mRNA_L-elsbetiae_contig1586.4062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1586.4062.1 vs. uniprot
Match: A0A6H5JPR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR6_9PHAE) HSP 1 Score: 373 bits (958), Expect = 1.410e-103 Identity = 204/374 (54.55%), Postives = 241/374 (64.44%), Query Frame = 1 Query: 703 GAGEEEEQEEEFSIPGLGLVHEHWHNGVCLLHRPEYWANGATGGVGEIRRLVCCWGVDVPVGMTKSQLVKQLADASKEGNLPESGCLSYSFELPAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXPEIRVEGGQGGGGVQGGGGSVARDECYKEGQIVWVHGEFAAVMDGKAVSDQ-VWCPGVVCS----------KQKGDDGGPVSPPEAGLVVDVMGQDQAEFPVTEDNIAGFPGSGEHLETVRQSVVEGLGDPPDHMCLAVAQAILACLKCGWDPRRGTNMLRPALCHNQTEGDARVKHYANAWGVEPEKLEELLKFSWVLMKPLPSRATAAGGQEATAM---AESGDGDDEWEHLRATWHKLEGMWRRVEA 1782 GAGEE + EEFS+PGL LV E WH+GVCLL RP ++G GEIRRLV CWGV+V GMTKSQL QL AS+EG LP +GCLSY++ELP AV E+ E V GGGG DECY EGQ+VWV G F A MDG+AV D VWCPGVVC+ + G G SP GLVVDVMGQ + EF V DN+ GFPG G++LE R SV GLG+PPDHMCLAVAQAILACLKCGWDP RGTN+LRPALC++Q EGDAR+ YA AWGV+P++LEELLK+SW LMKP ++ A G +A + E +G+ EW+HLRATW KLE MWR ++ Sbjct: 105 GAGEENGEGEEFSVPGLSLVEERWHDGVCLLQRPS-----SSGAEGEIRRLVRCWGVEVLPGMTKSQLSSQLKAASREGLLPLNGCLSYTYELPTLAVEAAAEAAEAAKVKA-------------EVGAEXXXXXXXV-GGGGRKFGDECYNEGQVVWVRGAFVAYMDGQAVEDDDVWCPGVVCAADNSAASSPAETNGGYGAVASP--GGLVVDVMGQSKVEFAVGTDNLTGFPGYGDNLEAFRHSVATGLGNPPDHMCLAVAQAILACLKCGWDPARGTNLLRPALCNDQREGDARLGKYAAAWGVDPDRLEELLKYSWALMKPNAQKSKRADGDQAGSREEEVEEEEGEGEWDHLRATWRKLENMWRGAKS 457
BLAST of mRNA_L-elsbetiae_contig1586.4062.1 vs. uniprot
Match: D7FJW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW9_ECTSI) HSP 1 Score: 294 bits (753), Expect = 4.810e-83 Identity = 184/314 (58.60%), Postives = 211/314 (67.20%), Query Frame = 1 Query: 889 MTKSQLVKQLADASKEGNLPESGCLSYSFELPAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXPEIRVEGGQGGGGVQGGGGSVARDECYKEGQIVWVHGEFAAVMDGKAVSDQ-VWCPGVVCS----------KQKGDDGGPVSPPEAGLVVDVMGQDQAEFPVTEDNIAGFPGSGEHLETVRQSVVEGLGDPPDHMCLAVAQAILACLKCGWDPRRGTNMLRPALCHNQTEGDARVKHYANAWGVEPEKLEELLKFSWVLMKPLPSRATAAGGQEATAMAESGDGDD-----EWEHLRATWHKLEGMWRRVEA 1782 MTKSQL QL AS+EG LP +GCLSY++ELP AV XXXXXXXXXXXXXXXXXXXXXXX GGGG D CY EGQ+VWV G F A MDG+AV D VWCPGVVC+ + G DG SP GLVVDVMGQ + EF V DN+ GFPG G++LE R SV GLG+PPDHMCLAVAQAILACLKCGWDP RGTN+ RPALC+ Q EGDAR+ YA AWGV+P++LEELLK+SW LMKP ++ A G +A + E EW+HLRATW KLE MWR ++ Sbjct: 1 MTKSQLSSQLKAASREGLLPLNGCLSYTYELPTLAVEAAXXXXXXXXXXXXXXXXXXXXXXX-------------XVGGGGHKFGDACYNEGQVVWVRGAFVAYMDGQAVEDDDVWCPGVVCAAANSAASSPAEANGGDGAVASP--GGLVVDVMGQSKVEFAVGTDNLTGFPGYGDNLEAFRHSVATGLGNPPDHMCLAVAQAILACLKCGWDPARGTNLFRPALCNEQREGDARLGKYATAWGVDPDRLEELLKYSWALMKPNAQKSKKADGDQAGSREEXXXXXXXXXXXEWDHLRATWRKLENMWRGAKS 299
BLAST of mRNA_L-elsbetiae_contig1586.4062.1 vs. uniprot
Match: D7FJW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW8_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.820e-24 Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1 Query: 1 EPCVACVRLTFLRPCGTSMTLPHRQLSPQSVLDMWREHVRQVVLDSVPESQRKQDVMLELERLQDATKLRSLACKAFE 234 EPCVA VRLTFLRPCGTS+ P R SPQSVLD+WREHVR +VL+SVPES RK +VMLEL RLQDAT LR+LAC+AFE Sbjct: 107 EPCVASVRLTFLRPCGTSV--PPR--SPQSVLDLWREHVRVIVLNSVPESNRKHEVMLELSRLQDATTLRALACQAFE 180
BLAST of mRNA_L-elsbetiae_contig1586.4062.1 vs. uniprot
Match: A0A6H5JPZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.640e-9 Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 1 EPCVACVRLTFLRPCGTSMTLPHRQLSPQSVLDMWREHVRQVVLDSVPE 147 EPCVA VRLTFLRPCGTS+ P R SPQSVLD+WREHVR +VL+SVPE Sbjct: 422 EPCVASVRLTFLRPCGTSV--PPR--SPQSVLDLWREHVRVIVLNSVPE 466 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1586.4062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1586.4062.1 >prot_L-elsbetiae_contig1586.4062.1 ID=prot_L-elsbetiae_contig1586.4062.1|Name=mRNA_L-elsbetiae_contig1586.4062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1330bp MTLPHRQLSPQSVLDMWREHVRQVVLDSVPESQRKQDVMLELERLQDATKback to top mRNA from alignment at L-elsbetiae_contig1586:12920..24522- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1586.4062.1 ID=mRNA_L-elsbetiae_contig1586.4062.1|Name=mRNA_L-elsbetiae_contig1586.4062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11603bp|location=Sequence derived from alignment at L-elsbetiae_contig1586:12920..24522- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1586:12920..24522- >mRNA_L-elsbetiae_contig1586.4062.1 ID=mRNA_L-elsbetiae_contig1586.4062.1|Name=mRNA_L-elsbetiae_contig1586.4062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7980bp|location=Sequence derived from alignment at L-elsbetiae_contig1586:12920..24522- (Laminarionema elsbetiae ELsaHSoW15)back to top |