mRNA_L-elsbetiae_contig15823.4050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15823.4050.1
Unique NamemRNA_L-elsbetiae_contig15823.4050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15823.4050.1 vs. uniprot
Match: A0A6H5KAF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 9.070e-23
Identity = 47/80 (58.75%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:    8 QAEGCKKYRVYGFDGRPAVCCATHKKPGMVDVRSSRCEFDKCFRHPSFGYKWEKKRRFCGRHKLADMMDVRSRNQPQKAA 247
            +AEGCKKYRVYG+DG+PAVC                          SFG++WEKKRRFCGRHKL DMMDVRSRNQ QKAA
Sbjct:   48 EAEGCKKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMMDVRSRNQSQKAA 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15823.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF9_9PHAE9.070e-2358.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15823contigL-elsbetiae_contig15823:1497..2488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.1933846-CDS-L-elsbetiae_contig15823:1496..17341622815650.1933846-CDS-L-elsbetiae_contig15823:1496..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15823 1497..1734 +
1691683014.454598-CDS-L-elsbetiae_contig15823:1496..17341691683014.454598-CDS-L-elsbetiae_contig15823:1496..1734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15823 1497..1734 +
1622815650.2102814-CDS-L-elsbetiae_contig15823:2438..24881622815650.2102814-CDS-L-elsbetiae_contig15823:2438..2488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15823 2439..2488 +
1691683014.4634533-CDS-L-elsbetiae_contig15823:2438..24881691683014.4634533-CDS-L-elsbetiae_contig15823:2438..2488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15823 2439..2488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15823.4050.1prot_L-elsbetiae_contig15823.4050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15823 1497..2488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15823.4050.1

>prot_L-elsbetiae_contig15823.4050.1 ID=prot_L-elsbetiae_contig15823.4050.1|Name=mRNA_L-elsbetiae_contig15823.4050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
CRAGGGLQEVPRLRVRRQAGGVLRDAQEARHGGRPEQPLRVRQVLPPPQL
RLQVGEETQVLRQAQARRHDGRAQPQPASESGGRSGGGGGSSSPRG
back to top

mRNA from alignment at L-elsbetiae_contig15823:1497..2488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15823.4050.1 ID=mRNA_L-elsbetiae_contig15823.4050.1|Name=mRNA_L-elsbetiae_contig15823.4050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=992bp|location=Sequence derived from alignment at L-elsbetiae_contig15823:1497..2488+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGCGCAGGCGGAGGGCTGCAAGAAGTACCGCGTCTACGGGTTCGACG
GCAGGCCGGCGGTGTGCTGCGCGACGCACAAGAAGCCCGGCATGGTGGAC
GTCCGGAGCAGCCGCTGCGAGTTCGACAAGTGCTTCCGCCACCCCAGCTT
CGGCTACAAGTGGGAGAAGAAACGCAGGTTCTGCGGCAGGCACAAGCTCG
CCGACATGATGGACGTGCGCAGCCGCAACCAGCCTCAGGTGCGGTGGGTG
TTGGTGGGTAGTTTTTTATTTTATTTTCCCTCCCATTATTAGCTTATTCG
TCGTCTCTGCTCCACTGGCCCTCATACTCCACTCACGACTAGATAGACGA
CCCAACCGGGGTCACACAGGAGGGGGGGGGGATGGACCCCCTCCTACGGT
GCCTGCCTGTTATGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCATCCT
CGTCAACAATTAAGTCGAAGTATTATTTACTAACGAAATCGTTTTCGGTA
GTAGTGTGGGTGGGGGGTAATTCTTGTGCATATAGATCTAGATGCATAGA
TCCAGTCCAGCGTTGAATTATCTTCCGCTCACCCAGCCTCAGCTACATAG
GTACTGTCTGTGTGTGTAGCACACCGTTGTAGATTTGTGTCGCGATTTGT
TTCGTCTGCTCCGCTCCGCGTAGCATGTTTCTCGATATGTGTACCCGCCG
TGCATCCATACCCTGCCGGGCCCCGGCCACACCGTGTTGGTGCTGGTGCA
AAAAAGGCAATCGATATCCCCCCCGAGCATTAGCTAGCTGACGAGCGCTT
ACATTTATTTTGTCACGCCTGTCACCCGACGACGCGCTTCTCACCCTCGA
CGCGGACGCATCATCTGCACGCGCGCTACCGCCACGGCAAACACGGGGGG
TGGGGTGCGGACAACAACAAAAACCTCTTGAAAAATCGTCAGAAAGCGGC
GGCCGGAGCGGCGGCGGCGGCGGCAGCAGCAGCCCGAGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15823:1497..2488+

>mRNA_L-elsbetiae_contig15823.4050.1 ID=mRNA_L-elsbetiae_contig15823.4050.1|Name=mRNA_L-elsbetiae_contig15823.4050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig15823:1497..2488+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCGCGCAGGCGGAGGGCTGCAAGAAGTACCGCGTCTACGGGTTCGACG
GCAGGCCGGCGGTGTGCTGCGCGACGCACAAGAAGCCCGGCATGGTGGAC
GTCCGGAGCAGCCGCTGCGAGTTCGACAAGTGCTTCCGCCACCCCAGCTT
CGGCTACAAGTGGGAGAAGAAACGCAGGTTCTGCGGCAGGCACAAGCTCG
CCGACATGATGGACGTGCGCAGCCGCAACCAGCCTCAGTGCCGCGCAGGC
GGAGGGCTGCAAGAAGTACCGCGTCTACGGGTTCGACGGCAGGCCGGCGG
TGTGCTGCGCGACGCACAAGAAGCCCGGCATGGTGGACGTCCGGAGCAGC
CGCTGCGAGTTCGACAAGTGCTTCCGCCACCCCAGCTTCGGCTACAAGTG
GGAGAAGAAACGCAGGTTCTGCGGCAGGCACAAGCTCGCCGACATGATGG
ACGTGCGCAGCCGCAACCAGCCTCAGAAAGCGGCGGCCGGAGCGGCGGCG
GCGGCGGCAGCAGCAGCCCGAGGGGGAAAGCGGCGGCCGGAGCGGCGGCG
GCGGCGGCAGCAGCAGCCCGAGGGGG
back to top