mRNA_L-elsbetiae_contig15833.4054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15833.4054.1
Unique NamemRNA_L-elsbetiae_contig15833.4054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15833.4054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15833contigL-elsbetiae_contig15833:1108..3106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1349
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15833.4054.1prot_L-elsbetiae_contig15833.4054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15833 1476..2210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.6204295-UTR-L-elsbetiae_contig15833:1107..14751622815650.6204295-UTR-L-elsbetiae_contig15833:1107..1475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 1108..1475 -
1691683014.717283-UTR-L-elsbetiae_contig15833:1107..14751691683014.717283-UTR-L-elsbetiae_contig15833:1107..1475Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 1108..1475 -
1622815650.646287-UTR-L-elsbetiae_contig15833:2210..23731622815650.646287-UTR-L-elsbetiae_contig15833:2210..2373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 2211..2373 -
1691683014.7362719-UTR-L-elsbetiae_contig15833:2210..23731691683014.7362719-UTR-L-elsbetiae_contig15833:2210..2373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 2211..2373 -
1622815650.6563227-UTR-L-elsbetiae_contig15833:3023..31061622815650.6563227-UTR-L-elsbetiae_contig15833:3023..3106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 3024..3106 -
1691683014.7488153-UTR-L-elsbetiae_contig15833:3023..31061691683014.7488153-UTR-L-elsbetiae_contig15833:3023..3106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15833 3024..3106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.6323526-CDS-L-elsbetiae_contig15833:1475..22101622815650.6323526-CDS-L-elsbetiae_contig15833:1475..2210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15833 1476..2210 -
1691683014.727345-CDS-L-elsbetiae_contig15833:1475..22101691683014.727345-CDS-L-elsbetiae_contig15833:1475..2210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15833 1476..2210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15833.4054.1

>prot_L-elsbetiae_contig15833.4054.1 ID=prot_L-elsbetiae_contig15833.4054.1|Name=mRNA_L-elsbetiae_contig15833.4054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
MDALRDKWRRGEAPDVKAYNVCIKACGDAGQWKAALDVFREMKRVGIAAN
VNTYAAAIAACGKGGQGKLAKELLREMETMGSAPVTVRRYNAAIAACGAG
REWRLARELLEELTDKGLAPNLASYHACILACEKGRRPAEAVELLREAEE
RGLAPNYVTYNGCISACRKGGQWEMAVDLLREMGEKGLTPNAASFGAAIE
ACGRGGQAEVAVGLLTKMLRDNLKPSAATFNVVISVLRIGGPVV*
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mRNA from alignment at L-elsbetiae_contig15833:1108..3106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15833.4054.1 ID=mRNA_L-elsbetiae_contig15833.4054.1|Name=mRNA_L-elsbetiae_contig15833.4054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1999bp|location=Sequence derived from alignment at L-elsbetiae_contig15833:1108..3106- (Laminarionema elsbetiae ELsaHSoW15)
AGCTTCTCTGTCTTGCTTTGTCCACAAGGGCAGCTGTCCAAGTCTCCAAG
TTCGCCTATTGTACACAGCGACAGACAGGGAAGGTAGGTTTGTGCGAGCG
CGAGCGAGTGTTGTACGACGGGAAAACGCTAGTGTCCGTATCTGCTACTG
TTGTCGACCGGTTGTAGGGTACAGAAGTGAACCAACTCCGACATCCCGAC
CCCCAATCGCCTGCAAGTACCGTCTGTAGCTATTTGGTTTTTGCACTGCT
GGTGATTTGGAAGAACCCTCCAAAAGCATGACAATCGTTTTTGCGCGCCC
AACATGCATCCAGTTCCAATTCCAATGCACAACCTTTCGGATTACTGCAG
AACCTTGCAGGGACCTGGCTACGGCGTGCTGTTTACCACGCTAGTGAGTA
GAAGCGGAATTTGGGTGCAGGCTGTCTTATAGCGCAGTGGGTATAAGTTG
TACGTCAAATTCCAAGGCCTGTTTTCGCGAGCGATAGATCGATCGGTCAG
CCAACCGATGTATGTACGTCCCCGCCCGCCTCTCTTGCAACCACCGCTAC
GTTTGTCAAAAACACGCACACTTCACGGTCATCACGAACCCTTTCGTTTA
TATACGGGTCGTTTTCGGCGGAAGAAGAAAAAGAGATGGCTTGTCGTTCG
ACCTGCAAGGCGGCACGGGGGTTGACTCAGACGTCTTGCGTCCTTTGGCA
CACCCGACAACTTACAAAACCGCCACCCGGCAGGGTTGTCCAGGCGGAGC
AAAGATGGCTACCACCACGACCAATCCATAGATGCTGCGCGACTTTGCAG
GCCTATGGTGGAGGTAAAAGTTGGACAGATGCGCTGGAGACCGGGGGTTC
CACGAAGAGCAAACCTGCCAAGCAGAGGCAACTCGTACTGGATGCCATGG
ATGCACTTAGGGACAAGTGGCGGCGGGGTGAAGCACCAGACGTGAAAGCC
TACAACGTATGCATCAAGGCGTGCGGCGATGCGGGCCAGTGGAAGGCTGC
GTTAGATGTCTTCAGAGAGATGAAAAGAGTCGGTATAGCCGCCAACGTCA
ACACCTACGCTGCCGCTATCGCCGCGTGCGGGAAAGGAGGGCAAGGCAAG
TTGGCGAAGGAGCTGCTCAGGGAGATGGAAACAATGGGTTCAGCCCCGGT
CACGGTCAGAAGGTACAATGCCGCCATCGCAGCCTGCGGAGCGGGCAGAG
AGTGGCGGCTGGCAAGAGAGCTGCTCGAAGAGCTGACGGACAAAGGGCTA
GCGCCCAACCTCGCTTCCTATCACGCTTGCATCTTGGCGTGTGAGAAGGG
AAGAAGGCCGGCTGAAGCTGTTGAACTACTCCGAGAGGCCGAGGAGAGAG
GACTCGCCCCAAACTATGTTACCTACAACGGTTGCATCTCGGCGTGCAGG
AAGGGGGGCCAGTGGGAGATGGCTGTGGACCTTCTCAGAGAAATGGGAGA
GAAGGGTTTGACTCCTAATGCGGCCAGCTTTGGTGCAGCAATCGAGGCGT
GTGGGCGAGGAGGCCAGGCGGAGGTGGCCGTTGGGCTTCTCACAAAGATG
TTGAGAGACAATCTCAAGCCAAGTGCAGCGACGTTCAACGTGGTTATCTC
TGTATTGAGAATAGGCGGACCCGTAGTGTAACTACAGAAGCACGGATTGG
TTTAGTTTAGGGGAAACGCACCGAAGCCTTCCCTCCTGCACCCCTGGAGG
ACGACGCCGGAACTACTGTACCCCAAACTTGATGAGAAAGCGAACGGCAA
TCTTTCCCACACGTAACTTGGTGTTGTGTTTGGCCATCTCCCGGACTTAT
TGTATCTCCTGCTGTGTTTTATTCCATTGCACCCTTCCCCGATGTTGCGT
CTTGTTGAGTGTGGTTGTTGTGCATGCGTTTGCGAACTCTCAAATGTCTG
TGTGCGGCGGGTCTTTCGGTGCCTGGCTCGGTGAACGCCCTCGGCATCGT
CAGGTGGGGGAGAGCTGCTTGTTCGTTTTGGAGTCGGCGAAAAACTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15833:1108..3106-

>mRNA_L-elsbetiae_contig15833.4054.1 ID=mRNA_L-elsbetiae_contig15833.4054.1|Name=mRNA_L-elsbetiae_contig15833.4054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig15833:1108..3106- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGCACTTAGGGACAAGTGGCGGCGGGGTGAAGCACCAGACGTGAA
AGCCTACAACGTATGCATCAAGGCGTGCGGCGATGCGGGCCAGTGGAAGG
CTGCGTTAGATGTCTTCAGAGAGATGAAAAGAGTCGGTATAGCCGCCAAC
GTCAACACCTACGCTGCCGCTATCGCCGCGTGCGGGAAAGGAGGGCAAGG
CAAGTTGGCGAAGGAGCTGCTCAGGGAGATGGAAACAATGGGTTCAGCCC
CGGTCACGGTCAGAAGGTACAATGCCGCCATCGCAGCCTGCGGAGCGGGC
AGAGAGTGGCGGCTGGCAAGAGAGCTGCTCGAAGAGCTGACGGACAAAGG
GCTAGCGCCCAACCTCGCTTCCTATCACGCTTGCATCTTGGCGTGTGAGA
AGGGAAGAAGGCCGGCTGAAGCTGTTGAACTACTCCGAGAGGCCGAGGAG
AGAGGACTCGCCCCAAACTATGTTACCTACAACGGTTGCATCTCGGCGTG
CAGGAAGGGGGGCCAGTGGGAGATGGCTGTGGACCTTCTCAGAGAAATGG
GAGAGAAGGGTTTGACTCCTAATGCGGCCAGCTTTGGTGCAGCAATCGAG
GCGTGTGGGCGAGGAGGCCAGGCGGAGGTGGCCGTTGGGCTTCTCACAAA
GATGTTGAGAGACAATCTCAAGCCAAGTGCAGCGACGTTCAACGTGGTTA
TCTCTGTATTGAGAATAGGCGGACCCGTAGTGTAAATGGATGCACTTAGG
GACAAGTGGCGGCGGGGTGAAGCACCAGACGTGAAAGCCTACAACGTATG
CATCAAGGCGTGCGGCGATGCGGGCCAGTGGAAGGCTGCGTTAGATGTCT
TCAGAGAGATGAAAAGAGTCGGTATAGCCGCCAACGTCAACACCTACGCT
GCCGCTATCGCCGCGTGCGGGAAAGGAGGGCAAGGCAAGTTGGCGAAGGA
GCTGCTCAGGGAGATGGAAACAATGGGTTCAGCCCCGGTCACGGTCAGAA
GGTACAATGCCGCCATCGCAGCCTGCGGAGCGGGCAGAGAGTGGCGGCTG
GCAAGAGAGCTGCTCGAAGAGCTGACGGACAAAGGGCTAGCGCCCAACCT
CGCTTCCTATCACGCTTGCATCTTGGCGTGTGAGAAGGGAAGAAGGCCGG
CTGAAGCTGTTGAACTACTCCGAGAGGCCGAGGAGAGAGGACTCGCCCCA
AACTATGTTACCTACAACGGTTGCATCTCGGCGTGCAGGAAGGGGGGCCA
GTGGGAGATGGCTGTGGACCTTCTCAGAGAAATGGGAGAGAAGGGTTTGA
CTCCTAATGCGGCCAGCTTTGGTGCAGCAATCGAGGCGTGTGGGCGAGGA
GGCCAGGCGGAGGTGGCCGTTGGGCTTCTCACAAAGATGTTGAGAGACAA
TCTCAAGCCAAGTGCAGCGACGTTCAACGTGGTTATCTCTGTATTGAGAA
TAGGCGGACCCGTAGTGTAA
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