mRNA_L-elsbetiae_contig1576.4019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1576.4019.1
Unique NamemRNA_L-elsbetiae_contig1576.4019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Match: D7G1V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.620e-19
Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:    1 RVVKRQSSADISYINQAIFITGIVMFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYEEFSPRCEAAA-----VVGEDTGSRSETRSKRDRVARAELIGGAKDASSTNDAQPLMSS 339
            RV++R+ SADISY +  +F+ G+VMFL YYGYYELWEVF P   SM   + L+ LK+  EEF  R  AA      VVG+ +G                   G + A++++DAQPLMSS
Sbjct:   28 RVIRRKQSADISYAHLMVFVGGLVMFLAYYGYYELWEVFFPALLSMSFAILLLALKIRLEEFPLRPRAAVPGASVVVGDTSGD------------------GERMANTSSDAQPLMSS 127
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BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Match: A0A6H5KU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU65_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.190e-18
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:    1 RVVKRQSSADISYINQAIFITGIVMFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYEEFSPRCEAAAV-----VGEDTGSRSETRSKRDRVARAELIGGAKDASSTNDAQPLMSS 339
            RV++R+ SADISY +  +F+ G+VMFL+YYGYYELWE+F P+  SM  ++ L+  K+  EEF  R  AAA      VG+  G                   G +  ++++DAQPLMSS
Sbjct:   28 RVIRRKQSADISYTHLMVFMGGMVMFLVYYGYYELWELFFPSLISMSFVILLLAAKIRMEEFPLRPRAAAAGASVAVGDTPGD------------------GERMTNTSSDAQPLMSS 127
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BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Match: D7G1V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.520e-13
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 RVVKRQSSADISYINQAIFITGIVMFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYEEFSPRCEAAA 210
            RV  R+ +ADIS+  Q +F+TGIVMFL++YGYYELWE+F P   SM++ + L  LK+  E    R  AAA
Sbjct:   27 RVTVRKKAADISHTYQVVFVTGIVMFLVFYGYYELWELFFPALASMMLQIYLAVLKIRLERCPRRHTAAA 96
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BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Match: A0A6H5K0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.820e-9
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   10 KRQSSADISYINQAIFITGIVMFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYEEFSPR-------CEAAAVVGEDTGSRS 240
            KR+S+ DISY+ QAI++TG+   +IYY ++ LW VF P       ++ L  LK+Y+E+F+           ++ VVGE TG  S
Sbjct:   36 KRRSAEDISYMWQAIYVTGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTALKMYFEKFASGDGISEKLTPSSHVVGEGTGINS 119
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BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 9.600e-8
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   13 RQSSADISYINQAIFITGIVMFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYE 180
            R+S+ADISY+ QA++  G++  +IYY ++ LW VF P  F    ++ L GLK+YYE
Sbjct:   33 RKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYE 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1576.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1V3_ECTSI1.620e-1944.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU65_9PHAE5.190e-1841.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V2_ECTSI1.520e-1351.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Z2_9PHAE9.820e-939.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCW9_ECTSI9.600e-846.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1576contigL-elsbetiae_contig1576:12048..13630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1576.4019.1prot_L-elsbetiae_contig1576.4019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1576 12118..12387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.2899795-UTR-L-elsbetiae_contig1576:12047..121171622815647.2899795-UTR-L-elsbetiae_contig1576:12047..12117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 12048..12117 -
1691683012.5333765-UTR-L-elsbetiae_contig1576:12047..121171691683012.5333765-UTR-L-elsbetiae_contig1576:12047..12117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 12048..12117 -
1622815647.316469-UTR-L-elsbetiae_contig1576:12387..124111622815647.316469-UTR-L-elsbetiae_contig1576:12387..12411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 12388..12411 -
1691683012.5564165-UTR-L-elsbetiae_contig1576:12387..124111691683012.5564165-UTR-L-elsbetiae_contig1576:12387..12411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 12388..12411 -
1622815647.3299212-UTR-L-elsbetiae_contig1576:13582..136301622815647.3299212-UTR-L-elsbetiae_contig1576:13582..13630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 13583..13630 -
1691683012.568584-UTR-L-elsbetiae_contig1576:13582..136301691683012.568584-UTR-L-elsbetiae_contig1576:13582..13630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 13583..13630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.301815-CDS-L-elsbetiae_contig1576:12117..123871622815647.301815-CDS-L-elsbetiae_contig1576:12117..12387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 12118..12387 -
1691683012.5453775-CDS-L-elsbetiae_contig1576:12117..123871691683012.5453775-CDS-L-elsbetiae_contig1576:12117..12387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 12118..12387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1576.4019.1

>prot_L-elsbetiae_contig1576.4019.1 ID=prot_L-elsbetiae_contig1576.4019.1|Name=mRNA_L-elsbetiae_contig1576.4019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MFLIYYGYYELWEVFIPTTFSMVIMLSLVGLKVYYEEFSPRCEAAAVVGE
DTGSRSETRSKRDRVARAELIGGAKDASSTNDAQPLMSS*
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mRNA from alignment at L-elsbetiae_contig1576:12048..13630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1576.4019.1 ID=mRNA_L-elsbetiae_contig1576.4019.1|Name=mRNA_L-elsbetiae_contig1576.4019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1583bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:12048..13630- (Laminarionema elsbetiae ELsaHSoW15)
CGTGTCGTGAAGCGGCAAAGCTCTGCTGACATCAGCTACATAAATCAGGT
GTGTAGTTGGGCGTTGTGTAGGGGAACGTGCGGCCTGTGGGTACGCTGGT
TTTACCCTCTCTGGACCCAACCCAGCCGTTGTGTGTAGTCACGCTTTTGT
GTGATCGATGGCCAAAAAGACTGCGATGTGTCCACAGGTTCGGAGCTAAG
AAAACACGCCTCACGGGTAACATGAGTCTAATAAATAATCCGCCGAGTTC
TCGAGAGCCACAGCATCAGCAAACAAGCTGCTGGGCTCGAGAACATCCTA
AGCAATAAACAATGGTACCGCTTCGCAGGGTGGGGAAGAATTGCTTCGTA
TGTCCCTCGATGAATAACGCCCACATCGGGAGAGTGCTGCCATATCTACA
GGGAGCACAATACCAAAAACGAAGACGCAAAAATCTCTCCAAAAACGAAG
ACGCAGAATCTTTTGTTCTGGCGGGGTAGTGGGGATATAATCGCAGGGTG
CACGTCGACCGTTGGTCTCGCATGCTTACAGCAGTAATGCAGGGACGGAC
GGGGTTTCCTGGGTTTCACCGTCCGATTATGCGATTATGCACCTTCACGA
GGATGATACATAGTCTAGACTAGTACCAACCTGGTGGTGCTGTTATTGCG
CACACCAATTATTATGTACTCGAACTGCTATGTCGTGCGAGAGTGCTCTG
TACATCGTAGGTACGTCTCCGGATGACCAAATAGTTGCGGCCGCTTTCAG
CTCGCTGAAAACCTGCTACTTCATATGTTCATGCACTCTAAAAGACTGCT
GTGGTCAATGCACTAGACATGTATTTTAGCTCGCGGGGAAACCACCATTT
TCCCCGGCTAAAATGTGCTCTCGTAGCCTCGGTTAGTACTTTTTACCCTG
TGAGAGGGCAGGGAGCCGGGAAGCGCGGAATCTGTGCCGCCGATTCCCCC
AATGAAATCTCTAGCTAGACGCCCCAACCACACACAGAGAATCGCGCAGA
CGGATGATCCAGCCTCCCCGCTAATGCAAACAGACGTACTCCCGTCGTGA
CGTTATTTTTTTAGGCCACGATCAAGTTCACCAAGTCCACGTTGTGCGTT
CGACGCAGGGCAGGTTTTTCATGAACCCTTGCCGCTTGATTGCGGTACTT
TTTGGTATATCACCGAATGAAAACGCTTTGTTCACAAATATGTATGTTAC
ATACAATATCCATTTCTAGGCGATTTTCATCACGGGGATCGTCATGTTTC
TTATCTACTACGGATACTACGAGCTTTGGGAAGTGTTCATCCCCACGACT
TTTTCCATGGTGATCATGCTCAGCCTGGTCGGCCTCAAGGTCTACTACGA
AGAGTTCTCGCCTCGATGCGAAGCGGCGGCTGTTGTCGGGGAGGACACGG
GAAGCAGATCCGAGACAAGAAGCAAGAGAGATCGGGTCGCTCGAGCGGAG
CTGATCGGCGGCGCCAAAGATGCCAGCTCAACAAACGACGCGCAACCCCT
CATGAGCTCATAGTAGATAGCATTTCCCCTTTTTTCTGCGGCTGCTTAGT
AGCTAAGTATTCTCGTATAAGTCATGTTTCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1576:12048..13630-

>mRNA_L-elsbetiae_contig1576.4019.1 ID=mRNA_L-elsbetiae_contig1576.4019.1|Name=mRNA_L-elsbetiae_contig1576.4019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:12048..13630- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTTATCTACTACGGATACTACGAGCTTTGGGAAGTGTTCATCCC
CACGACTTTTTCCATGGTGATCATGCTCAGCCTGGTCGGCCTCAAGGTCT
ACTACGAAGAGTTCTCGCCTCGATGCGAAGCGGCGGCTGTTGTCGGGGAG
GACACGGGAAGCAGATCCGAGACAAGAAGCAAGAGAGATCGGGTCGCTCG
AGCGGAGCTGATCGGCGGCGCCAAAGATGCCAGCTCAACAAACGACGCGC
AACCCCTCATGAGCTCATAGATGTTTCTTATCTACTACGGATACTACGAG
CTTTGGGAAGTGTTCATCCCCACGACTTTTTCCATGGTGATCATGCTCAG
CCTGGTCGGCCTCAAGGTCTACTACGAAGAGTTCTCGCCTCGATGCGAAG
CGGCGGCTGTTGTCGGGGAGGACACGGGAAGCAGATCCGAGACAAGAAGC
AAGAGAGATCGGGTCGCTCGAGCGGAGCTGATCGGCGGCGCCAAAGATGC
CAGCTCAACAAACGACGCGCAACCCCTCATGAGCTCATAG
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