mRNA_L-elsbetiae_contig15911.4086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 9.640e-42 Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 1 Query: 1 MARGPRASCGRVVYCKA-AVAGGLPLCFACDRAGSRDGCSSKWNHVGDSEHWEELGEWSTEVGVRWLHKRDLQQDPLTVGECICRRPDCIARMYDVFKWNRWKQESGG-RKLEIGQPSPMGR 360 M R RASCG+VV+ K A AG L CFACDR GSRDGCS+ W HV DSE+W ELGEWS VG W H+RDL DPL GECICRR DC+ +Y +K R ++E G + IGQ SPMGR Sbjct: 1 MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.490e-34 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 1 Query: 1 MARGPRASCGRVVYCKAAVAGGLPLCFACDRAGSRDGCSSKWNHVGDSEHWEELGEWSTEVGVRWLHKRDLQQDPLTVGECICRRPDC 264 M RG SCGR V+ K A GGL LCFAC R GSRDGCSS+W HVG + +W E+GEWS VG W H+RDLQ DPL VGECIC RPDC Sbjct: 1 MTRGFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDC 88
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.760e-32 Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 1 Query: 379 QVRAFLEHVEVTGGVLDCCGSTNDAVSAVLTDRGFREATNDFDDRLVADSHMDATTNAFAEAFCVEARRPEWVVTSPPYKHAFAILKQALRVGPVGVAFKLRLTFLEPT 705 +V A L +V++ GGVLD CGS +DA+ VL +TNDF+ RL AD+H+DAT+ F F E +RP+W+VTSPPY +AF+IL +AL V VGVAFKLRL+FLEPT Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPT 122
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.940e-25 Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = -1 Query: 511 GGLKESQPQLECHSHRPNPQSLFQNSEGVFVRRARHDPLRAPSFHTEGLRESVRGGIHMAVCDQP 705 GGLK+SQPQLECH H PNPQS FQNSEGV V RARHDPLRAP F EG+ + VR GIHM VCDQP Sbjct: 178 GGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQP 242
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 2.160e-18 Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 1 Query: 244 ICRRPDCIARMY--DVFKWNRWKQESGGRKLE------IGQPSP--------MGRYPSTGSQVRAFLEHVEVTGGVLDCCGSTNDAVSAVLTDRGFREATNDFDDRLVA-----DSHMDATTNAFAEAFCVE--ARRPEWVVTSPPYKHAFAILKQALRVGPVGVAFKLRLTFLEP 702 +C RPDC+ ++Y + + N+ + + ++L G P P + RY ++ V A L VE+ G VLD CG DA++ L + TND RL D+++DA+ +FA F + +RP+WV+TSPPYK A +K AL + GVA KL L+FLEP Sbjct: 28 LCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLG-ATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEP 202
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.030e-16 Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 1 Query: 31 RVVYCKAAVAGGLPLCFACDRAGSRDGCSSKWNHVGDSEHWEELGEWSTEVGVRWLHKRD 210 R V+ K A GG LCFAC R GSRDGCSS+W HVG +W ELGEWS VG W H+RD Sbjct: 7 RAVHGKEAPGGGPGLCFACGRPGSRDGCSSRWKHVGQGTYWAELGEWSAIVGEEWPHERD 66
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.100e-16 Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = -2 Query: 531 VGSRKVSLSLNATPTGPTLKACFKIAKACL*GGLVTTHSGRRASTQKASAKAFVVASI 704 VGSRKVSLSLNATPT P LKA FKIAKACL GGLVTTHSGRR S+QK S VVASI Sbjct: 179 VGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 2.980e-10 Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 433 CGSTNDAVSAVLTDRGFREA-TNDFDDRLVADSHMDATTNAFAEAFCV--EARRPEWVVTSPPYKHAFAILKQALRVGPVGVAFKLRLTFLEP 702 CG DAV+ L R E TND AD++++A+ F E F +RPEWVVTSPPY A +K A+ + GVAFK+ + FLEP Sbjct: 2 CGGPTDAVATRL--RSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEP 92
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 63.5 bits (153), Expect = 7.020e-9 Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 376 SQVRAFLEHVEVTGGVLDCCGSTNDAVSAVLTDRGFREATNDFDDRLVADSHMD-ATTNAFAEAFCVEARRP-EWVVTSPPYKHAFAILKQALRVGPVGVAFKLRLTFLEP 702 S V L H+++TG +L+ C + A+S L + G T D +AD+ D ATT+ + + ++P +WVVT+PP+ A IL +A VGVAF LRL++LEP Sbjct: 24 SAVDTLLNHIDITGTLLEPCNGSG-AISNRLKEDGLSVITTD-----IADNPQDDATTHQYWQR-----QKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEP 123
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.040e-8 Identity = 46/154 (29.87%), Postives = 69/154 (44.81%), Query Frame = 1 Query: 280 DVFKWNRWKQESGGRKLEIGQPSPM-----------GRYPSTGSQVRAFLEHVEVTGGVLDCCGSTNDAVSAVLTDRGFREATNDFDDRLVADSHMDATTNAFAEAFCVE--ARRPEWVVTSPPYKHAFAILKQALRVGPVGVAFKLRLTFLEP 702 ++ RW+ R+ G +P+ RY ++ + V A V +TG VLD CG DAV+ +GF +++DA+ F + F + ++P+WVVTSPPYK + + AL V GVA KL L P Sbjct: 10 EISTGKRWRGRQVRRRATAGPGAPLLNLSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVA-----QGFGGTC----------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15911.4086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15911.4086.1 >prot_L-elsbetiae_contig15911.4086.1 ID=prot_L-elsbetiae_contig15911.4086.1|Name=mRNA_L-elsbetiae_contig15911.4086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp MARGPRASCGRVVYCKAAVAGGLPLCFACDRAGSRDGCSSKWNHVGDSEHback to top mRNA from alignment at L-elsbetiae_contig15911:1616..3830+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15911.4086.1 ID=mRNA_L-elsbetiae_contig15911.4086.1|Name=mRNA_L-elsbetiae_contig15911.4086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2215bp|location=Sequence derived from alignment at L-elsbetiae_contig15911:1616..3830+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15911:1616..3830+ >mRNA_L-elsbetiae_contig15911.4086.1 ID=mRNA_L-elsbetiae_contig15911.4086.1|Name=mRNA_L-elsbetiae_contig15911.4086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig15911:1616..3830+ (Laminarionema elsbetiae ELsaHSoW15)back to top |