mRNA_L-elsbetiae_contig15731.4005.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15731.4005.1
Unique NamemRNA_L-elsbetiae_contig15731.4005.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15731.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15731contigL-elsbetiae_contig15731:1505..3690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size415
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15731.4005.1prot_L-elsbetiae_contig15731.4005.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15731 1505..3690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.3532045-CDS-L-elsbetiae_contig15731:1504..15641622815646.3532045-CDS-L-elsbetiae_contig15731:1504..1564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 1505..1564 -
1691683011.9708524-CDS-L-elsbetiae_contig15731:1504..15641691683011.9708524-CDS-L-elsbetiae_contig15731:1504..1564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 1505..1564 -
1622815646.3646076-CDS-L-elsbetiae_contig15731:1944..21211622815646.3646076-CDS-L-elsbetiae_contig15731:1944..2121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 1945..2121 -
1691683011.9848447-CDS-L-elsbetiae_contig15731:1944..21211691683011.9848447-CDS-L-elsbetiae_contig15731:1944..2121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 1945..2121 -
1622815646.374552-CDS-L-elsbetiae_contig15731:2822..29231622815646.374552-CDS-L-elsbetiae_contig15731:2822..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 2823..2923 -
1691683011.9998624-CDS-L-elsbetiae_contig15731:2822..29231691683011.9998624-CDS-L-elsbetiae_contig15731:2822..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 2823..2923 -
1622815646.384217-CDS-L-elsbetiae_contig15731:3614..36901622815646.384217-CDS-L-elsbetiae_contig15731:3614..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 3615..3690 -
1691683012.0097253-CDS-L-elsbetiae_contig15731:3614..36901691683012.0097253-CDS-L-elsbetiae_contig15731:3614..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15731 3615..3690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15731.4005.1

>prot_L-elsbetiae_contig15731.4005.1 ID=prot_L-elsbetiae_contig15731.4005.1|Name=mRNA_L-elsbetiae_contig15731.4005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
DRPDCPCCVSDLLGQECTTVDVAGEGPLSSTGVIIIVLGGAVALALCVLA
GCCYSAGKENMRTSNEKATWLHRSKLGSSHSGGEGGGGGVSSKSLANTER
SRSPRSRNTSRGGSSRTEVGNATASAAVAAGEKQGNGM
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mRNA from alignment at L-elsbetiae_contig15731:1505..3690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15731.4005.1 ID=mRNA_L-elsbetiae_contig15731.4005.1|Name=mRNA_L-elsbetiae_contig15731.4005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2186bp|location=Sequence derived from alignment at L-elsbetiae_contig15731:1505..3690- (Laminarionema elsbetiae ELsaHSoW15)
GACAGGCCGGACTGTCCGTGCTGCGTGTCGGACTTGTTGGGCCAGGAGTG
CACGACGGTCGACGTCGCTGGAGAAGGTAAGGTTTGGCCTGCTGGCTTAT
ACAACGCCGCCACCGTTCGCTTTCGAGCTACATACGTATTTACGAAGTAC
GTACATAGATGCCGTAATCATGCGGGTTATCGCACCCCCGTGTTAGCGTT
TTTCTATGGCGTATTTCTCGACAACCAGGAGGGTGCGAGCACTAACTGAT
ACCTCTCTGGAAAGCCCCCGACGAGACGTTTCGAAAACCACCCTTTTCGG
CAGTGGTACCCTCCTGGTTGTGGAGAAATACGCTATAGAAAAAAGCTAAC
ACGGAGGTGCGATAACCCGCATGATAACGGTACATGCGCACTAGGCTTGT
ACGGAGAATACCATCGCGGAACGGCCATCAATAAAGCCTGCGTGTGGGGG
GTTCGCGCACATTGTTTATTCCGCGCTTCCTACAAGTTCATACTCTCCAC
CCATGCACCCGTAATCTCGCGGAGTTGATAGTATGTTTGTTGACCATGGG
TTAGTTGTGGCTCTCCATGCTTGGTGCTGGCGCGGAGAGTGTGACCCCCC
CCTACTAGATCCGCGATCCGCAACGCGCACGTCCCAAAGCCGGTCACGCA
CACAACGCGCCCTTTCAAGCATGAGTTGCATCGGTGGAAGGAGAAACCTC
ACTTTTCGCGCGCACCCCTTTTGCCTTCCTTCCTCCCTCCCTCCCTCCCT
CTACCATTGCTCGCAAGGCCCGCTTTCGTCGACCGGCGTCATCATCATCG
TGCTTGGGGGCGCCGTGGCGTTGGCGCTCTGCGTGTTGGCAGGGTGCTGC
TACAGCGCCGGTAAAGAGGTGCGTTTGTTCGACATTTCGCCCTTCTGCGC
CACATGTTATACATACGTGGTGCGCACGCACCCCCCAGAACGTAGGAGGT
GAAAGGGAGGCAAGACACGGTCGACTCCTCCCAATAAGGCAAACTTGGTC
GCGCACTTTGTATGTCGGTGAATACCGTTCAACCGCGCTCCGCGCTCCCG
AAGCACGGGTCGGCTTTTCTCTCTCGATGTCATTCCTTGCCGAATGTTGC
GCATGGACGCTGGGTGCGGCGTTCCAGAGAGCTACACATACGTGCGGCGG
CTTACCCAGTAGGTAGTGGAAATCTGGCGGATATGCTTCGAGGGCTCGAA
CTGATCCATCCATTCCATCCATCCGTCCGTGCTGCGAATGCAGAAGTGTT
GCTTGCATGTAGTGTAGACAGTGTAGGAACAGCCACAACAAGAAGAAATT
CTGTTTCATGAGCAGGAGACGTGGTTTTCGATGGGGGGCTGCAAAAAAAT
AGAAACCTTCTCAAAAAAGAGTGTGAGCCTTGGTTTTTCGGACACTATCC
CGTCACGTTTTTGACTGAAAGTGGTCGCCCCCCTCCATCCCGGCGTCCTG
GGTCGCCTGCCTGCCTGCCTGCCTTCGGTGGCCGTTGTTCCCCCGCGTAT
GTACTTGTCTGTACCGCATATGTACTTTACGCCGCCTTTGTACAATACGT
ATTATGTATGTTGTTGCAGAATATGAGGACTAGTAATGAAAAGGCCACCT
GGCTGCACCGCAGCAAGCTCGGGTCGTCGCACTCCGGGGGAGAAGGAGGC
GGTGGCGGCGTGTCTTCCAAGTCCCTCGCGAACACCGAGCGGTCCAGGAG
CCCGCGCTCCCGAAACACGTCGCGCGGCGGCTCCAGCAGGACAGAGGTAA
TGTTGTTGTTACTGTTTTAATTATAATGTATACAAGCGTCAGCAGTCTAC
GTCCGGTCTGTGAAAATATTGTTCCAGAGGGATTTGTTGTAGGCATACTA
ACCCCCCTTTCCCCCCGTCCCAAGATATACTCGCACGTTGTTTTTGTTGC
ATTTCAATGTAGAGATATACGGCAGCTGATGAAGGAAATATATTAACACG
CCGGTCGTACGCGGTACCCCTCGCCTCGGACCGCATCTTACCTGCGGCAC
GAGTTATTCACGCCGTTTTGCTTGCTTTTTCAGCCCAACCCGCGCTGTGC
TTATCTATCTAGCCATGTATCTATCTATCTACGCCCGTAATCCTCCGTCT
CCCTGGCTGGCGCTTTCCGGGCGCAGGTGGGAAACGCGACGGCTTCGGCG
GCGGTGGCAGCAGGGGAGAAACAGGGAAACGGCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15731:1505..3690-

>mRNA_L-elsbetiae_contig15731.4005.1 ID=mRNA_L-elsbetiae_contig15731.4005.1|Name=mRNA_L-elsbetiae_contig15731.4005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig15731:1505..3690- (Laminarionema elsbetiae ELsaHSoW15)
GACAGGCCGGACTGTCCGTGCTGCGTGTCGGACTTGTTGGGCCAGGAGTG
CACGACGGTCGACGTCGCTGGAGAAGGACAGGCCGGACTGTCCGTGCTGC
GTGTCGGACTTGTTGGGCCAGGAGTGCACGACGGTCGACGTCGCTGGAGA
AGGCCCGCTTTCGTCGACCGGCGTCATCATCATCGTGCTTGGGGGCGCCG
TGGCGTTGGCGCTCTGCGTGTTGGCAGGGTGCTGCTACAGCGCCGGTAAA
GAGGCCCGCTTTCGTCGACCGGCGTCATCATCATCGTGCTTGGGGGCGCC
GTGGCGTTGGCGCTCTGCGTGTTGGCAGGGTGCTGCTACAGCGCCGGTAA
AGAGAATATGAGGACTAGTAATGAAAAGGCCACCTGGCTGCACCGCAGCA
AGCTCGGGTCGTCGCACTCCGGGGGAGAAGGAGGCGGTGGCGGCGTGTCT
TCCAAGTCCCTCGCGAACACCGAGCGGTCCAGGAGCCCGCGCTCCCGAAA
CACGTCGCGCGGCGGCTCCAGCAGGACAGAGAATATGAGGACTAGTAATG
AAAAGGCCACCTGGCTGCACCGCAGCAAGCTCGGGTCGTCGCACTCCGGG
GGAGAAGGAGGCGGTGGCGGCGTGTCTTCCAAGTCCCTCGCGAACACCGA
GCGGTCCAGGAGCCCGCGCTCCCGAAACACGTCGCGCGGCGGCTCCAGCA
GGACAGAGGTGGGAAACGCGACGGCTTCGGCGGCGGTGGCAGCAGGGGAG
AAACAGGGAAACGGCATGGTGGGAAACGCGACGGCTTCGGCGGCGGTGGC
AGCAGGGGAGAAACAGGGAAACGGCATG
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