mRNA_L-elsbetiae_contig15792.4034.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15792.4034.1
Unique NamemRNA_L-elsbetiae_contig15792.4034.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15792.4034.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.040e-26
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:    1 GVMAYYEDGTDG----RXXXXXXXXXXVGREETALVCKLFRLSRDLTALRVHRGLVEGASVPQRPLALEIFPALQELRLEGIPLEYVEGLPTLRMQLKLLVFERAPLSSLM 321
            GVMAY++DG DG    R          VGR E ALV KLFRL+RD TALRVHRG    AS   +P+ L++FPALQELRLE +PLE+VEGL  LR+QLK L FE A L SL+
Sbjct:  322 GVMAYFDDGVDGDGRQRRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHRGTSRRASNWGQPVELQMFPALQELRLEAVPLEHVEGLFALRLQLKSLSFENAFLPSLL 432
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BLAST of mRNA_L-elsbetiae_contig15792.4034.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.910e-25
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    4 VMAYYEDGTDG----RXXXXXXXXXXVGREETALVCKLFRLSRDLTALRVHRGLVEGASVPQRPLALEIFPALQELRLEGIPLEYVEGLPTLRMQLKLLVFERAPLSSL 318
            VMAY++DG D     R          VGR E ALV KLFRL+RD TALRVHRG    AS   +P+ L++FPALQELRLE +PLE+VEGL  LR+QLK L FE A L SL
Sbjct:  221 VMAYFDDGVDDDGRQRRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHRGTYRRASNWGQPVELQMFPALQELRLEAVPLEHVEGLFALRLQLKSLTFENALLPSL 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15792.4034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI6.040e-2658.56Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE9.910e-2557.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15792contigL-elsbetiae_contig15792:500..2059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D8LMA8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size321
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15792.4034.1prot_L-elsbetiae_contig15792.4034.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15792 506..2059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.4928997-UTR-L-elsbetiae_contig15792:499..5051622815648.4928997-UTR-L-elsbetiae_contig15792:499..505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15792 500..505 +
1691683013.3088186-UTR-L-elsbetiae_contig15792:499..5051691683013.3088186-UTR-L-elsbetiae_contig15792:499..505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15792 500..505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.5059094-CDS-L-elsbetiae_contig15792:505..6451622815648.5059094-CDS-L-elsbetiae_contig15792:505..645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 506..645 +
1691683013.3208396-CDS-L-elsbetiae_contig15792:505..6451691683013.3208396-CDS-L-elsbetiae_contig15792:505..645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 506..645 +
1622815648.515314-CDS-L-elsbetiae_contig15792:957..10641622815648.515314-CDS-L-elsbetiae_contig15792:957..1064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 958..1064 +
1691683013.3307667-CDS-L-elsbetiae_contig15792:957..10641691683013.3307667-CDS-L-elsbetiae_contig15792:957..1064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 958..1064 +
1622815648.525134-CDS-L-elsbetiae_contig15792:1991..20591622815648.525134-CDS-L-elsbetiae_contig15792:1991..2059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 1992..2059 +
1691683013.3426533-CDS-L-elsbetiae_contig15792:1991..20591691683013.3426533-CDS-L-elsbetiae_contig15792:1991..2059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15792 1992..2059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15792.4034.1

>prot_L-elsbetiae_contig15792.4034.1 ID=prot_L-elsbetiae_contig15792.4034.1|Name=mRNA_L-elsbetiae_contig15792.4034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MAYYEDGTDGRRRRLLLPPPPVGREETALVCKLFRLSRDLTALRVHRGLV
EGASVPQRPLALEIFPALQELRLEGIPLEYVEGLPTLRMQLKLLVFERAP
LSSLM
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mRNA from alignment at L-elsbetiae_contig15792:500..2059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15792.4034.1 ID=mRNA_L-elsbetiae_contig15792.4034.1|Name=mRNA_L-elsbetiae_contig15792.4034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig15792:500..2059+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGATGGCCTACTACGAGGACGGCACCGACGGGCGGCGGCGCCGATT
GCTGCTGCCGCCGCCGCCGGTGGGGCGAGAGGAGACGGCCCTGGTGTGCA
AGCTGTTCCGGCTGTCGAGGGACCTGACTGCTCTGCGGGTGCACAGGTGG
GAAGTTTGCTTCGCGCGGGCGGCGTGCTCTTGCGTGGAGCAGCGGAGTTG
GGGTAAAGGGGGGCCCACCCGTGTGGGGTCACGCAGCCTGGCAAGCCACC
CCCCACCCCGGGCACATTGGTAATAGTATTCCCAGAACGGTAACCATCTG
CTGGTACATAGCAGCGTGATAAATACGGACGCCTTTGTGAAGAGAAGCGC
CAAGATGTTGCACAGGCAAATTAGTGTTCGTAGTTAAAAAAACTTCTTTC
GTCCACGAGGCAAACAATCAAATTCTACCGGTGCGCACGCCACCTTCTCT
CTTTTCAGGGGCTTGGTCGAGGGCGCGTCTGTCCCACAGCGCCCGTTGGC
ACTGGAGATATTCCCGGCGTTGCAGGAGCTACGCCTTGAAGGAATACCGC
TGGAATACGTGGAAGGTGTGTGTGTGTGTGTGTGAGAGAGAGAGACAGAG
ACAGAGGGACAGAGACAGAGACAGAGACAGACAGAGAGACAGAGAGAGAA
AGAGCCGTGACGTATTGTATCGTGCGTGGCTGTCCGCATCAGCAGCCTGC
GCAGGCAGACCAGCAAGCCTTTCGAAAAAAGCGGGTTCATTTGTGGAACC
GCCGCCGGTAGTCAAAGGGTGTCCGCTTGGAGGCCGATTTTTGCCATCTC
CGTCGGTTGCTCGTGTTCGCTCGCACATTTTGGGGCCTGGGGGGATAAGT
GTACTTGGTGGGATGATTGAAGCACACACATGGTCTAGTTGGTATCCGTG
CAACTTTCTTAAGAATCAGGTCACGGGTTCGGGCCCCGGCGAAGCGATTT
TCTTTCTCACATTCGTTCCTGGAAAACTGAAAACGATCTCGTTAATAAAT
TATACTTGGACTTCGTTGTTGACAAGGGTGGGGGAGTGCTGAACCCTGGC
AGGCACCGCAGGAGGGGGTCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGC
CCCGGGGGGGGAGCCCCCGAGCTGGGGGGGGGGGAGGGGGGCTGGGGGGG
CCGCGGCGGAAAAGGAGAAAAAGGGGAAGGGGAAAACAAATGTAATTTGA
CTACGGTATATACATAGAACACGGGAGATTTTGGGCAAAAGCAGGCGTTC
TTCGGGCCTCTTCCACTGGCAAGAATATGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCTCCCACACGTCTTCCTCCGCCCCGCCCCCGATGCAACC
CCCCCCCCCCCAGCCCCNNNNNNNNNNGCGCCGCCCCCCCCCGTCGGCGG
GGTGGGGGCGGCTTCCCTTCTGTTGGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCACTCGCGGCCGTCGAACCGCGAGCTAACAGGGCTGCCC
ACGCTGCGCATGCAGCTCAAGCTCCTGGTGTTCGAAAGAGCCCCGCTGTC
GAGCCTCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15792:500..2059+

>mRNA_L-elsbetiae_contig15792.4034.1 ID=mRNA_L-elsbetiae_contig15792.4034.1|Name=mRNA_L-elsbetiae_contig15792.4034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig15792:500..2059+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTACTACGAGGACGGCACCGACGGGCGGCGGCGCCGATTGCTGCT
GCCGCCGCCGCCGGTGGGGCGAGAGGAGACGGCCCTGGTGTGCAAGCTGT
TCCGGCTGTCGAGGGACCTGACTGCTCTGCGGGTGCACAGATGGCCTACT
ACGAGGACGGCACCGACGGGCGGCGGCGCCGATTGCTGCTGCCGCCGCCG
CCGGTGGGGCGAGAGGAGACGGCCCTGGTGTGCAAGCTGTTCCGGCTGTC
GAGGGACCTGACTGCTCTGCGGGTGCACAGGGGCTTGGTCGAGGGCGCGT
CTGTCCCACAGCGCCCGTTGGCACTGGAGATATTCCCGGCGTTGCAGGAG
CTACGCCTTGAAGGAATACCGCTGGAATACGTGGAAGGGGCTTGGTCGAG
GGCGCGTCTGTCCCACAGCGCCCGTTGGCACTGGAGATATTCCCGGCGTT
GCAGGAGCTACGCCTTGAAGGAATACCGCTGGAATACGTGGAAGGGCTGC
CCACGCTGCGCATGCAGCTCAAGCTCCTGGTGTTCGAAAGAGCCCCGCTG
TCGAGCCTCATGGGCTGCCCACGCTGCGCATGCAGCTCAAGCTCCTGGTG
TTCGAAAGAGCCCCGCTGTCGAGCCTCATG
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