALARG+ DPRVYSLAPSSV++L ++GVWD
Sbjct:    1 MLGSGMAWRHSRVAASRNMTRLRSHRAFSSAPAGLGDKAAGWEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTIGLPPLS---TGKDDGXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGAPDPRVYSLAPSSVEILGKLGVWD 146
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BLAST of mRNA_L-elsbetiae_contig1597.4116.1 vs. uniprot
Match: A0A6H5KHF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.210e-31
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 3 
Query:  144 WEYDHDVLVVGGGIVGCTLACRLAQDFAAASSPRSSLSRAAGAGTAAAEVDDNASPRRRGRRRPSVGLIEARPPPTLEAALARGSADPRVYSLAPSSVDVLREVGVWD 467
            WEYDHDVLVVGGGIVGCTLACRLA+D ++ +   S L   +   T                  P+VGLIEARPPP+LEAALARGS DPRVYSLAPSSV++L ++GVWD
Sbjct:    3 WEYDHDVLVVGGGIVGCTLACRLAKDLSSTTPSTSGLPPLS---TGKDXXXXXXXXXXXXXXXPAVGLIEARPPPSLEAALARGSPDPRVYSLAPSSVEILGKLGVWD 107
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BLAST of mRNA_L-elsbetiae_contig1597.4116.1 vs. uniprot
Match: W7U180_9STRA (Ubiquinone biosynthesis monooxygenase coq6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U180_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.040e-5
Identity = 42/130 (32.31%), Postives = 59/130 (45.38%), Query Frame = 3 
Query:   99 VARALSDSA--GDLGDEWEYDHDVLVVGGGIVGCTLACRLAQDFAAASSPRSSLSRAAGAGTAAAEVDDNASPRRRGRRRPSVGLIEARPPPTLEAALARGSADPRVYSLAPSSVDVLREVGVWDGVRSR 482
            + R  S +A  G   D W+YD  V+++GGGIVG +LAC LA++          + +  G   A  E+            RP        PPP           DPRVY+LAP+SV  L  +G W  ++ R
Sbjct:   19 IGRLFSSTAPHGTSTDSWDYD--VIILGGGIVGASLACSLAEN----------VGQRHGMKIALLEI------------RP--------PPPLAACLAPDRLPDPRVYALAPASVAFLESLGAWQLIKDR 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1597.4116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1J7_ECTSI5.100e-3352.35Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KHF3_9PHAE9.210e-3160.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U180_9STRA4.040e-532.31Ubiquinone biosynthesis monooxygenase coq6 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1597contigL-elsbetiae_contig1597:19909..21810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue2e-29
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size501
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1597.4116.1prot_L-elsbetiae_contig1597.4116.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1597 19935..21810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.4843254-UTR-L-elsbetiae_contig1597:19908..199341622815657.4843254-UTR-L-elsbetiae_contig1597:19908..19934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1597 19909..19934 +
1691683019.1040452-UTR-L-elsbetiae_contig1597:19908..199341691683019.1040452-UTR-L-elsbetiae_contig1597:19908..19934Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1597 19909..19934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.4985218-CDS-L-elsbetiae_contig1597:19934..200501622815657.4985218-CDS-L-elsbetiae_contig1597:19934..20050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1597 19935..20050 +
1691683019.1157668-CDS-L-elsbetiae_contig1597:19934..200501691683019.1157668-CDS-L-elsbetiae_contig1597:19934..20050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1597 19935..20050 +
1622815657.512197-CDS-L-elsbetiae_contig1597:21452..218101622815657.512197-CDS-L-elsbetiae_contig1597:21452..21810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1597 21453..21810 +
1691683019.1290426-CDS-L-elsbetiae_contig1597:21452..218101691683019.1290426-CDS-L-elsbetiae_contig1597:21452..21810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1597 21453..21810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1597.4116.1

>prot_L-elsbetiae_contig1597.4116.1 ID=prot_L-elsbetiae_contig1597.4116.1|Name=mRNA_L-elsbetiae_contig1597.4116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MLLGSAARWRRSWIGAARSRANSRVARALSDSAGDLGDEWEYDHDVLVVG
GGIVGCTLACRLAQDFAAASSPRSSLSRAAGAGTAAAEVDDNASPRRRGR
RRPSVGLIEARPPPTLEAALARGSADPRVYSLAPSSVDVLREVGVWDGVR
SRGAGEEE
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mRNA from alignment at L-elsbetiae_contig1597:19909..21810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1597.4116.1 ID=mRNA_L-elsbetiae_contig1597.4116.1|Name=mRNA_L-elsbetiae_contig1597.4116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig1597:19909..21810+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAGGCACAACGGCACAACTGGCGATGTTGCTGGGCTCGGCTGCGAGA
TGGAGGCGCTCCTGGATTGGGGCTGCACGAAGTCGAGCGAACTCCCGAGT
TGCTCGAGCACTTTCTGACTCGGCAGGAGATTTAGGCGACGAGTGAGAAC
ACTGCTGCTCCGGCTTGTTCAACTCTATCTACACAGCTAGTCTACATAAG
AGTAGTGTACGCTGTAGCTCTCCGCAATTATCTGCGGATTGTTCAGCGAG
CTACCGCGATTGATGGCATGCACCGGATCGTAGTTAGTAACATAGGATGG
AGCGAAAGGTCAGGCACACAAGCCCATCAACAGAGCAGTGCACACGTGCA
CACAGCAGCACAGACAGCAGCAGTAGTGCATTTAGGTAAGGGGTGCTACA
GCAGTGCAGCAGTTAGCGCAGCAAGATTGGCGATTCGCAGAAGCTGTTTC
CTCAACAACGGTAATAGTGCAGCAGTACACCCTCATGCTTGGCATGCACT
CTCGCTGGGGACACAACACACGGAGAGCTAACGGATGCGTTAGAAACCAC
CCCCCCCCAATAGCCTGGTCTGCCCTGGATACCGCTGAGTCTGTTGTATG
TATGAGGCATAGTATACATGTCTTGTTTCTTGTACAGCAAAAAGGGATCG
ATGTATCCCTTCTGGAGACAGCTGTGAAAGCTAGATTTCAGTCGTAATTT
ATGTACAAGTATCATGTGTAGCAGCTAATAAACGCTAATACCGTAGGTGA
CACAAGATACCACACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCC
AGCCAGAAAAGCGCCACTGCCGAAAGGGGTGGCGTTGGAAAGATCTAGTC
GAGGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTTGTTACG
GGGTAATGGAGCTCTAAAAATCCGTCCAGGGGGTGTGGTATCTCGTGTCA
CCTACGGTATGTGTGCTCACAAGAGGCCTTCCCGGAGGGGGTCGTTGCAA
CCAAAAATGGCCACAGGCGTCGAGTCTTACTAGACTTTACTGTAGTGCAA
TTTATATTTAGAGCTGTTGTTCACCTTTTGCTGCATGCAAAAGTAAACCT
CGACTACACCAAAGTAGACTACGGCTACCTGCGCGTGTGAACTCTTTTTC
GCGGCAGTGGCGAAAAGTGCATAGTCTAATGTATCAACCCAAATTGGCAA
ATTGGACGGTTGTCCCTTCAGGAGCTCCGCTTCCCCTTTGAAATGTTGGC
AACCACGGCCGACTTCTTTCCGGACATACACAATCGCGCAACACCATGTA
CCGACTCAAGCAGCACACGCTGTACATCCCGTTATCTTCCTTTTCCATTC
GCCGACTGCAGATAAGAATGCAGTGATAAGACCCCACCACTGCGCCTGTC
CGCCGACCTGGCTGTCCACCGACCTTTTGATCCATTGGTCCGTTTGAAGT
TTGAAGCAACTCGTCGGACACACAGACCTATGTCTAAATTGCTTTGGCTC
TATTTATGTAACGGTCCGCGCCTCTTTGCCCCCTTTCGTTTCAGGTGGGA
GTACGACCACGATGTCCTCGTTGTAGGCGGGGGGATCGTGGGCTGCACCT
TAGCCTGCCGCCTCGCCCAAGACTTCGCCGCAGCCTCCTCCCCCCGCTCC
TCCCTCTCAAGAGCCGCTGGCGCTGGCACTGCCGCCGCAGAGGTCGACGA
CAACGCAAGCCCGCGGCGGCGGGGGCGGCGACGCCCCTCGGTGGGCCTGA
TCGAGGCCCGCCCCCCGCCCACCCTGGAGGCGGCTCTGGCAAGGGGCTCT
GCTGACCCCCGTGTGTACTCGCTAGCTCCCTCGTCTGTGGACGTTCTCAG
GGAGGTCGGCGTGTGGGATGGGGTGCGGTCGCGGGGGGCAGGGGAAGAGG
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1597:19909..21810+

>mRNA_L-elsbetiae_contig1597.4116.1 ID=mRNA_L-elsbetiae_contig1597.4116.1|Name=mRNA_L-elsbetiae_contig1597.4116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1597:19909..21810+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTGGGCTCGGCTGCGAGATGGAGGCGCTCCTGGATTGGGGCTGC
ACGAAGTCGAGCGAACTCCCGAGTTGCTCGAGCACTTTCTGACTCGGCAG
GAGATTTAGGCGACGAATGTTGCTGGGCTCGGCTGCGAGATGGAGGCGCT
CCTGGATTGGGGCTGCACGAAGTCGAGCGAACTCCCGAGTTGCTCGAGCA
CTTTCTGACTCGGCAGGAGATTTAGGCGACGAGTGGGAGTACGACCACGA
TGTCCTCGTTGTAGGCGGGGGGATCGTGGGCTGCACCTTAGCCTGCCGCC
TCGCCCAAGACTTCGCCGCAGCCTCCTCCCCCCGCTCCTCCCTCTCAAGA
GCCGCTGGCGCTGGCACTGCCGCCGCAGAGGTCGACGACAACGCAAGCCC
GCGGCGGCGGGGGCGGCGACGCCCCTCGGTGGGCCTGATCGAGGCCCGCC
CCCCGCCCACCCTGGAGGCGGCTCTGGCAAGGGGCTCTGCTGACCCCCGT
GTGTACTCGCTAGCTCCCTCGTCTGTGGACGTTCTCAGGGAGGTCGGCGT
GTGGGATGGGGTGCGGTCGCGGGGGGCAGGGGAAGAGGAGGTGGGAGTAC
GACCACGATGTCCTCGTTGTAGGCGGGGGGATCGTGGGCTGCACCTTAGC
CTGCCGCCTCGCCCAAGACTTCGCCGCAGCCTCCTCCCCCCGCTCCTCCC
TCTCAAGAGCCGCTGGCGCTGGCACTGCCGCCGCAGAGGTCGACGACAAC
GCAAGCCCGCGGCGGCGGGGGCGGCGACGCCCCTCGGTGGGCCTGATCGA
GGCCCGCCCCCCGCCCACCCTGGAGGCGGCTCTGGCAAGGGGCTCTGCTG
ACCCCCGTGTGTACTCGCTAGCTCCCTCGTCTGTGGACGTTCTCAGGGAG
GTCGGCGTGTGGGATGGGGTGCGGTCGCGGGGGGCAGGGGAAGAGGAG
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