mRNA_L-elsbetiae_contig1590.4082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1590.4082.1
Unique NamemRNA_L-elsbetiae_contig1590.4082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1590.4082.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.570e-11
Identity = 74/149 (49.66%), Postives = 84/149 (56.38%), Query Frame = -1 
Query:   10 ATRYKVCLQGGIPTLLEADEADAAXXXXXXXXXXXXXXXXXXXXXXXXXXTKEEPVSSPFRGGMIMGVPPPS-----TSPAVASXXXG---VPLFMGXXXXXXXXXXXXXXXXXXXXSADFGPQMTEAEAASIAGGSLFGYGSDMRVSV 432
            +TRY+VCLQ G+PTLLEA E               XXXXXXXXXXXXX   KEEPV SPFR  ++   PP       T+ A A    G    P   G              XXX   + + GPQMTEAEAASIAGG+LFGYGSDMRVS+
Sbjct:  927 STRYRVCLQRGVPTLLEATE------------DGEXXXXXXXXXXXXXNVAKEEPVCSPFREEVM---PPHQRQQRVTATAAAEGGRGSNGTPPPHGALMGMDGVGEAAAAXXXE--AGELGPQMTEAEAASIAGGALFGYGSDMRVSI 1058
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BLAST of mRNA_L-elsbetiae_contig1590.4082.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.130e-7
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = -1 
Query:   10 SADFGPQMTEAEAASIAGGSLFGYGSDMRVSV 105
            + + GPQMTEAEAASIAGG+LFGYGSDMRVS+
Sbjct:  904 AGELGPQMTEAEAASIAGGALFGYGSDMRVSI 935
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1590.4082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLY2_9PHAE2.570e-1149.66MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI9.130e-781.25Myb-like DNA-binding domain containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1590contigL-elsbetiae_contig1590:16356..16797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.3802848-CDS-L-elsbetiae_contig1590:16355..167961622815654.3802848-CDS-L-elsbetiae_contig1590:16355..16796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 16356..16796 +
1691683017.319132-CDS-L-elsbetiae_contig1590:16355..167961691683017.319132-CDS-L-elsbetiae_contig1590:16355..16796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1590 16356..16796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1590.4082.1prot_L-elsbetiae_contig1590.4082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1590 16356..16796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1590.4082.1

>prot_L-elsbetiae_contig1590.4082.1 ID=prot_L-elsbetiae_contig1590.4082.1|Name=mRNA_L-elsbetiae_contig1590.4082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
PRSNGHPHIAPVPEQRAPSNRSSFRLRHLGPEIRRSLGHGRRRSGRLPHP
LHPAHPHKQRHPRSSGRHRRRGRRGRNAHDHASSERGGDRLLFCRRRRRG
GGRGGRRRRPFFRSIAFRRRRCVGLIGLQESRYPPLQADLVSRRLTA
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mRNA from alignment at L-elsbetiae_contig1590:16356..16797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1590.4082.1 ID=mRNA_L-elsbetiae_contig1590.4082.1|Name=mRNA_L-elsbetiae_contig1590.4082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=442bp|location=Sequence derived from alignment at L-elsbetiae_contig1590:16356..16797+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCGCTCAAACGGACACCCTCATATCGCTCCCGTACCCGAACAGAGAGC
CCCCAGCAATCGAAGCAGCTTCCGCCTCCGTCATCTGGGGCCCGAAATCC
GCCGAAGCCTCGGCCACGGCCGCCGCCGCAGCGGCCGCCTCCCCCACCCC
CTCCATCCTGCCCATCCCCATAAACAGCGGCACCCCCGCAGCAGCGGACG
CCACCGCCGGCGAGGTAGACGGGGGCGGAACGCCCATGATCATGCCTCCT
CGGAACGGGGAGGAGACCGGCTCCTCTTTTGTCGTCGCCGTCGCAGAGGC
GGTGGCCGTGGGGGGCGGAGAAGAAGGCCCTTCTTCCGATCCATCGCCTT
CCGCCGCCGCCGCTGCGTCGGCCTCATCGGCCTCCAGGAGAGTAGGTATC
CCCCCTTGCAAGCAGACCTTGTATCTCGTCGCCTTACCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1590:16356..16797+

>mRNA_L-elsbetiae_contig1590.4082.1 ID=mRNA_L-elsbetiae_contig1590.4082.1|Name=mRNA_L-elsbetiae_contig1590.4082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig1590:16356..16797+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCGCTCAAACGGACACCCTCATATCGCTCCCGTACCCGAACAGAGAGC
CCCCAGCAATCGAAGCAGCTTCCGCCTCCGTCATCTGGGGCCCGAAATCC
GCCGAAGCCTCGGCCACGGCCGCCGCCGCAGCGGCCGCCTCCCCCACCCC
CTCCATCCTGCCCATCCCCATAAACAGCGGCACCCCCGCAGCAGCGGACG
CCACCGCCGGCGAGGTAGACGGGGGCGGAACGCCCATGATCATGCCTCCT
CGGAACGGGGAGGAGACCGGCTCCTCTTTTGTCGTCGCCGTCGCAGAGGC
GGTGGCCGTGGGGGGCGGAGAAGAAGGCCCTTCTTCCGATCCATCGCCTT
CCGCCGCCGCCGCTGCGTCGGCCTCATCGGCCTCCAGGAGAGTAGGTATC
CCCCCTTGCAAGCAGACCTTGTATCTCGTCGCCTTACCGCCCCCCGCTCA
AACGGACACCCTCATATCGCTCCCGTACCCGAACAGAGAGCCCCCAGCAA
TCGAAGCAGCTTCCGCCTCCGTCATCTGGGGCCCGAAATCCGCCGAAGCC
TCGGCCACGGCCGCCGCCGCAGCGGCCGCCTCCCCCACCCCCTCCATCCT
GCCCATCCCCATAAACAGCGGCACCCCCGCAGCAGCGGACGCCACCGCCG
GCGAGGTAGACGGGGGCGGAACGCCCATGATCATGCCTCCTCGGAACGGG
GAGGAGACCGGCTCCTCTTTTGTCGTCGCCGTCGCAGAGGCGGTGGCCGT
GGGGGGCGGAGAAGAAGGCCCTTCTTCCGATCCATCGCCTTCCGCCGCCG
CCGCTGCGTCGGCCTCATCGGCCTCCAGGAGAGTAGGTATCCCCCCTTGC
AAGCAGACCTTGTATCTCGTCGCCTTACCGCC
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