mRNA_L-elsbetiae_contig1574.4007.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1574.4007.1
Unique NamemRNA_L-elsbetiae_contig1574.4007.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1574.4007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1574contigL-elsbetiae_contig1574:5029..5354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size326
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.473065-UTR-L-elsbetiae_contig1574:5028..50511622815646.473065-UTR-L-elsbetiae_contig1574:5028..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1574 5029..5051 +
1691683012.0602639-UTR-L-elsbetiae_contig1574:5028..50511691683012.0602639-UTR-L-elsbetiae_contig1574:5028..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1574 5029..5051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.4903157-CDS-L-elsbetiae_contig1574:5051..53541622815646.4903157-CDS-L-elsbetiae_contig1574:5051..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1574 5052..5354 +
1691683012.0717587-CDS-L-elsbetiae_contig1574:5051..53541691683012.0717587-CDS-L-elsbetiae_contig1574:5051..5354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1574 5052..5354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1574.4007.1prot_L-elsbetiae_contig1574.4007.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1574 5052..5354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1574.4007.1

>prot_L-elsbetiae_contig1574.4007.1 ID=prot_L-elsbetiae_contig1574.4007.1|Name=mRNA_L-elsbetiae_contig1574.4007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MHLFSPPLCLICVVLILLPVDQLHETTRVLQKRTVLRMIGLRTSRSGAYP
SPLKKRLSRLSACQTQMHVHNAQRERERESTHLRTETKQTSPSRTHAHKG
R
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mRNA from alignment at L-elsbetiae_contig1574:5029..5354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1574.4007.1 ID=mRNA_L-elsbetiae_contig1574.4007.1|Name=mRNA_L-elsbetiae_contig1574.4007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig1574:5029..5354+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCACATTATCACCAACTCCATGCACTTGTTTAGCCCCCCTCTTTGC
CTGATCTGTGTGGTCCTGATATTGTTACCTGTCGACCAACTGCATGAAAC
CACCCGAGTGCTCCAAAAGAGGACTGTGCTGCGGATGATTGGCTTGCGAA
CATCAAGGAGCGGCGCCTACCCCTCCCCTCTTAAGAAGCGTTTGAGCAGA
CTCTCGGCGTGCCAGACGCAGATGCACGTACACAACGCACAGAGAGAGAG
AGAGAGAGAGAGCACTCACCTCCGAACGGAGACAAAACAAACATCACCAT
CACGCACGCACGCACACAAGGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1574:5029..5354+

>mRNA_L-elsbetiae_contig1574.4007.1 ID=mRNA_L-elsbetiae_contig1574.4007.1|Name=mRNA_L-elsbetiae_contig1574.4007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1574:5029..5354+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTTGTTTAGCCCCCCTCTTTGCCTGATCTGTGTGGTCCTGATATT
GTTACCTGTCGACCAACTGCATGAAACCACCCGAGTGCTCCAAAAGAGGA
CTGTGCTGCGGATGATTGGCTTGCGAACATCAAGGAGCGGCGCCTACCCC
TCCCCTCTTAAGAAGCGTTTGAGCAGACTCTCGGCGTGCCAGACGCAGAT
GCACGTACACAACGCACAGAGAGAGAGAGAGAGAGAGAGCACTCACCTCC
GAACGGAGACAAAACAAACATCACCATCACGCACGCACGCACACAAGGGA
AGGATGCACTTGTTTAGCCCCCCTCTTTGCCTGATCTGTGTGGTCCTGAT
ATTGTTACCTGTCGACCAACTGCATGAAACCACCCGAGTGCTCCAAAAGA
GGACTGTGCTGCGGATGATTGGCTTGCGAACATCAAGGAGCGGCGCCTAC
CCCTCCCCTCTTAAGAAGCGTTTGAGCAGACTCTCGGCGTGCCAGACGCA
GATGCACGTACACAACGCACAGAGAGAGAGAGAGAGAGAGAGCACTCACC
TCCGAACGGAGACAAAACAAACATCACCATCACGCACGCACGCACACAAG
GGAAGG
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