mRNA_L-elsbetiae_contig15898.4075.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15898.4075.1
Unique NamemRNA_L-elsbetiae_contig15898.4075.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15898.4075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15898contigL-elsbetiae_contig15898:853..2187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size712
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15898.4075.1prot_L-elsbetiae_contig15898.4075.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15898 1040..2187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8766882-UTR-L-elsbetiae_contig15898:852..10391622815652.8766882-UTR-L-elsbetiae_contig15898:852..1039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15898 853..1039 -
1691683016.288765-UTR-L-elsbetiae_contig15898:852..10391691683016.288765-UTR-L-elsbetiae_contig15898:852..1039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15898 853..1039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8976948-CDS-L-elsbetiae_contig15898:1039..11471622815652.8976948-CDS-L-elsbetiae_contig15898:1039..1147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 1040..1147 -
1691683016.3066094-CDS-L-elsbetiae_contig15898:1039..11471691683016.3066094-CDS-L-elsbetiae_contig15898:1039..1147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 1040..1147 -
1622815652.9094057-CDS-L-elsbetiae_contig15898:1202..15171622815652.9094057-CDS-L-elsbetiae_contig15898:1202..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 1203..1517 -
1691683016.317368-CDS-L-elsbetiae_contig15898:1202..15171691683016.317368-CDS-L-elsbetiae_contig15898:1202..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 1203..1517 -
1622815652.9240787-CDS-L-elsbetiae_contig15898:2085..21871622815652.9240787-CDS-L-elsbetiae_contig15898:2085..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 2086..2187 -
1691683016.329559-CDS-L-elsbetiae_contig15898:2085..21871691683016.329559-CDS-L-elsbetiae_contig15898:2085..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15898 2086..2187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15898.4075.1

>prot_L-elsbetiae_contig15898.4075.1 ID=prot_L-elsbetiae_contig15898.4075.1|Name=mRNA_L-elsbetiae_contig15898.4075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MDTFTSQTRRRRDGDCDSASKRQRSTRGSTQGKYATPTANLPSPTSSTGT
WPLSPSSWSSSTSASSQHATPSPPRPESAKRVRACKGASPPASNSAAAAL
SAPTALSKPTTVPMMAAARATSAVIRSASAAGAAAAAGALARRPLRCSGW
GPTARRDRLQSLPPRPARRLLPPS*
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mRNA from alignment at L-elsbetiae_contig15898:853..2187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15898.4075.1 ID=mRNA_L-elsbetiae_contig15898.4075.1|Name=mRNA_L-elsbetiae_contig15898.4075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1335bp|location=Sequence derived from alignment at L-elsbetiae_contig15898:853..2187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATACATTCACCTCTCAAACCCGACGCAGAAGAGACGGAGACTGTGA
CAGCGCGAGCAAGCGACAGAGGAGCACGAGGGGGTCAACACAGGGCAAAT
ATGTGAGAGCAACACGATTTCAAATACCTAGCAGTTCTCATGTGGTCGTC
AAGTTTGAGGATGCCCGGTCTACATATTATACTGGATGCGCCGCAGAAAA
GTTCAAAGTGCTGTGAACCCTCTTCCAACAGATAGATACTCGTGCTCCCC
TCCAAAACCCTTTGCAGGAAAACAAGCGTGTCGCCTGCGCGCAACCGGCA
TTTCCCCTAGAAAATCATCCCTTCTGACTGCTGTTGAATGTTTTTCGGCG
CGCCACGTTCTGTGCTAAGTCCTCAAAGTATATTGAGTCTACGTGCCAAA
TTTCGTAACCATCAGTCAGTTCTGTCTGTATATAACGCGTTCTCGGCACC
GGTTGATACTCACGCGGAAGTCACAGAGGTTGCCCCGCACAAAAACATGC
GCCTATTTTTTCTTCTACACCAAGCAGCCCTGCTATCTCTTTGAGTTTGC
CTCTCTCTCGTGCGCGAAACATTGGAGGCCCCATGAGTTCATCGGAATTT
CGGTATTTATGCATCATTGTTTACGGTATTGGACTCACAGATACCGCCAA
CCCACCCCTCTGTTTCTCAGGCCACTCCCACAGCAAACCTGCCCTCGCCC
ACGTCCAGTACGGGCACCTGGCCTCTATCGCCATCATCGTGGAGCTCCAG
CACCAGCGCTTCTTCTCAACATGCGACTCCGTCGCCTCCCAGGCCGGAAA
GCGCCAAGCGCGTACGCGCGTGTAAGGGAGCCTCCCCCCCTGCGTCTAAC
TCGGCGGCTGCGGCTCTTAGCGCACCGACAGCGCTCTCCAAGCCCACTAC
TGTCCCGATGATGGCAGCGGCTAGAGCCACGAGCGCGGTAATAAGGTCAG
CATCGGCAGCGGGGGCGGCGGCGGCGGCGGGGGCGGTGGCGGCGACGTTC
GCGGCGGGGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCAGCTGGCGCGGC
GGCCGCTTCGTTGCAGTGGATGGGGGCCAACAGCACGTCGAGACCGGCTT
CAATCGCTACCACCACGTCCAGCCCGTCGGTTGTTACCCCCGTCGTAGGT
GCTAACACCTCATCGGCCACCGCGAAGGGCCCAACAACGGCCACTCCTGC
GGGTGCGCGCGTGATGACGGCGACGGTAACGACTGGTCCGTCGGCATCCC
AAGCGGCGGTAGCGGCTTCCGCTTCTCAGACCCCATCGGCGACGGTAATG
CCTGGTCCGTCGGCAACGGTATCATCCGAGCGCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15898:853..2187-

>mRNA_L-elsbetiae_contig15898.4075.1 ID=mRNA_L-elsbetiae_contig15898.4075.1|Name=mRNA_L-elsbetiae_contig15898.4075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig15898:853..2187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATACATTCACCTCTCAAACCCGACGCAGAAGAGACGGAGACTGTGA
CAGCGCGAGCAAGCGACAGAGGAGCACGAGGGGGTCAACACAGGGCAAAT
ATATGGATACATTCACCTCTCAAACCCGACGCAGAAGAGACGGAGACTGT
GACAGCGCGAGCAAGCGACAGAGGAGCACGAGGGGGTCAACACAGGGCAA
ATATGCCACTCCCACAGCAAACCTGCCCTCGCCCACGTCCAGTACGGGCA
CCTGGCCTCTATCGCCATCATCGTGGAGCTCCAGCACCAGCGCTTCTTCT
CAACATGCGACTCCGTCGCCTCCCAGGCCGGAAAGCGCCAAGCGCGTACG
CGCGTGTAAGGGAGCCTCCCCCCCTGCGTCTAACTCGGCGGCTGCGGCTC
TTAGCGCACCGACAGCGCTCTCCAAGCCCACTACTGTCCCGATGATGGCA
GCGGCTAGAGCCACGAGCGCGGTAATAAGGTCAGCATCGGCAGCGGGGGC
GGCGGCGGCGGCGGGGGCGGCCACTCCCACAGCAAACCTGCCCTCGCCCA
CGTCCAGTACGGGCACCTGGCCTCTATCGCCATCATCGTGGAGCTCCAGC
ACCAGCGCTTCTTCTCAACATGCGACTCCGTCGCCTCCCAGGCCGGAAAG
CGCCAAGCGCGTACGCGCGTGTAAGGGAGCCTCCCCCCCTGCGTCTAACT
CGGCGGCTGCGGCTCTTAGCGCACCGACAGCGCTCTCCAAGCCCACTACT
GTCCCGATGATGGCAGCGGCTAGAGCCACGAGCGCGGTAATAAGGTCAGC
ATCGGCAGCGGGGGCGGCGGCGGCGGCGGGGGCGCTGGCGCGGCGGCCGC
TTCGTTGCAGTGGATGGGGGCCAACAGCACGTCGAGACCGGCTTCAATCG
CTACCACCACGTCCAGCCCGTCGGTTGTTACCCCCGTCGTAGCTGGCGCG
GCGGCCGCTTCGTTGCAGTGGATGGGGGCCAACAGCACGTCGAGACCGGC
TTCAATCGCTACCACCACGTCCAGCCCGTCGGTTGTTACCCCCGTCGTAG
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