mRNA_L-elsbetiae_contig15784.4029.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15784.4029.1
Unique NamemRNA_L-elsbetiae_contig15784.4029.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Match: D7FQI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.860e-29
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:   19 GWKLVEELHSIGVDDPGELATLLEEEDSSKAAADSADRFQCPASEAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG 255
            GW LVE+LHSIGV +PGELA LLEEED  + A DS DRF+CPASEA RF +PD+RDH +E+ FK+G+GFIYYQHL KAG
Sbjct:   60 GWDLVEKLHSIGVANPGELARLLEEEDPFEIAMDSPDRFRCPASEADRFSLPDIRDHVREKDFKSGEGFIYYQHLRKAG 138
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BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Match: D7G8S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.180e-29
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   19 GWKLVEELHSIGVDDPGELATLLEEEDSSKAAADSADRFQCPASEAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG 255
            GW LVE+LHSIGV +PGELA LLEEED  + A DS DRFQCPA EA RF +PD+RDH +E+ FK+G+GFIYYQHL KAG
Sbjct:   64 GWDLVEKLHSIGVANPGELARLLEEEDPFEIAVDSPDRFQCPAIEADRFSLPDIRDHHQEKYFKSGEGFIYYQHLRKAG 142
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BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.750e-27
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 LPADHTGWKLVEELHSIGVDDPGELATLLEEEDSSKAAADSADRFQCPASEAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG 255
            +P + TGW LVE LHSIG+D   +LA +L+E D  K A DS D+F+CP  EA RF +PD+RDH  E+AFKAGQGF+YYQHL KAG
Sbjct:  503 IPEELTGWDLVERLHSIGLDSRADLARVLQETDPFKVAVDSPDKFECPDREADRFSLPDIRDHDNEEAFKAGQGFLYYQHLRKAG 587
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BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Match: A0A6H5KG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG32_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.370e-23
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   19 GWKLVEELHSIGVDDPGELATLLEEEDSSKAA----ADSADRFQCPASEAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG 255
            GW LVE+LHSIGV +PGELA LLEEED  +            FQCPA+EA RF +PD+RDH +E+ FK+G+GFIYYQHL KAG
Sbjct:   38 GWDLVEKLHSIGVANPGELARLLEEEDPFEGPLLLHVIFRTWFQCPATEADRFSLPDIRDHEREKDFKSGEGFIYYQHLRKAG 120
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BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Match: A0A6H5L1N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.590e-14
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  106 KAAADSADRFQCPASEAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG 255
            + A DS D+F+CP  EA RF  PD+RDH  E+AFKAG+GFIYYQHL KAG
Sbjct:  606 QVAVDSPDKFECPDREADRFSSPDIRDHDDEEAFKAGRGFIYYQHLRKAG 655
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15784.4029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQI2_ECTSI2.860e-2970.89Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8S3_ECTSI4.180e-2970.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK39_ECTSI3.750e-2761.18WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KG32_9PHAE2.370e-2361.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N0_9PHAE6.590e-1466.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15784contigL-elsbetiae_contig15784:2433..2991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog2880.D7FQI2
Hectar predicted targeting categoryother localisation
EggNOG OGs2DC45@1,2S5JB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.1996236-CDS-L-elsbetiae_contig15784:2432..25401622815648.1996236-CDS-L-elsbetiae_contig15784:2432..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15784 2433..2540 +
1691683013.1714025-CDS-L-elsbetiae_contig15784:2432..25401691683013.1714025-CDS-L-elsbetiae_contig15784:2432..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15784 2433..2540 +
1622815648.2134151-CDS-L-elsbetiae_contig15784:2843..29901622815648.2134151-CDS-L-elsbetiae_contig15784:2843..2990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15784 2844..2990 +
1691683013.1817226-CDS-L-elsbetiae_contig15784:2843..29901691683013.1817226-CDS-L-elsbetiae_contig15784:2843..2990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15784 2844..2990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15784.4029.1prot_L-elsbetiae_contig15784.4029.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15784 2433..2990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15784.4029.1

>prot_L-elsbetiae_contig15784.4029.1 ID=prot_L-elsbetiae_contig15784.4029.1|Name=mRNA_L-elsbetiae_contig15784.4029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
LPADHTGWKLVEELHSIGVDDPGELATLLEEEDSSKAAADSADRFQCPAS
EAGRFWVPDLRDHSKEQAFKAGQGFIYYQHLHKAG
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mRNA from alignment at L-elsbetiae_contig15784:2433..2991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15784.4029.1 ID=mRNA_L-elsbetiae_contig15784.4029.1|Name=mRNA_L-elsbetiae_contig15784.4029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=559bp|location=Sequence derived from alignment at L-elsbetiae_contig15784:2433..2991+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCGGCGGACCACACCGGGTGGAAATTGGTAGAGGAATTGCACTCCAT
TGGCGTCGACGACCCGGGGGAGCTGGCGACGTTACTGGAAGAAGAGGACT
CATCCAAGGTAGGTAGACGAGTCTCTTCTTGGTCTAGGTTGTTGCACATA
TCTGCATTTGCACGGTCAGGGCGGGCTTGTCAGGCTGGTCCTCGGCAGCA
CCGAAAGCGCCTAAAGCTTAGGCGTGCCTTTTTGGGATATTGGTTCCTCT
GTGTTGTATCCAGCAGCCGTTATGCACTTGAAATTCGTCCGGAGCGGTTC
AGTGTTTTGAAGGCCGACAAACGTTGCGGTGTACCCCTGCGCGCGCCCGC
TACCTCACAAACCGTGCGTATTCGTTTCTCCGGTTATATTCTGTGTTTAT
CGTCGTTGTAGGCGGCGGCAGACTCTGCCGATAGGTTCCAGTGTCCAGCC
AGCGAGGCCGGTCGTTTCTGGGTGCCCGATCTTCGAGATCACAGCAAAGA
ACAGGCGTTCAAGGCAGGGCAGGGGTTCATCTACTATCAGCACCTCCACA
AGGCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15784:2433..2991+

>mRNA_L-elsbetiae_contig15784.4029.1 ID=mRNA_L-elsbetiae_contig15784.4029.1|Name=mRNA_L-elsbetiae_contig15784.4029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig15784:2433..2991+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCGGCGGACCACACCGGGTGGAAATTGGTAGAGGAATTGCACTCCAT
TGGCGTCGACGACCCGGGGGAGCTGGCGACGTTACTGGAAGAAGAGGACT
CATCCAAGCTGCCGGCGGACCACACCGGGTGGAAATTGGTAGAGGAATTG
CACTCCATTGGCGTCGACGACCCGGGGGAGCTGGCGACGTTACTGGAAGA
AGAGGACTCATCCAAGGCGGCGGCAGACTCTGCCGATAGGTTCCAGTGTC
CAGCCAGCGAGGCCGGTCGTTTCTGGGTGCCCGATCTTCGAGATCACAGC
AAAGAACAGGCGTTCAAGGCAGGGCAGGGGTTCATCTACTATCAGCACCT
CCACAAGGCGGGGGCGGCGGCAGACTCTGCCGATAGGTTCCAGTGTCCAG
CCAGCGAGGCCGGTCGTTTCTGGGTGCCCGATCTTCGAGATCACAGCAAA
GAACAGGCGTTCAAGGCAGGGCAGGGGTTCATCTACTATCAGCACCTCCA
CAAGGCGGGG
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