mRNA_L-elsbetiae_contig1595.4106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1595.4106.1
Unique NamemRNA_L-elsbetiae_contig1595.4106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: D8LLJ9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ9_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 6.300e-85
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTMLEKEGPGGDGDSG 414
            +VEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRG EAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKD+ERST L+++G GG GDSG
Sbjct:    9 IVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSTKLKEDGQGG-GDSG 145          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A6H5K420_9PHAE (DUF1681 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K420_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 3.160e-80
Identity = 124/133 (93.23%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTMLEKEGPGG 399
            +VEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRG EAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKD+ERS  L++ G GG
Sbjct:    9 IVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSAKLKEGGQGG 141          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A4D9CRU7_9STRA (DUF1681 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRU7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 9.800e-43
Identity = 69/125 (55.20%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    4 VEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTML 378
            VE TL QI+  ++F++PPR  A G+ A+D   ++W G +++VQ+GL+AAI+L D + G LFAM  + +G+VER  DSSRYFV+K+QNA G+HAF+G+AFD+R QAFDFNVA+QE++KD ER   L
Sbjct:   10 VERTLCQIRSVHVFKIPPRTSAGGYRASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERL 134          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A1Z5JP51_FISSO (DUF1681 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP51_FISSO)

HSP 1 Score: 136 bits (343), Expect = 7.790e-38
Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTMLEK 384
            V+E     I + ++F+LPPR  A GW  AD  K++W G ++VV+RG    I+LVD +   +FA+C V+DGAV+R  DSSRYFV+K++NA G+H FVG+AF++RN AFDFN AL++ +++ E    + K
Sbjct:   26 VIERVRCTIPDAHIFKLPPRPTAGGWRGADWDKEVWQGTLKVVERGDLTVILLVDPKKNSIFAVCPVSDGAVDRCVDSSRYFVLKVENADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQNMAK 153          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A7S2YCS3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.680e-37
Identity = 58/121 (47.93%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVE 363
            VVE     I + ++F+LPPR  A GW  AD  +++W G ++VV+RG    ++LVDR  G +FA+C V DGAV+R  DSSRYFV++++NA GRH ++G+AF++RN AFDFN +L++ +++ E
Sbjct:   26 VVERVRCSIPDAHVFKLPPRQTAGGWRGADWDQEVWQGTLKVVERGDLTVVLLVDRTSGAIFAVCPVKDGAVDRCVDSSRYFVLRVENANGRHIYIGMAFNERNDAFDFNTSLEDSRRERE 146          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A7S3LCD2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCD2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.540e-36
Identity = 62/137 (45.26%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQ-GRHAFVGLAFDDRNQAFDFNVALQEFK--KDVERSTMLEKEGPGGD 402
            V+E     I + ++F+LP R  A GW  AD  +++W G ++VV+RG    I+LVDR +G +FA+C V DGAV+R  DSSRYFV++++NAQ GRH ++G+AF++RN AFDFN +L++ +  K++E + ++ ++GP  D
Sbjct:   26 VIERVRCSIPDAHVFKLPHRPTAGGWRGADWDQEVWQGTLKVVERGDLTVILLVDRANGGIFAVCPVQDGAVDRCVDSSRYFVLRVENAQNGRHMYIGMAFNERNDAFDFNTSLEDSRREKEIEAAPVVVEQGPAKD 162          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A8J9SYL8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SYL8_PHATR)

HSP 1 Score: 129 bits (325), Expect = 9.040e-36
Identity = 57/128 (44.53%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTMLEK 384
            V+E     I + ++F+LPPR  A GW  AD  +++W G ++VV+RG    I+L D+    +FA+C V +GAV+R  DSSRYFV++++NA GRH F+GLAF++RN AFDFN +L++ +++ E     E+
Sbjct:    5 VIERVRCVIPDAHVFKLPPRQTAGGWRGADWDQEVWQGTLKVVERGALTVILLTDKTTHAIFAVCPVKEGAVDRCVDSSRYFVLRVENAAGRHMFIGLAFNERNDAFDFNTSLEDSRREKEAEANPEE 132          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A6V2CJW3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CJW3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.260e-35
Identity = 58/126 (46.03%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVRAQ-GWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSTM 375
            ++E     IQ  ++F+LPPR     GW  AD   ++W G ++VV+RG   A++LVDR  G +FA+C V +G+++R  DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL++ +++ E   M
Sbjct:   19 LIERVRVTIQNAHVFKLPPRQTVSVGWRGADWKDKVWQGTVKVVERGDMTAVLLVDRTKGSIFAVCPVREGSIDRCVDSSRYFVLRIENATGRHMFIGVAFNERNDAFDFNTALEDSRREKEAELM 144          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A7S2WIV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIV9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.470e-34
Identity = 59/122 (48.36%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 VVEHTLTQIQECYLFELPPRVR-AQGWLAADMTKQMWTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVE 363
            VVE     I+  ++F+LPPR   A GW  AD  +++W G ++VV+RG   A++LVD+  G +FA+C V +G+V+R  DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL++ +++ E
Sbjct:   49 VVERVRVTIKNAHVFKLPPRQTVAVGWRGADWKEKVWQGTVKVVERGDMTAVLLVDKGTGNIFAVCPVREGSVDRCIDSSRYFVLRIENATGRHMFIGVAFNERNDAFDFNTALEDSRRERE 170          
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Match: A0A482RQS2_9ARCH (DUF1681 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQS2_9ARCH)

HSP 1 Score: 124 bits (312), Expect = 9.710e-34
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    4 VEHTLTQIQECYLFELPPRVRAQGWLAADMTKQM-WTGRMRVVQRGLEAAIMLVDRRDGKLFAMCKVADGA-VERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVER 366
            +E TL Q+   ++F +P R  A G+ AAD  K   WTG+++VV RG + A++L D  +  +FA+C+V D + VER  DS RYFV+KI NAQGRHAF+G+AF++R+ AFDFNVAL  FK + ER
Sbjct:    5 IERTLCQLPSVHVFRIPARTSADGYRAADWPKDPNWTGKLKVVARGTKLAVVLHDAANA-VFAICQVTDDSCVERTLDSGRYFVLKISNAQGRHAFIGIAFNERSDAFDFNVALSNFKSEQER 126          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1595.4106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ9_ECTSI6.300e-8593.48DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K420_9PHAE3.160e-8093.23DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4D9CRU7_9STRA9.800e-4355.20DUF1681 domain-containing protein n=2 Tax=Monodops... [more]
A0A1Z5JP51_FISSO7.790e-3847.66DUF1681 domain-containing protein n=2 Tax=Fistulif... [more]
A0A7S2YCS3_9STRA4.680e-3747.93Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3LCD2_9STRA4.540e-3645.26Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J9SYL8_PHATR9.040e-3644.53Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6V2CJW3_9STRA3.260e-3546.03Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2WIV9_9STRA6.470e-3448.36Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A482RQS2_9ARCH9.710e-3451.22DUF1681 domain-containing protein n=1 Tax=archaeon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1595contigL-elsbetiae_contig1595:12899..16761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.2
Seed ortholog evalue2.8e-67
Seed eggNOG ortholog2880.D8LLJ9
Preferred nameNECAP1
KEGG koko:K04554,ko:K11673,ko:K12608,ko:K20069
KEGG Pathwayko03018,ko04120,ko04141,ko05012,map03018,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko04121,ko04131
Ec32 ortholog descriptionAdaptin ear-binding coat-associated protein 1 NECAP-1
Ec32 orthologEc-04_005560.1
Exons4
Model size415
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1595.4106.1prot_L-elsbetiae_contig1595.4106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1595 12900..16761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.3661582-CDS-L-elsbetiae_contig1595:12899..129601622815656.3661582-CDS-L-elsbetiae_contig1595:12899..12960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 12900..12960 -
1691683018.4798503-CDS-L-elsbetiae_contig1595:12899..129601691683018.4798503-CDS-L-elsbetiae_contig1595:12899..12960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 12900..12960 -
1622815656.3769562-CDS-L-elsbetiae_contig1595:14143..143291622815656.3769562-CDS-L-elsbetiae_contig1595:14143..14329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 14144..14329 -
1691683018.4932466-CDS-L-elsbetiae_contig1595:14143..143291691683018.4932466-CDS-L-elsbetiae_contig1595:14143..14329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 14144..14329 -
1622815656.3875842-CDS-L-elsbetiae_contig1595:15552..156391622815656.3875842-CDS-L-elsbetiae_contig1595:15552..15639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 15553..15639 -
1691683018.5066342-CDS-L-elsbetiae_contig1595:15552..156391691683018.5066342-CDS-L-elsbetiae_contig1595:15552..15639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 15553..15639 -
1622815656.3996966-CDS-L-elsbetiae_contig1595:16681..167611622815656.3996966-CDS-L-elsbetiae_contig1595:16681..16761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 16682..16761 -
1691683018.5172274-CDS-L-elsbetiae_contig1595:16681..167611691683018.5172274-CDS-L-elsbetiae_contig1595:16681..16761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 16682..16761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1595.4106.1

>prot_L-elsbetiae_contig1595.4106.1 ID=prot_L-elsbetiae_contig1595.4106.1|Name=mRNA_L-elsbetiae_contig1595.4106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
VVEHTLTQIQECYLFELPPRVRAQGWLAADMTKQMWTGRMRVVQRGLEAA
IMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAF
DDRNQAFDFNVALQEFKKDVERSTMLEKEGPGGDGDSG
back to top

mRNA from alignment at L-elsbetiae_contig1595:12899..16761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1595.4106.1 ID=mRNA_L-elsbetiae_contig1595.4106.1|Name=mRNA_L-elsbetiae_contig1595.4106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3863bp|location=Sequence derived from alignment at L-elsbetiae_contig1595:12899..16761- (Laminarionema elsbetiae ELsaHSoW15)
GTCGTAGAGCACACGCTGACGCAGATCCAGGAGTGCTACCTGTTCGAGCT GCCTCCGCGAGTCAGGGCACAAGGATGGCTGTAAGTGTTTTTTGTTTCTC TTTTAAGGATGGCTCTTAATAAGTGTTTTTTGCTTCCGGTGTCGTTTTGT CGTTCTCTGTTTCTGTTTTTTTTTTGGCTCACCGCACGCAAGCGCACAAG CACGGCTGATAGACGGGAATACGGGACGGTAAGGCCCTCGATACGGGACA GCAAGGCCCTCCTCTACTCTCTTTTTCTTCCTTCCTCCATCGGCGGTGCC TTTAACGTTCACTTCTGACATTTTTTTTTGTGCCGGCCGCTGGGACGCCC CGCCGCTGCTGGCCTGCTGAATTGAATCGAATCGAATAAATATGTGCCAC TATCTGTTTTCATCTTTAGCCTGTCTCTTTTGCCACGAGGCTCGCGGGGT TTTGCACGAAGAGCCTGGGGATGATGTTGCTTGTCGCTCTTTGGTTTTTT GTGCTGGCGTCGTCGTCCGTCCGTACACCGCGGTAGATACAGGTTCATGC TGCCATCGTGTACCCTCCAACAGCAGTAGCATGTACTGACTTCTACTCTG TCGTATAAGAACAGTAGTCAGTCAGTGTGTGATGACATTTCTCTCATCTT TGATTTATTCATTGTTCGTGATGCACAATAAATAATCAGCTGACATCTAC CGTTTCCGTGTCCGTGTCTTGTGTTTGACGACGACGACGATGCCTGGATG ATGCCTCTGCTTTATTTTTTTATTTTTTTGTTGTGTCCGCTCCCTCCCTC TGTCTCTCTCGCCTTGCCTTTGCCTGGCCTGACCTTGCCTTTATTTTTGC CCTTGGCCTTTTGTTTGTGGCCTTTTGTTTTTGGCCTTTTGTTTTTTACC TTTTGTGTTTGACCTTTGGTTTTTGGCCTTTTGTTTTTGGCCTTTTTTTT TTTACCTTTTGTTTTTACCTTTTGTTTTTGGCCTTTTTTTCTTGACCCCT TGTTTTTGACCTTTTGTTTTTTTTAACTTTTGTTTTTGGCCTTTTATTCT TAACCTTGTGTTTTTGACCTTTTGGGCGCTTGCGTCGCGATTGTTTCGGT CGGCCGGTGGAAACAAAAACAGGGCTGCCGACATGACGAAGCAGATGTGG ACGGGCCGGATGAGGGTGGTGCAGAGGGGGCTCGAGGCGGCCATCATGCT TGTCGACAGGTACAGTAGTAGTAGTACCGCCGTAATCATGCGAGAGGCGA CACCCATCGTAGTTTATCGCACCCGTTGGAGTAGTCATGGCACCGGGGTG CGATAAAAATATAAAAATCAGAGAAATTATTTTTAGAAACGATCGCATCT CCTCGGTGCCATCACTCGCATGCATGACTACGGTACTGCTCTTGCTCGGC GCTTTGTTTCGTGACTTTTGGATTTTTTGCATTGAGGGTGTGGTTTGGCC CGAGCAGGCGGTAGAGGCGGTGCGGTGTGCTGCTGCTATTACCGGCTTTT TGCAGCGGTAATACAAGTACGTACATGCGGTAAGGTATAGGCTTCTTTTG CAATAGAGCCAGCCCCCAATTCTCAAAAAGAGCTGTGGGGGCAGCACATA AGTGCCCGAGTGCGCTGGAGTAGTACTTTGTTTGGCTAAAGAGCCCCCCC CAAATAAAATAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGTATTTATCTACTGTAGGAAATACTGAAATAGAGTGAAAACAATCTC CACAGCCATTTTTTCAGAATGGGGGGGGGGGGGGCTGCTGCTGCTGGAAG CCTATAGTTTGGTGTCGTGCGACATGGTCTCGTGCGTTGTTTCGTAGGAA TCGCTCGTTCAAGTCGGTCCGTTAGTCGTGGTCGGAAGGAGGGGAACATT CGAATATTCCAGGGGTTGCCGTTCTTTCACTTCATGGGCGCTCTCCCTCC CTCCTCCCCTCTCTCTCTCTCTTTCTTCCTCTCTCTCTCTCTCTCTCTTC TTCATGTCTTGATGAAGCCTTTCTTTTTATCGTATTGAGCCCCGTGTGGA ACCCACATGCTGAGGAGGATTGCGAGGTTTGCGATCCCCGCTGTTGATTT TTTCAACAAGGCTTTTGTAACGAAAGAGCAACAAGAGAGACTGGAGGTAT ATCGCAGTTCTGCGTACCGGGGAGGGTTTTCATGCAGTGGCGTGTGGGTG TAAGCGTCAGGCAGTGCGTGCGGTGGTGGTTGTTGTTGTTGTTGTTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGGGTAAAATCGAATA ATTCTGTAACAAATAAAATAAACAAATAAACTAGACTCAAAAAAGCACAA AATAGGGTCAACAGCTATAACTGGCAGATGTTAACTGATCTATTTACATG TGTGCATCATACACACACTACTTTTGACACAGACGGGACGGCAAGCTGTT CGCGATGTGCAAGGTGGCGGACGGGGCGGTGGAGCGCGTCCCGGACAGCA GCCGCTACTTCGTCATCAAGATTCAGAACGCGCAGGGCCGGCACGCGTTC GTGGGACTGGCCTTTGACGACCGCAACCAGGCCTTCGACTTCAACGTGGC CCTGCAAGAGTTCAAGAAGTGAGGGGTGGCGTGTGGCGGGTGTGAGTGCA TAGGGGAGGGGGGCTCCGTAAAGCGGGGGTTGGAGGGGTCAAGGGTACGG TTTCAGAACGTGCAGGGGCTGACCTTTGACGACTGCAGCCAGGCCTTGAA GGGTTCAAAGAAGTGAGGGGGTGGCTTTGAAACGGTTGTGGTGGTGGTGA GGAGGGGTTCCGTCTATACAGTAGTGGGGTCGGAAGGGTAGGGTATGATT GAGCACGGACGGCAGGTAATTGTACAGTGTGTACATACCAGGTGCAATTG ATTTTTGGTGTTGTTGTGCGGATGTAGAGTACAGACGCGATGGAGATGCT TGGCTTGCGAGATAAAATACATCCCTGGCTGTAGCAGTACTCCTATGCGA CGGTCGTCTTCAAAAGCGGTCATGTACGTAGTGGTAGTGTGGCCAGCGGC GGCGGTGTCGGGGGGCCCCCGAACTGCAATCGATTCCAGCGTTTCGGGAG CTGGACCCGTCTGCCGGATGCCACACTGACACCGCTGCCGCGATGCGAAA CGGCCTACCTTGGTGGTACTGCTGTTGTGCTGGGCGTGAACAACAAACAG CCACTACGTGGGTGTACAGCAACTCTCGTTTTGCGCCCGCTTAGTTCGTT GCTGTTGCTGTTGCTGTTGCTGCTCCTGCTGCTGTTGCTGTTGCTTCTCA GGGCGTCGTTAGTCCATTGGGGTTGGGTAGGAAGGGGTGGGGTTGCCCTA GTCGTGCTGGTGTGAGAGGGGGGGGGGGGGGGGGGGGGGGTGTCGCTGCG CGGTGCGTGTGCGCTGGCGATCTCTTGTGTTGGGCGTGGGGGTGGTGCGC AGCTGCGTCGGNNNNTTGTTGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGCTGTGTCCCGTCGGTGAAGACTTTTCGCTCGTGA TTTTGTTGCTCGTGGTCATGATGGCTAGCTAACCCACTTGGCGAAAATAC TCCATGACGCCCCCCTCCCCCCTCCCCTCCCCCCTCCCTTCACCTGCCCC CCATGCGTGTTTGATGTGTGTGTGTGTGTGCTTAGGGTACGCCCCCTGTT CTAATGATACGTACGTGCGCGTGCTGCGAAACATCCGCCACATACGAGCA GAGACGTCGAGCGGAGCACGATGCTGGAGAAGGAAGGACCGGGGGGCGAC GGCGACTCGGGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1595:12899..16761-

>mRNA_L-elsbetiae_contig1595.4106.1 ID=mRNA_L-elsbetiae_contig1595.4106.1|Name=mRNA_L-elsbetiae_contig1595.4106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1595:12899..16761- (Laminarionema elsbetiae ELsaHSoW15)
GTCGTAGAGCACACGCTGACGCAGATCCAGGAGTGCTACCTGTTCGAGCT
GCCTCCGCGAGTCAGGGCACAAGGATGGCTGTCGTAGAGCACACGCTGAC
GCAGATCCAGGAGTGCTACCTGTTCGAGCTGCCTCCGCGAGTCAGGGCAC
AAGGATGGCTGGCTGCCGACATGACGAAGCAGATGTGGACGGGCCGGATG
AGGGTGGTGCAGAGGGGGCTCGAGGCGGCCATCATGCTTGTCGACAGGGC
TGCCGACATGACGAAGCAGATGTGGACGGGCCGGATGAGGGTGGTGCAGA
GGGGGCTCGAGGCGGCCATCATGCTTGTCGACAGACGGGACGGCAAGCTG
TTCGCGATGTGCAAGGTGGCGGACGGGGCGGTGGAGCGCGTCCCGGACAG
CAGCCGCTACTTCGTCATCAAGATTCAGAACGCGCAGGGCCGGCACGCGT
TCGTGGGACTGGCCTTTGACGACCGCAACCAGGCCTTCGACTTCAACGTG
GCCCTGCAAGAGTTCAAGAAACGGGACGGCAAGCTGTTCGCGATGTGCAA
GGTGGCGGACGGGGCGGTGGAGCGCGTCCCGGACAGCAGCCGCTACTTCG
TCATCAAGATTCAGAACGCGCAGGGCCGGCACGCGTTCGTGGGACTGGCC
TTTGACGACCGCAACCAGGCCTTCGACTTCAACGTGGCCCTGCAAGAGTT
CAAGAAAGACGTCGAGCGGAGCACGATGCTGGAGAAGGAAGGACCGGGGG
GCGACGGCGACTCGGGCAGACGTCGAGCGGAGCACGATGCTGGAGAAGGA
AGGACCGGGGGGCGACGGCGACTCGGGC
back to top