mRNA_L-elsbetiae_contig15964.4112.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15964.4112.1
Unique NamemRNA_L-elsbetiae_contig15964.4112.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15964.4112.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.500e-42
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 2 
Query:    2 RSMYDSDLAGGAGAAPEFKAINRHVETATPALTRLSFFGSTYGDDDPGSNKAEHAEVLAEKQKKGEKLARVGGGVKGSKVHNTKKAMADDEYSQEGSE 295
            RSM+DSDLA GAGAA E  AI RHVETATPALTRLSFFGSTYGDDDPGSNKA+HA+ LAEKQKKG KLARVG GV+ +KVHNT+KAMADDEYSQ GSE
Sbjct:  436 RSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGSE 533
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15964.4112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBI1_ECTSI1.500e-4283.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15964contigL-elsbetiae_contig15964:2446..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size744
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15964.4112.1prot_L-elsbetiae_contig15964.4112.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15964 2892..3723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.8164222-UTR-L-elsbetiae_contig15964:2445..28911622815656.8164222-UTR-L-elsbetiae_contig15964:2445..2891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15964 2446..2891 -
1691683018.7879643-UTR-L-elsbetiae_contig15964:2445..28911691683018.7879643-UTR-L-elsbetiae_contig15964:2445..2891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15964 2446..2891 -
1622815656.8521743-UTR-L-elsbetiae_contig15964:3723..37301622815656.8521743-UTR-L-elsbetiae_contig15964:3723..3730Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15964 3724..3730 -
1691683018.8220625-UTR-L-elsbetiae_contig15964:3723..37301691683018.8220625-UTR-L-elsbetiae_contig15964:3723..3730Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15964 3724..3730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.83007-CDS-L-elsbetiae_contig15964:2891..30641622815656.83007-CDS-L-elsbetiae_contig15964:2891..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15964 2892..3064 -
1691683018.801206-CDS-L-elsbetiae_contig15964:2891..30641691683018.801206-CDS-L-elsbetiae_contig15964:2891..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15964 2892..3064 -
1622815656.8419044-CDS-L-elsbetiae_contig15964:3605..37231622815656.8419044-CDS-L-elsbetiae_contig15964:3605..3723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15964 3606..3723 -
1691683018.812522-CDS-L-elsbetiae_contig15964:3605..37231691683018.812522-CDS-L-elsbetiae_contig15964:3605..3723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15964 3606..3723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15964.4112.1

>prot_L-elsbetiae_contig15964.4112.1 ID=prot_L-elsbetiae_contig15964.4112.1|Name=mRNA_L-elsbetiae_contig15964.4112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MYDSDLAGGAGAAPEFKAINRHVETATPALTRLSFFGSTYGDDDPGSNKA
EHAEVLAEKQKKGEKLARVGGGVKGSKVHNTKKAMADDEYSQEGSE*
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mRNA from alignment at L-elsbetiae_contig15964:2446..3730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15964.4112.1 ID=mRNA_L-elsbetiae_contig15964.4112.1|Name=mRNA_L-elsbetiae_contig15964.4112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1285bp|location=Sequence derived from alignment at L-elsbetiae_contig15964:2446..3730- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCATGTACGATTCGGACCTGGCGGGAGGTGCCGGGGCGGCACCGG
AGTTCAAGGCGATCAACAGGCACGTTGAGACGGCGACTCCAGCGTTGACC
CGTCTCAGCTTTTTCGGAAGCACGTGTAAGTAAGAATGAGGCACGTTTCT
CTGCTGCTGCTGCTGTGATGTTTCGTATAAACAACGTCTCATTTGTAGGT
CAGACCCGGGAGAAGATCGGCGTTTGCACGCAGTATCCTTCTGGGGTGGA
ACCCAAGAAATTGTAATGCCTAGGCAAGACTCTAGTATCGGTGTGTTTGT
TTTTCGCTCCCAGCAACGACCCCCCAGGCGCAACTCAAGTTTTTTCTGCT
CTTTGGGCTCGCTCTCTCTGAGTTGAACCGCATGGCACGCTGTATTCGTA
GAACCAAAAGTGAATGAGTTCGTTTTGGCCACAGCAGTGCTGTACCCGGG
CCCGTTTTGCTCAGGTGTGCTCGAAGAAGCAAGACCACGATTCCAAAAGA
CTGGAGGCGAGTTCGAATTGAAGTGCTCTCGTCACCTCACCGAGTCACCG
TGCCCTTTTACAGCAGGATCCTTTATGTGGTGCCCCACGTGCTCAGTCCC
CCCACCCCACCCCCCATGCTTTTCACGTTTCACGACCGCGCCCAATGGCA
CTCATTGCGGCCGCAGACGGCGATGACGACCCCGGCTCGAACAAAGCGGA
GCACGCCGAAGTGTTGGCGGAGAAGCAGAAGAAAGGGGAGAAGCTCGCTC
GTGTGGGAGGAGGCGTGAAGGGATCAAAAGTCCACAACACGAAGAAGGCC
ATGGCAGACGACGAGTATTCCCAAGAGGGATCTGAGTAACTTCCGCCACC
CGTGCCAGCTTCTTGTTTCGCCGACGGAACATTTGGTTGTTTTTGGCAGC
ACGGGGCCAATCTCTTAGTCGCTTGCGTGGCGATGTACAAGACAGTAATA
GTAGTCCTCCCGCCTCGTTTTTTTCGGTTGTGTTGTCACCTCGCGCCCAC
TGAGAGGCAGGCGCCTCCGTTTGGTTCAGTGTCGTTAAAAGAGGATTGAA
TGTCTGTGCACTACATACGAAGAAAGAGGAGGGCACGCCCAAACGCTCTC
GCAAGGGGGCACTTTTTGGTGCAGAACATGTGCGAAGCCCGCGTGCGGCG
GGCAGCGTTTCTAATGCGCATGCACCGTGCCCGAACTCAGTTGGCCGGTT
GCTGCTGCAGGACTAGAGTTTGACCGAGGGCTTGAATTACAGTAGTTTTG
AGTGAAAACATGATCCTGTCGTTTTCCGGCAATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15964:2446..3730-

>mRNA_L-elsbetiae_contig15964.4112.1 ID=mRNA_L-elsbetiae_contig15964.4112.1|Name=mRNA_L-elsbetiae_contig15964.4112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig15964:2446..3730- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGATTCGGACCTGGCGGGAGGTGCCGGGGCGGCACCGGAGTTCAA
GGCGATCAACAGGCACGTTGAGACGGCGACTCCAGCGTTGACCCGTCTCA
GCTTTTTCGGAAGCACGTATGTACGATTCGGACCTGGCGGGAGGTGCCGG
GGCGGCACCGGAGTTCAAGGCGATCAACAGGCACGTTGAGACGGCGACTC
CAGCGTTGACCCGTCTCAGCTTTTTCGGAAGCACGTACGGCGATGACGAC
CCCGGCTCGAACAAAGCGGAGCACGCCGAAGTGTTGGCGGAGAAGCAGAA
GAAAGGGGAGAAGCTCGCTCGTGTGGGAGGAGGCGTGAAGGGATCAAAAG
TCCACAACACGAAGAAGGCCATGGCAGACGACGAGTATTCCCAAGAGGGA
TCTGAGTAAACGGCGATGACGACCCCGGCTCGAACAAAGCGGAGCACGCC
GAAGTGTTGGCGGAGAAGCAGAAGAAAGGGGAGAAGCTCGCTCGTGTGGG
AGGAGGCGTGAAGGGATCAAAAGTCCACAACACGAAGAAGGCCATGGCAG
ACGACGAGTATTCCCAAGAGGGATCTGAGTAA
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