mRNA_L-elsbetiae_contig15730.4004.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15730.4004.1
Unique NamemRNA_L-elsbetiae_contig15730.4004.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15730.4004.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.830e-27
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 MPAWLLTMQEDDGWRRTLIELAREHRQSALLRFVLKQLSDNGYHREIAAVISETDLFSVFN 183
            MPAWL  MQ+D GWRRTLIELAREHR SALLRFVLKQLSD GYHREIA+VISETDLFSVFN
Sbjct:  464 MPAWLTAMQDDTGWRRTLIELAREHRASALLRFVLKQLSDMGYHREIASVISETDLFSVFN 524
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BLAST of mRNA_L-elsbetiae_contig15730.4004.1 vs. uniprot
Match: A0A7S3YJY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJY7_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 4.220e-7
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    4 PAWLLTMQEDDGWRRTLIELAREHRQSALLRFVLKQLSDNGYHREIAAVISETDLFSVF 180
            P +L  M     WR  L+ L   H +SALL F  + LS+ G+H+EIAAV+S  D   VF
Sbjct:   56 PDFLAEMLRKKRWRHALLRLFNRHERSALLGFCARYLSEKGFHKEIAAVLSRPDDLGVF 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15730.4004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQE4_ECTSI8.830e-2788.52WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3YJY7_HETAK4.220e-744.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15730contigL-elsbetiae_contig15730:92..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LQE4
Preferred nameWAC
KEGG koko:K15181
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.3181622-CDS-L-elsbetiae_contig15730:91..2741622815646.3181622-CDS-L-elsbetiae_contig15730:91..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15730 92..274 -
1691683011.9581795-CDS-L-elsbetiae_contig15730:91..2741691683011.9581795-CDS-L-elsbetiae_contig15730:91..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15730 92..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15730.4004.1prot_L-elsbetiae_contig15730.4004.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15730 92..274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15730.4004.1

>prot_L-elsbetiae_contig15730.4004.1 ID=prot_L-elsbetiae_contig15730.4004.1|Name=mRNA_L-elsbetiae_contig15730.4004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPAWLLTMQEDDGWRRTLIELAREHRQSALLRFVLKQLSDNGYHREIAAV
ISETDLFSVFN
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mRNA from alignment at L-elsbetiae_contig15730:92..274-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15730.4004.1 ID=mRNA_L-elsbetiae_contig15730.4004.1|Name=mRNA_L-elsbetiae_contig15730.4004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig15730:92..274- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCCTGGCTCCTGACCATGCAGGAGGACGACGGCTGGAGGCGCAC
CCTGATCGAGCTGGCCAGGGAGCACCGGCAGTCCGCGCTCCTCCGCTTCG
TCCTGAAGCAGCTGAGCGACAACGGGTACCACAGGGAGATCGCCGCCGTC
ATCAGCGAGACCGACCTTTTTTCTGTTTTCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15730:92..274-

>mRNA_L-elsbetiae_contig15730.4004.1 ID=mRNA_L-elsbetiae_contig15730.4004.1|Name=mRNA_L-elsbetiae_contig15730.4004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig15730:92..274- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCCTGGCTCCTGACCATGCAGGAGGACGACGGCTGGAGGCGCAC
CCTGATCGAGCTGGCCAGGGAGCACCGGCAGTCCGCGCTCCTCCGCTTCG
TCCTGAAGCAGCTGAGCGACAACGGGTACCACAGGGAGATCGCCGCCGTC
ATCAGCGAGACCGACCTTTTTTCTGTTTTCAACATGCCGGCCTGGCTCCT
GACCATGCAGGAGGACGACGGCTGGAGGCGCACCCTGATCGAGCTGGCCA
GGGAGCACCGGCAGTCCGCGCTCCTCCGCTTCGTCCTGAAGCAGCTGAGC
GACAACGGGTACCACAGGGAGATCGCCGCCGTCATCAGCGAGACCGACCT
TTTTTCTGTTTTCAAC
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