mRNA_L-elsbetiae_contig15949.4102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15949.4102.1
Unique NamemRNA_L-elsbetiae_contig15949.4102.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: D7G3Y0_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y0_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 2.970e-136
Identity = 202/220 (91.82%), Postives = 212/220 (96.36%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKIGLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLLAG 660
            + QAYADYHDMMELTE+LVAGAA+EVLGTT V GGEE+G+PPD+DLKAPWRRVTMNDLV+EKIGLDFE+LDMSDP AALATAR  AL AGVHKA GLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHR+KPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVD+DFLDALERGMPPTAGLGIGIDRLIMLLAG
Sbjct:  460 VYQAYADYHDMMELTERLVAGAASEVLGTTAVSGGEEEGAPPDVDLKAPWRRVTMNDLVREKIGLDFEALDMSDPAAALATARETALKAGVHKAAGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLLAG 679
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A835Z710_9STRA (Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z710_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.230e-88
Identity = 148/218 (67.89%), Postives = 169/218 (77.52%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKIGLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            I QAYADY DMM+LTEKL+  AA  V G +T +  +      ++ L APWRRVTM+DLVK   G DFE+   +D    +A A+  A  AGVH A G  T G ILNECFEELCE+ LIQPT V D+P+EVSPLAKPHRSKPGYTERFE+F+ GRE ANAFSELTD VDQR RFE+QAAKKAAGD+EACDVDEDF+DALE G+PPTAGLGIGIDRLIMLL
Sbjct:  252 IYQAYADYSDMMDLTEKLITNAARRVCGGSTEISYQGT----EISLTAPWRRVTMSDLVKGACGFDFEAC--TD----VAEAKRVAAGAGVHSAAGKATVGEILNECFEELCESSLIQPTFVTDYPVEVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDSVDQRQRFEVQAAKKAAGDDEACDVDEDFIDALEYGLPPTAGLGIGIDRLIMLL 459
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A7S2U5Z7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5Z7_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.190e-87
Identity = 144/221 (65.16%), Postives = 172/221 (77.83%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKI-GLDFESLDMSDPKAALATARGAALNAGV--HKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAY DY DMMELTE+LV G A  +  + T+  GE+      + L+ PWRRVTM+D+VKE++   DF +LD +DP + L+ A+ AAL AGV   K  GL T GY+LN CFEELCEA L+QPT V+D+P+EVSPLAKPHR+KPG  ERFE+F  GRE+ANAFSELTDPVDQR RFE QAAKKAAGDEEACDVDE+FL ALE+GMPP  GLGIGIDRL+MLL
Sbjct:  135 LYQAYVDYSDMMELTEQLVCGMAMSIGDSLTLPYGEDM-----ISLERPWRRVTMHDVVKEQMPDFDFAALDPNDPDS-LSKAKEAALAAGVAFSKVDGLTTVGYVLNMCFEELCEAKLVQPTFVIDYPVEVSPLAKPHRTKPGLVERFELFATGRELANAFSELTDPVDQRQRFEAQAAKKAAGDEEACDVDEEFLQALEQGMPPAGGLGIGIDRLVMLL 349
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A7S2SVL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVL9_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.490e-87
Identity = 143/220 (65.00%), Postives = 167/220 (75.91%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKI--GLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QA+ADYHDMM++TE++V+G A  + GTTTV    E      +DL  PWRRV+M+DLVKE    G DF  LD +D  A +  AR AA  AGV       + G ILNECFE LCE  LIQPT V+DHP E+SPLAKPHRSKPG TERFE+FV GRE+ANAFSELTDP+DQR RFELQAAKKA+GDEEA DVDED+L A+E+GMPPT GLGIGIDRL+MLL
Sbjct:   50 LYQAFADYHDMMDITEEIVSGLAEALHGTTTVSYQGES-----IDLSRPWRRVSMSDLVKEAHPDGFDFAQLDPTDATA-VDQARAAAEKAGVPNVASKTSVGSILNECFEHLCEESLIQPTFVLDHPKEISPLAKPHRSKPGCTERFELFVVGRELANAFSELTDPIDQRQRFELQAAKKASGDEEAHDVDEDYLQAMEQGMPPTGGLGIGIDRLVMLL 263
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: B7FQH9_PHATC (Lysine--tRNA ligase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQH9_PHATC)

HSP 1 Score: 271 bits (694), Expect = 4.990e-86
Identity = 143/219 (65.30%), Postives = 169/219 (77.17%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKI-GLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAYADY DMM LTE+LV   A EV G+ ++  GE       + L+ PWRRVTM+D+VKE++   DF +LD   P++ L TA+ AA+ AGV    GL T GY+LN CFEELCE  LIQPT V+D+P++VSPLAK HR+KPG TERFE+F  GRE ANAFSELTDP+DQR RFE QAAKKAAGDEEACDVDEDFL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  252 LYQAYADYDDMMNLTEELVCTIAEEVCGSLSIPYGEHM-----VSLERPWRRVTMHDIVKEEMPDFDFSALDSQLPES-LNTAKAAAIAAGVPNVQGLNTIGYVLNACFEELCEPKLIQPTFVIDYPVDVSPLAKRHRNKPGLTERFELFAVGREHANAFSELTDPIDQRERFEAQAAKKAAGDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLL 464
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A7R9WDT7_9STRA (Lysine--tRNA ligase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT7_9STRA)

HSP 1 Score: 270 bits (690), Expect = 6.740e-86
Identity = 143/219 (65.30%), Postives = 169/219 (77.17%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKIG-LDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAYADY DMM LTEKL+ G    V  + ++  GE       ++L++PWRRVTM+D+VKE++   DF +LD SDP++ +  AR AA   GV K   + T G ILN CFEELCE  LIQPT V+D+P+EVSPLAKPHRSKPG TERFE+F+ GRE+ANAFSELTDPVDQR RFE QAAKK AGDEEACDVDEDFL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  215 LYQAYADYDDMMALTEKLICGMCESVNDSLSIPYGEHT-----INLESPWRRVTMHDIVKEQMPEFDFAALDPSDPESVI-KAREAASAKGVPKVEAMNTVGDILNACFEELCEPTLIQPTFVIDYPVEVSPLAKPHRSKPGLTERFELFITGRELANAFSELTDPVDQRVRFEAQAAKKEAGDEEACDVDEDFLLALEQGMPPTGGLGIGIDRLVMLL 427
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A1Z5JNE8_FISSO (Lysine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNE8_FISSO)

HSP 1 Score: 273 bits (697), Expect = 4.480e-85
Identity = 144/218 (66.06%), Postives = 166/218 (76.15%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKIGLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAYADYHDMM+LTE+LV   A +V G+ TV  GE       +  + PWRRVTM+D+VKE++  DF  L   D +A+LA AR AA  AGV     L T G ILN CFEELCE + IQPT V+D+P+EVSPLAKPHR+K G TERFE+F  GRE AN+FSELTDPVDQR RFE QAAKKAAGDEEACDVDEDFL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  383 LYQAYADYHDMMDLTEELVCELALKVCGSLTVPYGEHQ-----ISFERPWRRVTMHDIVKERMKFDFAELQEFD-EASLAKARAAAAAAGVPDVASLPTVGQILNACFEELCEPECIQPTFVIDYPVEVSPLAKPHRTKAGLTERFELFAVGREHANSFSELTDPVDQRIRFEAQAAKKAAGDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLL 594
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A6U3S1J3_9STRA (Lysine--tRNA ligase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S1J3_9STRA)

HSP 1 Score: 274 bits (700), Expect = 5.600e-85
Identity = 146/219 (66.67%), Postives = 167/219 (76.26%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKI-GLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAYADY DMMELTEKLV G A  +  +  +  GE       + L+ PW+R+TM+D V+E I   DFESLD SDP + +  AR AA NAGV     L T G ILN CFEELCE +LIQPT V+D+P+EVSPLAKPHRSKPG  ERFE+F  GRE+AN+FSELTDPVDQR RFE QAAKKAAGDEEACDVDEDFL ALE+GMPPT GLGIGIDR+IMLL
Sbjct:  435 VYQAYADYEDMMELTEKLVCGMAESISDSLVMPYGEHT-----ISLERPWKRITMHDAVREYIPDFDFESLDPSDPSS-VTEARNAAKNAGVPNVDSLPTVGEILNACFEELCEPNLIQPTFVIDYPVEVSPLAKPHRSKPGLVERFELFGTGRELANSFSELTDPVDQRVRFEAQAAKKAAGDEEACDVDEDFLVALEQGMPPTGGLGIGIDRIIMLL 647
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BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: B8BX26_THAPS (Lysine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX26_THAPS)

HSP 1 Score: 269 bits (687), Expect = 8.870e-85
Identity = 143/218 (65.60%), Postives = 167/218 (76.61%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKIGLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            + QAYADYHDMM+LTE+LV G A EV  +  +  GE       + L+ PWRRVTM+D+VKE+I  DF+  D+SDP   L  A+ AA  AGV       T GY+LN CFEELCE  LIQPT V+D+P+EVSPL+KPHR+KPG  ERFE+F  GREMAN+FSELTDPVDQR RFE QAAKKAAGDEEACDVDE+FL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  274 LYQAYADYHDMMDLTEELVCGMANEVSDSLIMPYGEYT-----ISLERPWRRVTMHDIVKEEIP-DFD-FDLSDPST-LDAAKAAATAAGVPDVGKCSTVGYVLNACFEELCEPKLIQPTFVIDYPVEVSPLSKPHRNKPGMVERFELFATGREMANSFSELTDPVDQRERFEAQAAKKAAGDEEACDVDEEFLSALEQGMPPTGGLGIGIDRLVMLL 483
[Close]
BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Match: A0A7S2GT55_9STRA (Lysine--tRNA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GT55_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.440e-84
Identity = 144/219 (65.75%), Postives = 167/219 (76.26%), Query Frame = 1 
Query:    1 IIQAYADYHDMMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVKEKI-GLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEELCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIGIDRLIMLL 654
            I QAYADY DMM+LTE+LV G A  +  T  +  GE       + L+ PW+R+TM+D V+E I   DFESLD SDP + +  AR AA NAGV K   L T G ILN CFEELCE +LIQPT ++D+P+EVSPLAKPHRSKPG  ERFE+F  GRE+AN+FSELTDPVDQR RFE QA KKAAGDEEACDVDE+FL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  357 IYQAYADYEDMMDLTEQLVCGMAKSIGDTLELPYGEHT-----ISLERPWKRITMHDAVREYIPDFDFESLDPSDPNSVI-EARNAAKNAGVPKVDELPTVGDILNACFEELCEPNLIQPTFIIDYPVEVSPLAKPHRSKPGLVERFELFATGRELANSFSELTDPVDQRVRFEAQAEKKAAGDEEACDVDEEFLVALEQGMPPTGGLGIGIDRLVMLL 569
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15949.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y0_ECTSI2.970e-13691.82Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z710_9STRA1.230e-8867.89Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2U5Z7_9STRA1.190e-8765.16Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SVL9_9STRA2.490e-8765.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7FQH9_PHATC4.990e-8665.30Lysine--tRNA ligase n=3 Tax=Phaeodactylum tricornu... [more]
A0A7R9WDT7_9STRA6.740e-8665.30Lysine--tRNA ligase n=1 Tax=Pseudictyota dubia Tax... [more]
A0A1Z5JNE8_FISSO4.480e-8566.06Lysine--tRNA ligase n=2 Tax=Fistulifera solaris Ta... [more]
A0A6U3S1J3_9STRA5.600e-8566.67Lysine--tRNA ligase n=2 Tax=Ditylum brightwellii T... [more]
B8BX26_THAPS8.870e-8565.60Lysine--tRNA ligase n=1 Tax=Thalassiosira pseudona... [more]
A0A7S2GT55_9STRA1.440e-8465.75Lysine--tRNA ligase n=1 Tax=Helicotheca tamesis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15949contigL-elsbetiae_contig15949:260..3289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue1.6e-106
Seed eggNOG ortholog2880.D7G3Y0
Preferred nameMSK1
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006403,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0015931,GO:0016031,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0035927,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0051031,GO:0051179,GO:0051234,GO:0051236,GO:0055085,GO:0061458,GO:0070127,GO:0070154,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990542
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,KOG1885@2759
EC6.1.1.6
COG Functional cat.J
BiGG ReactioniMM904.YNL073W,iND750.YNL073W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons4
Model size660
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15949.4102.1prot_L-elsbetiae_contig15949.4102.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15949 290..3289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.050321-UTR-L-elsbetiae_contig15949:259..2891622815656.050321-UTR-L-elsbetiae_contig15949:259..289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15949 260..289 +
1691683018.2822576-UTR-L-elsbetiae_contig15949:259..2891691683018.2822576-UTR-L-elsbetiae_contig15949:259..289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15949 260..289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.0636952-CDS-L-elsbetiae_contig15949:289..4491622815656.0636952-CDS-L-elsbetiae_contig15949:289..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 290..449 +
1691683018.2944775-CDS-L-elsbetiae_contig15949:289..4491691683018.2944775-CDS-L-elsbetiae_contig15949:289..449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 290..449 +
1622815656.0737627-CDS-L-elsbetiae_contig15949:1159..13531622815656.0737627-CDS-L-elsbetiae_contig15949:1159..1353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 1160..1353 +
1691683018.3034377-CDS-L-elsbetiae_contig15949:1159..13531691683018.3034377-CDS-L-elsbetiae_contig15949:1159..1353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 1160..1353 +
1622815656.0853417-CDS-L-elsbetiae_contig15949:2155..23081622815656.0853417-CDS-L-elsbetiae_contig15949:2155..2308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 2156..2308 +
1691683018.3112261-CDS-L-elsbetiae_contig15949:2155..23081691683018.3112261-CDS-L-elsbetiae_contig15949:2155..2308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 2156..2308 +
1622815656.0971198-CDS-L-elsbetiae_contig15949:3166..32891622815656.0971198-CDS-L-elsbetiae_contig15949:3166..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 3167..3289 +
1691683018.3190906-CDS-L-elsbetiae_contig15949:3166..32891691683018.3190906-CDS-L-elsbetiae_contig15949:3166..3289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15949 3167..3289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15949.4102.1

>prot_L-elsbetiae_contig15949.4102.1 ID=prot_L-elsbetiae_contig15949.4102.1|Name=mRNA_L-elsbetiae_contig15949.4102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MMELTEKLVAGAAAEVLGTTTVVGGEEDGSPPDLDLKAPWRRVTMNDLVK
EKIGLDFESLDMSDPKAALATARGAALNAGVHKATGLETPGYILNECFEE
LCEADLIQPTIVMDHPIEVSPLAKPHRSKPGYTERFEVFVQGREMANAFS
ELTDPVDQRNRFELQAAKKAAGDEEACDVDEDFLDALERGMPPTAGLGIG
IDRLIMLLAG
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mRNA from alignment at L-elsbetiae_contig15949:260..3289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15949.4102.1 ID=mRNA_L-elsbetiae_contig15949.4102.1|Name=mRNA_L-elsbetiae_contig15949.4102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3030bp|location=Sequence derived from alignment at L-elsbetiae_contig15949:260..3289+ (Laminarionema elsbetiae ELsaHSoW15)
ATCATTCAGGCTTACGCCGACTACCACGACATGATGGAGCTGACGGAGAA
GCTGGTCGCCGGTGCCGCTGCCGAGGTGCTGGGCACGACTACCGTGGTGG
GTGGGGAGGAAGACGGGTCGCCCCCCGACTTGGACCTTAAGGCGCCGTGG
AGAAGGGTCACCATGAACGACCTCGTCAAGGAAAAAATAGGTGCGTACGC
AGCATGTACCGTAGGTGACACAAGATACCACACCCCCTGGATTGAATTTT
AGAGCTCCATAACTCCGTAACGAAGAAGGTGCCAGCACTAAACGACATTT
TTTCGGACAGCGCTCGACTAGATCTTTCCAACGCCACCCCATTTCGGCAC
TGACACTCTTCTTGCTGGGGAGGAATCAAGCTTTGGAAATATGTCCAGGG
GGTGTGGTATCTTGTGTCACCTACGGTACATACTGCGTACGCACTTGTGT
CGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGGTGCTGTTGTTGTTGTCT
TCCGTTTAAAACCGTTCCGATCTCTCTATCCAGCACCTCGCCAAGGAAAA
TATGGGGTGTACATACATAGGTACACACATGGGTTTGTGCGTGGGTGTGT
GTTTTTCTCTGTTCAAAGAGAAGGATGTGGTGGTTACATCTCGAGCGGGA
ATGCTTAGTATCCAATGGTACAGCAGTCGTTGTTGTTGGTGTTGGTGCTG
CTGCTGCTGCTGCTGTTGCTGCTGTTGTTGTTGCTGTTGCTTTTTGTTTA
TTTCTTCTTCACATGTATTTCCAGTGCTCGATGGGCTCCTCGTCACGAGG
ACATCTTGTCTCTGAGAGTACTAACTGAACCGTGGTCACACAGTTATTGC
TGTTGTTTCACAACGTTCGATTCACTTGTTTTTGGCGTTGTTCTCTCCAG
GGCTGGACTTCGAGTCCCTGGACATGTCCGACCCGAAGGCAGCGTTAGCC
ACGGCGAGGGGTGCGGCCCTCAACGCCGGGGTCCACAAGGCCACCGGATT
GGAAACCCCGGGGTACATCCTGAACGAGTGCTTCGAGGAGCTCTGCGAGG
CGGACCTCATCCAGCCGACGATTGTCATGGATCACCCCATCGAGGTGCAC
TTACACGCACACACTTAAACACACACACACACACACACACCCTTTTGGCC
CAACCCTCTCTCTCCCCTTGCGAAGATCCTCAACCCTGAAGTGCTGTGGT
TTTATCTCAGGGTTAGCCGACCCTCTCCCGTTGAGAAGAAGCTTAAGCTT
CGCCCCGACCCGCTGTGGTTTTGTCTCGGGGTACTCAAGCTGTAGCTTTT
CGCGTTAAAATCGCCACCATGCTTGGGAGGTGTTATGCACACATGGGGTT
ACTCCATGAGGGGTTCTCCTCCTGTTGCCGCGAGAGAGAAGATGTTTTTT
TCTTGTTCCCGCCCAACACCAACAGAGGCCGTACCGTAGGTGACACAAGA
TACCGCACCCCCTGGGCAGATTTTCAAAGCTCGATTCCTCCCCAGCAAGA
AGAGTGCTAGTGCCAAAAAGGGTAGTGCTGGAAAGATCTAATCCAGGGCT
GTCCGAAAATGTGCCGTTTGGTGCCGGCACCTTACTCGTTGCGGAGTAAT
GGAGCTCTAAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCATCTACGT
TATGTATCAGGAGTATTGAAGGAGTGGTAAAATGAGGTAACATTTTGTAC
GAGTACATCTTGGACCGGAAGAAGGGGGGTTAGTATGTTACATGGTATGC
CTACAACAGTAGTCCCTCTGGAACGACTTTTTCGCAGACTGGAGGTAGAC
TGCTGACATTTCTATACACTTATTAAAAGAGTGCCGTATAAGACACAAGA
TAACACACCAGACCCCCTGGACCGAAACTCTGGTTTTGGTTCGCAGGTGA
GTCCGCTCGCGAAGCCCCACCGCTCCAAACCCGGCTACACGGAGCGGTTC
GAGGTGTTCGTGCAGGGGAGGGAGATGGCCAACGCCTTCAGCGAGCTGAC
CGACCCGGTGGATCAGAGAAACCGTTTCGAGCTGCAGGCGGCGAAGAAGG
TGCGCAGTGAATTAATTCCAACCAATCAGCCTTTGTGTTTTTTGTGCGTG
TGTGTGTGTGTGTGCGTGTGTGTGTTTTTCTTCTTGTTTTAAGATAAAAA
ATCATCGAGCTTCAAAACGTTTTGAGAAACGAGCGCGTACATACGTAAAT
CTATTTCAGTTCAGAATTATTCTGAGCGTCGCTCCCTGTCATCGCTGTGG
TGTTGGCTCTATATCATCTGCATGCGTTGAAGTAAGTATTGGTGGGGTTA
ACTTGTCGGTGTTTTTGTGTTTAATTTGGGGGGGTAGGGAGAGGGGCGCA
CCTGTGGTGTGTGTTGCGGTTGCGGGGGTTTTGTGTTTTCGATGTTCGTG
GAGGGTTGTGTATCGCCGCCGTTTTGCGTTGTCGTTGTCGTCGGCCTTGG
TAATTTCGGATCGTTGGACTGGCTGCGAAGGTAAGAGACGTGTCGGCTGG
GAGAGCAGATAGAATGGTTGATGGGGCTTTTTTCGACCTCTCAGCGGAGA
GGGTGTGGCTGGCTGGCCGGCACTCGGGCCCTAAACAGTTGGGTAATTAA
AGCACGTATTGTTTTCAGCTCACATAGCGTGTGGAGGGGAGCGGGGGGCT
CCAGGCCCATCTGTGACCTTTTGGTTTTTGTGCTTTATGGACCCTTCGGG
TTTATTTTTTGTCTCTTCTTTTTTTCATGATGCAAAAAACAAATAAAAAA
ATAAAAATAGGGTAAGTTATCTATCCTGTGTCACCACGGGAATCGAGCGT
GTCAAGTGCTGGATTGTATGTACGGACTTATGGAGGTACTGGATCGAGAG
TTCGAAACGTTTTTTTTAATGTGAAGACCACGATGCATGGGCGCGACGAC
CCTTCAGGCTGCCGGAGACGAAGAGGCGTGCGACGTGGACGAGGACTTCC
TGGATGCTCTGGAGCGCGGCATGCCGCCTACCGCCGGTCTCGGCATCGGC
ATCGACCGCTTGATCATGCTCCTAGCCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15949:260..3289+

>mRNA_L-elsbetiae_contig15949.4102.1 ID=mRNA_L-elsbetiae_contig15949.4102.1|Name=mRNA_L-elsbetiae_contig15949.4102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig15949:260..3289+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGAGCTGACGGAGAAGCTGGTCGCCGGTGCCGCTGCCGAGGTGCT
GGGCACGACTACCGTGGTGGGTGGGGAGGAAGACGGGTCGCCCCCCGACT
TGGACCTTAAGGCGCCGTGGAGAAGGGTCACCATGAACGACCTCGTCAAG
GAAAAAATAGATGATGGAGCTGACGGAGAAGCTGGTCGCCGGTGCCGCTG
CCGAGGTGCTGGGCACGACTACCGTGGTGGGTGGGGAGGAAGACGGGTCG
CCCCCCGACTTGGACCTTAAGGCGCCGTGGAGAAGGGTCACCATGAACGA
CCTCGTCAAGGAAAAAATAGGGCTGGACTTCGAGTCCCTGGACATGTCCG
ACCCGAAGGCAGCGTTAGCCACGGCGAGGGGTGCGGCCCTCAACGCCGGG
GTCCACAAGGCCACCGGATTGGAAACCCCGGGGTACATCCTGAACGAGTG
CTTCGAGGAGCTCTGCGAGGCGGACCTCATCCAGCCGACGATTGTCATGG
ATCACCCCATCGAGGGCTGGACTTCGAGTCCCTGGACATGTCCGACCCGA
AGGCAGCGTTAGCCACGGCGAGGGGTGCGGCCCTCAACGCCGGGGTCCAC
AAGGCCACCGGATTGGAAACCCCGGGGTACATCCTGAACGAGTGCTTCGA
GGAGCTCTGCGAGGCGGACCTCATCCAGCCGACGATTGTCATGGATCACC
CCATCGAGGTGAGTCCGCTCGCGAAGCCCCACCGCTCCAAACCCGGCTAC
ACGGAGCGGTTCGAGGTGTTCGTGCAGGGGAGGGAGATGGCCAACGCCTT
CAGCGAGCTGACCGACCCGGTGGATCAGAGAAACCGTTTCGAGCTGCAGG
CGGCGAAGAAGGTGAGTCCGCTCGCGAAGCCCCACCGCTCCAAACCCGGC
TACACGGAGCGGTTCGAGGTGTTCGTGCAGGGGAGGGAGATGGCCAACGC
CTTCAGCGAGCTGACCGACCCGGTGGATCAGAGAAACCGTTTCGAGCTGC
AGGCGGCGAAGAAGGCTGCCGGAGACGAAGAGGCGTGCGACGTGGACGAG
GACTTCCTGGATGCTCTGGAGCGCGGCATGCCGCCTACCGCCGGTCTCGG
CATCGGCATCGACCGCTTGATCATGCTCCTAGCCGGTGCTGCCGGAGACG
AAGAGGCGTGCGACGTGGACGAGGACTTCCTGGATGCTCTGGAGCGCGGC
ATGCCGCCTACCGCCGGTCTCGGCATCGGCATCGACCGCTTGATCATGCT
CCTAGCCGGT
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