mRNA_L-elsbetiae_contig15803.4043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15803.4043.1
Unique NamemRNA_L-elsbetiae_contig15803.4043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15803.4043.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.120e-28
Identity = 80/135 (59.26%), Postives = 93/135 (68.89%), Query Frame = -2 
Query:  102 RGALAVLLAGGLGTGVVAFSAVVSAPPRQRPHHQLISTNAHQQPAP--MMVPSPPLLGAACTPQTRQFLEDIISGQTAAEAXXXXXXXXXXXDRSF------GSNSTVLGLTD-WGGKAA--GGAFRLKEQPSAA 473
            +GA+ V LAGG+GT V AFSAV SAPPRQRPH +LISTN+ QQPAP  +MVPSPPL+G   +P  RQFLE II+GQ AAEA        XXX          G+N+ +LGLTD WGG A   GG FRLKE+PS A
Sbjct:   71 KGAMVVFLAGGVGTAVTAFSAVCSAPPRQRPHRELISTNSQQQPAPPPIMVPSPPLVGVN-SPHARQFLEGIIAGQEAAEAEAVAAKGKXXXXXXXXXXXXXGNNTAILGLTDYWGGMAGAGGGTFRLKEEPSLA 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15803.4043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBV0_9PHAE1.120e-2859.26RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15803contigL-elsbetiae_contig15803:1168..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.4493482-UTR-L-elsbetiae_contig15803:1167..14281622815649.4493482-UTR-L-elsbetiae_contig15803:1167..1428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15803 1168..1428 +
1691683013.9379108-UTR-L-elsbetiae_contig15803:1167..14281691683013.9379108-UTR-L-elsbetiae_contig15803:1167..1428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15803 1168..1428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.4611247-CDS-L-elsbetiae_contig15803:1428..18901622815649.4611247-CDS-L-elsbetiae_contig15803:1428..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15803 1429..1890 +
1691683013.9471343-CDS-L-elsbetiae_contig15803:1428..18901691683013.9471343-CDS-L-elsbetiae_contig15803:1428..1890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15803 1429..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15803.4043.1prot_L-elsbetiae_contig15803.4043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15803 1429..1890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15803.4043.1

>prot_L-elsbetiae_contig15803.4043.1 ID=prot_L-elsbetiae_contig15803.4043.1|Name=mRNA_L-elsbetiae_contig15803.4043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MMSSRNWRVWGVQAAPRSGGDGTIIGAGCWCALVEMSWWWGLCLGGALTT
AENATTPVPRPPARRTASAPLTTAAAPLLSLAALLLRTPPPPAQQEQLGP
RSSSILRSHDSHVCLCRLRRLVDAGRTDIGVKRILLLSSRLSSSLPPDAS
ISSS
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mRNA from alignment at L-elsbetiae_contig15803:1168..1890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15803.4043.1 ID=mRNA_L-elsbetiae_contig15803.4043.1|Name=mRNA_L-elsbetiae_contig15803.4043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=723bp|location=Sequence derived from alignment at L-elsbetiae_contig15803:1168..1890+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGTGCCGCCTCCCTTCCCCTCCCGCTCCTCCTCCTCCTTCTCCCTAGC
CGGCCGCGTGATCGACTCTCTGGGGAACGGCGCCGGGCGCGCCACCGCCG
CGGCCGCGCTTGGCTGCTCCTTCAACCGAAACGCGCCTCCCGCCGCCTTT
CCCCCCCAATCCGTGAGGCCCAGAACGGTGCTGTTGCTGCCGAAAGAGCG
GTCTTGCTGCTGATTCTGCTGCTGCTGCTGTTGCTCGGCTTCCGCAGCTG
TCTGGCCTGATATGATGTCCTCCAGAAACTGGCGCGTTTGGGGCGTGCAG
GCTGCGCCGAGGAGCGGAGGGGACGGGACCATCATCGGCGCGGGTTGCTG
GTGCGCGTTGGTCGAGATGAGCTGGTGGTGGGGTCTCTGCCTCGGCGGCG
CGCTCACGACGGCCGAGAACGCCACGACGCCCGTGCCCAGGCCGCCGGCC
AGGAGAACCGCCAGCGCCCCCCTGACGACGGCTGCGGCCCCGCTCCTCTC
CCTTGCCGCTCTGCTGCTGCGAACGCCGCCGCCGCCAGCACAGCAGGAAC
AGCTGGGGCCTCGCTCATCGTCCATTTTGAGGTCACATGATTCACATGTT
TGTCTCTGCCGTCTTCGCCGCTTGGTGGACGCGGGGAGAACCGACATCGG
GGTCAAGAGAATCCTCCTTCTGTCCTCTCGTCTCTCTTCCTCTCTTCCTC
CCGACGCGTCCATTTCGAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15803:1168..1890+

>mRNA_L-elsbetiae_contig15803.4043.1 ID=mRNA_L-elsbetiae_contig15803.4043.1|Name=mRNA_L-elsbetiae_contig15803.4043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig15803:1168..1890+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTCCTCCAGAAACTGGCGCGTTTGGGGCGTGCAGGCTGCGCCGAG
GAGCGGAGGGGACGGGACCATCATCGGCGCGGGTTGCTGGTGCGCGTTGG
TCGAGATGAGCTGGTGGTGGGGTCTCTGCCTCGGCGGCGCGCTCACGACG
GCCGAGAACGCCACGACGCCCGTGCCCAGGCCGCCGGCCAGGAGAACCGC
CAGCGCCCCCCTGACGACGGCTGCGGCCCCGCTCCTCTCCCTTGCCGCTC
TGCTGCTGCGAACGCCGCCGCCGCCAGCACAGCAGGAACAGCTGGGGCCT
CGCTCATCGTCCATTTTGAGGTCACATGATTCACATGTTTGTCTCTGCCG
TCTTCGCCGCTTGGTGGACGCGGGGAGAACCGACATCGGGGTCAAGAGAA
TCCTCCTTCTGTCCTCTCGTCTCTCTTCCTCTCTTCCTCCCGACGCGTCC
ATTTCGAGCAGCATGATGTCCTCCAGAAACTGGCGCGTTTGGGGCGTGCA
GGCTGCGCCGAGGAGCGGAGGGGACGGGACCATCATCGGCGCGGGTTGCT
GGTGCGCGTTGGTCGAGATGAGCTGGTGGTGGGGTCTCTGCCTCGGCGGC
GCGCTCACGACGGCCGAGAACGCCACGACGCCCGTGCCCAGGCCGCCGGC
CAGGAGAACCGCCAGCGCCCCCCTGACGACGGCTGCGGCCCCGCTCCTCT
CCCTTGCCGCTCTGCTGCTGCGAACGCCGCCGCCGCCAGCACAGCAGGAA
CAGCTGGGGCCTCGCTCATCGTCCATTTTGAGGTCACATGATTCACATGT
TTGTCTCTGCCGTCTTCGCCGCTTGGTGGACGCGGGGAGAACCGACATCG
GGGTCAAGAGAATCCTCCTTCTGTCCTCTCGTCTCTCTTCCTCTCTTCCT
CCCGACGCGTCCATTTCGAGCAGC
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