mRNA_L-elsbetiae_contig1595.4105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1595.4105.1
Unique NamemRNA_L-elsbetiae_contig1595.4105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1595.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1595contigL-elsbetiae_contig1595:9841..10278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1595.4105.1prot_L-elsbetiae_contig1595.4105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1595 9939..10277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.1848059-UTR-L-elsbetiae_contig1595:9840..99381622815656.1848059-UTR-L-elsbetiae_contig1595:9840..9938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1595 9841..9938 +
1691683018.3560627-UTR-L-elsbetiae_contig1595:9840..99381691683018.3560627-UTR-L-elsbetiae_contig1595:9840..9938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1595 9841..9938 +
1622815656.2095394-UTR-L-elsbetiae_contig1595:10277..102781622815656.2095394-UTR-L-elsbetiae_contig1595:10277..10278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1595 10278..10278 +
1691683018.386302-UTR-L-elsbetiae_contig1595:10277..102781691683018.386302-UTR-L-elsbetiae_contig1595:10277..10278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1595 10278..10278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.1950152-CDS-L-elsbetiae_contig1595:9938..102771622815656.1950152-CDS-L-elsbetiae_contig1595:9938..10277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 9939..10277 +
1691683018.3678558-CDS-L-elsbetiae_contig1595:9938..102771691683018.3678558-CDS-L-elsbetiae_contig1595:9938..10277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1595 9939..10277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1595.4105.1

>prot_L-elsbetiae_contig1595.4105.1 ID=prot_L-elsbetiae_contig1595.4105.1|Name=mRNA_L-elsbetiae_contig1595.4105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MPGDALDRSCLLTPVCRGTMHAQPRSQPEGALRTTRPAGRSPSRTDSRHR
RWERRLLEGKQPEGLEKTGQQQDTPRLARQPGAAAAAAAAVAGEPEELEK
MGPQQDKPRLAH*
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mRNA from alignment at L-elsbetiae_contig1595:9841..10278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1595.4105.1 ID=mRNA_L-elsbetiae_contig1595.4105.1|Name=mRNA_L-elsbetiae_contig1595.4105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1595:9841..10278+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGTTTCCGCCTCCACCCCCGCCCCGCACACCGACCACGACGGGGAGG
GGCCACACCGCAGCTGGTACTCAAGACTCCGGAAAAAGAGTCATCCTCAT
GCCAGGAGACGCCCTCGATCGGTCGTGTTTATTGACGCCTGTGTGCAGGG
GCACCATGCACGCACAGCCACGCTCGCAACCAGAGGGCGCGCTTAGAACA
ACCCGTCCAGCAGGTCGTTCACCGTCGCGGACTGATTCCCGCCACCGGCG
GTGGGAGCGGCGCCTGCTTGAGGGAAAGCAGCCTGAGGGGCTTGAGAAAA
CGGGTCAGCAGCAGGATACGCCGCGGTTGGCGCGCCAGCCTGGTGCTGCT
GCTGCTGCTGCTGCTGCTGTTGCTGGTGAGCCTGAGGAGCTTGAGAAAAT
GGGTCCGCAGCAGGATAAGCCGCGGTTAGCGCACTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1595:9841..10278+

>mRNA_L-elsbetiae_contig1595.4105.1 ID=mRNA_L-elsbetiae_contig1595.4105.1|Name=mRNA_L-elsbetiae_contig1595.4105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1595:9841..10278+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGGAGACGCCCTCGATCGGTCGTGTTTATTGACGCCTGTGTGCAG
GGGCACCATGCACGCACAGCCACGCTCGCAACCAGAGGGCGCGCTTAGAA
CAACCCGTCCAGCAGGTCGTTCACCGTCGCGGACTGATTCCCGCCACCGG
CGGTGGGAGCGGCGCCTGCTTGAGGGAAAGCAGCCTGAGGGGCTTGAGAA
AACGGGTCAGCAGCAGGATACGCCGCGGTTGGCGCGCCAGCCTGGTGCTG
CTGCTGCTGCTGCTGCTGCTGTTGCTGGTGAGCCTGAGGAGCTTGAGAAA
ATGGGTCCGCAGCAGGATAAGCCGCGGTTAGCGCACTAGATGCCAGGAGA
CGCCCTCGATCGGTCGTGTTTATTGACGCCTGTGTGCAGGGGCACCATGC
ACGCACAGCCACGCTCGCAACCAGAGGGCGCGCTTAGAACAACCCGTCCA
GCAGGTCGTTCACCGTCGCGGACTGATTCCCGCCACCGGCGGTGGGAGCG
GCGCCTGCTTGAGGGAAAGCAGCCTGAGGGGCTTGAGAAAACGGGTCAGC
AGCAGGATACGCCGCGGTTGGCGCGCCAGCCTGGTGCTGCTGCTGCTGCT
GCTGCTGCTGTTGCTGGTGAGCCTGAGGAGCTTGAGAAAATGGGTCCGCA
GCAGGATAAGCCGCGGTTAGCGCACTAG
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