mRNA_L-elsbetiae_contig1573.4003.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1573.4003.1
Unique NamemRNA_L-elsbetiae_contig1573.4003.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1573.4003.1 vs. uniprot
Match: D8LJL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJL2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.780e-57
Identity = 133/215 (61.86%), Postives = 144/215 (66.98%), Query Frame = 1 
Query:  409 RGRVTSGAGTGAMRPAPKGAVGIGPPERHPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRAAEVGTALRPAGAAPAAAAPVAKFDLAGFVKMLGGGLIVTKINRQGRAKVRTLFYDRRDGMLWWNERG-GRLYRSKGSGSLLSLGKEQPLPVASLVKVRMADELHEPFCFDEDVDKSFQLVFPTRTVDLVAKDAEEASLLARGFQELQASVSA 1050
            RGR +SGAG  AMRPAPKGAVG+G        XXXX                       G R A V        AAPA A P   FDLAGF + LGGGLIVTKINRQGRAKVR LFYDR++ MLWWNE G G  +RS    SLLS+ KEQPL VASL+KV MAD+L EPFCFD DVDKSFQLVFP RTVDLVAKDAEEA+LLARGFQEL+ S  A
Sbjct:  154 RGRNSSGAGVEAMRPAPKGAVGMGKVGAXXXXXXXXGAGSRSQGGPSEYNSRNGSQSSSGSRPAAVA-------AAPAPAEPA--FDLAGFEEKLGGGLIVTKINRQGRAKVRALFYDRQERMLWWNEPGRGSPHRS----SLLSIKKEQPLAVASLIKVEMADQLDEPFCFDGDVDKSFQLVFPARTVDLVAKDAEEAALLARGFQELKMSACA 355
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1573.4003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJL2_ECTSI3.780e-5761.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1573contigL-elsbetiae_contig1573:18516..22036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-17_002420.1
Exons3
Model size2218
Cds size1017
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1573.4003.1prot_L-elsbetiae_contig1573.4003.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1573 18555..20874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.222314-UTR-L-elsbetiae_contig1573:18515..185541622815646.222314-UTR-L-elsbetiae_contig1573:18515..18554Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1573 18516..18554 +
1691683011.9114985-UTR-L-elsbetiae_contig1573:18515..185541691683011.9114985-UTR-L-elsbetiae_contig1573:18515..18554Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1573 18516..18554 +
1622815646.2815583-UTR-L-elsbetiae_contig1573:20874..220361622815646.2815583-UTR-L-elsbetiae_contig1573:20874..22036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1573 20875..22036 +
1691683011.9487073-UTR-L-elsbetiae_contig1573:20874..220361691683011.9487073-UTR-L-elsbetiae_contig1573:20874..22036Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1573 20875..22036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.2359445-CDS-L-elsbetiae_contig1573:18554..193971622815646.2359445-CDS-L-elsbetiae_contig1573:18554..19397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 18555..19397 +
1691683011.923056-CDS-L-elsbetiae_contig1573:18554..193971691683011.923056-CDS-L-elsbetiae_contig1573:18554..19397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 18555..19397 +
1622815646.2546146-CDS-L-elsbetiae_contig1573:20155..202991622815646.2546146-CDS-L-elsbetiae_contig1573:20155..20299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 20156..20299 +
1691683011.931104-CDS-L-elsbetiae_contig1573:20155..202991691683011.931104-CDS-L-elsbetiae_contig1573:20155..20299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 20156..20299 +
1622815646.2689629-CDS-L-elsbetiae_contig1573:20844..208741622815646.2689629-CDS-L-elsbetiae_contig1573:20844..20874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 20845..20874 +
1691683011.9393718-CDS-L-elsbetiae_contig1573:20844..208741691683011.9393718-CDS-L-elsbetiae_contig1573:20844..20874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1573 20845..20874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1573.4003.1

>prot_L-elsbetiae_contig1573.4003.1 ID=prot_L-elsbetiae_contig1573.4003.1|Name=mRNA_L-elsbetiae_contig1573.4003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
MADSNSATQKAAFASAPADHGGRHDERQRREKEEPEHHIEPMSMKPLTRG
SSGGGSTKPLSRGSSSGSGSNSSSSRRANSKSSSRTTASSSSSSSAPSAS
AGNASGGGKTGSGGGSSSSSSNSRGRVTSGAGTGAMRPAPKGAVGIGPPE
RHPAAGGGGDRSAGTTTTTHTSSRGSPYSSSSGGRAAEVGTALRPAGAAP
AAAAPVAKFDLAGFVKMLGGGLIVTKINRQGRAKVRTLFYDRRDGMLWWN
ERGGRLYRSKGSGSLLSLGKEQPLPVASLVKVRMADELHEPFCFDEDVDK
SFQLVFPTRTVDLVAKDAEEASLLARGFQELQASVSAG*
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mRNA from alignment at L-elsbetiae_contig1573:18516..22036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1573.4003.1 ID=mRNA_L-elsbetiae_contig1573.4003.1|Name=mRNA_L-elsbetiae_contig1573.4003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3521bp|location=Sequence derived from alignment at L-elsbetiae_contig1573:18516..22036+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCAGGCGGTCTCCCGAGCCGCGTTGGAAGCAGAACGGATGGCCGACAG
CAATAGCGCCACCCAGAAGGCCGCTTTCGCCTCAGCCCCGGCCGATCACG
GCGGCCGGCACGACGAGCGGCAACGGCGAGAAAAAGAAGAGCCAGAACAC
CATATCGAACCGATGTCGATGAAGCCGCTCACACGGGGCTCGAGCGGCGG
CGGATCGACGAAGCCGCTCTCACGAGGCTCAAGCAGCGGCAGCGGCAGCA
ACAGCAGCAGCAGCAGAAGAGCAAATAGTAAGTCATCGTCGCGGACGACG
GCGTCGTCGTCGTCGTCGTCATCCGCGCCATCGGCGTCGGCAGGCAATGC
CTCCGGTGGCGGCAAGACCGGCAGCGGCGGCGGCAGCAGCAGCAGCAGCA
GCAATTCTCGCGGCCGCGTCACGAGCGGGGCGGGCACGGGAGCGATGCGG
CCGGCGCCGAAGGGGGCCGTGGGGATTGGTCCGCCGGAGCGGCATCCTGC
GGCGGGTGGGGGGGGGGATAGGTCCGCCGGGACGACCACGACGACTCACA
CCTCGAGCCGAGGTTCTCCATACTCCTCTTCTTCCGGCGGCCGGGCGGCG
GAGGTGGGGACGGCGCTGCGACCGGCCGGCGCCGCCCCCGCCGCCGCCGC
CCCCGTCGCCAAGTTCGACCTCGCGGGTTTCGTGAAGATGCTGGGAGGCG
GTCTGATCGTGACGAAGATAAACCGCCAGGGCCGCGCCAAGGTGCGCACC
CTGTTCTACGACCGGAGGGACGGGATGCTCTGGTGGAACGAGCGCGGCGG
CCGGCTGTACCGCAGCAAGGGGTCCGGGTCGCTGCTTTCCCTCGGGAAGG
AGCAGCCGCTCCCGGTGGCGTCGCTCGTCAAGGTAAACATATAAACAAGG
AGGCGTGATGGGTTGTAGTAGTCTGATTTGTGCATGTGCGTAAGTGTGTG
TGCGTGTGTGTGTGAGAGTTGTGTGTGTGTGTTGTGTGTGTGTGTATTTG
TGTGCACGTGCGTGCGTGAGTGCGTGTATTTTGTGTTCGTATTTGTGTGT
GTATTTGCGCGTTTTCTTTTTTGCCATCGACCGCGCTAGCTGTGGCTGTA
GCCGGTTGACCGTTGAGAAGGCAAAACGCGTCACCACGCTAGTAAGGGCG
GGCCCATTGGTCGATAAGGGTGCTTCGCAGTGACTCAGCTGAAGGGCATG
CATTCTTTGTTAAGGTGTGTGTATGTGTGTGTTCGTGTTTGTGTCTTTTA
TTTCAGTTTTTGGCAGGAGATTTTGGCGCCGCGGTGATTCTCTCTAGAAT
AGCACCTCTAGAGTTACGCATTTTTCAAGACCAAAGTGATCAACTCAAGG
GGTTTCGGGGGGTAACGCAACCAGGAACAGGCTTTATACCCTATCCTGTC
CTACGCCCTCCTCATCGTTTTTGTTTTGTACGGGTGGGTATGTATGAAAT
GCAGTTGTGTACCGCGGCAGCCCATGGCCTGTGCTGGGCGATGAGTACAT
CCACAAACTCTCTCTGCCCCCCCCCCCCCCCCCCCCACCCAATCGCCTGC
GCCCCCGCCCCCCTCCGGTGTAAAATCCACGTCAAACGACCGAACGAACG
GACCGCGAACTGCATCAAAACAAAAACAAAAACACCGCAGGTGAGGATGG
CCGACGAGTTGCACGAGCCGTTCTGCTTCGACGAGGACGTGGACAAAAGC
TTTCAGCTCGTCTTCCCGACAAGAACGGTAGACCTGGTCGCCAAGGACGC
CGAGGAGGCTTCGCTTCTCGCGAGAGGCTTCCAGGTGTGTGGTTGTTCTC
GTGTATGTGTGTTTTGGGGACTCGCTCACTCACACTTCAGCGAGGCGGGG
GGCGAAAGCCGCTGAAAACCTTGTATTGTATGATTCAAGGGTCTGTCGGC
AGAAAAGTTCAGGACACGGAAGTAGGCCCCAAGATCAAAATTTTGAGGTT
TTGGGGGTGGGTAGGGTGGGTGTTGTCGGGGGGGGCATCGTAGTCCATAC
ACTTTCTGTGGGGGCCCCGTAAATGAAAACCGAATACTAATACTTGCATT
CAAAACGTTCTACGCCAGCCACTCTTGTCACATTTTGTTTTCGCATATGT
ACAATAGAAGTGGCTGCTGAAAATTCTCAGCCACTCTTTAGTCACTTTTG
TTTATTTTTGCAAACATTGTACTTACGTCGACGCTTAAAATTATTTACAT
TTCAAACCTTAAAATTATTTTGTGTGCATTTTTTTCTTAACATCCTCCCG
CCCCCCCCCCCCGTTATTCGGCGGCCCGTTGTCTTCTACTGCTGTCTTCC
CATCACTGCTACGCTGTGTGTGCCCCCAGGAGCTCCAGGCTTCGGTGTCG
GCCGGGTGATGTGGGTTAGGTGACGTGTTATCAATATGTAGCCGTCCGCT
GTGGATTGTTTCTCAACACTCTTGGGGCGAGAAAGGTTAACAGAACATTC
CATTTTTGAGGCGGGGCGGGCGCGATTGGGGCCCGATGAGTGCGAAGACT
TTCGGGTTGGCGCGGGGTGTGGTGCGGGGGTTTTAGGGCAGGCAGCCGGG
TCACTCTTCAAAGGAGTGTGCGTGTTATTTGCCGACTCAGCTATGTGTAC
TTCAACATAACAAACCTTTAGACGTTTCAAAACAGTTTTTTTGTCTTTAT
TTTCATATGTCGCATTTTGTTTTTTTTCGCGGTACATAGAGTGAGTATTT
AGCGACCTTTCGAGATTGGTTGCTCAGGTTAAGAGGACAGAGGAGCACAC
CCGCGGGTGAAGATAGGGAGACAAGGAGAAAAGGAGCAAAAACTACATAT
GTGAAATAGGCAAAGAGGGTTGTTTGAGGGGGTTGGCTGGTTGGCGTTTT
TTATTTTTTACAAGGTGGGGACGGCGCGAACAGAGTACAGAGTAGTAGAT
AACACACAGCCCGAAGAAGAAACAGTAGTGGCGGCGTCTTGCAGTTGGGG
CGGCGGCGGCGTGTGGGCCGGAATACAACAGTTTTCGGTCTTCTGTTTTA
CTGTCTTGTTTTGGGGTTGGGGTTTTTGGAGGCTGTGGTGGTGGTGGTTG
TCGTGGTCGTGGTGGGAACGGTTGGGTCGGAGTTTTCCGCGTGGTCAGGT
GCGGGGCGACCAACTCCACTCTCTCTGTTCGCGGCGAACGCACGCTCTCG
GTTTTGTTTCGTGTCTGGTGTTTGTTGTCTTTTAGAGCGAGGCGTGGCCG
CGTGGCCGCGTTTCGTGCCCGTCTCTTTGCTGCCTGCCGCCGTCAGCAGC
CGACGGTGCTGGATGAAAGCGATACGCACCGTAAGTTATATACGAAGGTC
AACTGCCGAGAGAGCCCCGCGCGTGGACCTCTCTCCTCTTCGAGTGTATT
GTGTGTTTTTGTACGGGTTCGGCTTGTACTTGGGGTATTCTTGTTCCCCC
TGGATTTTACCTTCTCGCATGTACGTTAAGAGGAACTTTTTCTATATTTT
TGTGTCTTTGAATAATAAATATACCGTGGTCCTCCTGCCCACGCCGCAGA
GGAGACGAAAGAGTGAGGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1573:18516..22036+

>mRNA_L-elsbetiae_contig1573.4003.1 ID=mRNA_L-elsbetiae_contig1573.4003.1|Name=mRNA_L-elsbetiae_contig1573.4003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig1573:18516..22036+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGACAGCAATAGCGCCACCCAGAAGGCCGCTTTCGCCTCAGCCCC
GGCCGATCACGGCGGCCGGCACGACGAGCGGCAACGGCGAGAAAAAGAAG
AGCCAGAACACCATATCGAACCGATGTCGATGAAGCCGCTCACACGGGGC
TCGAGCGGCGGCGGATCGACGAAGCCGCTCTCACGAGGCTCAAGCAGCGG
CAGCGGCAGCAACAGCAGCAGCAGCAGAAGAGCAAATAGTAAGTCATCGT
CGCGGACGACGGCGTCGTCGTCGTCGTCGTCATCCGCGCCATCGGCGTCG
GCAGGCAATGCCTCCGGTGGCGGCAAGACCGGCAGCGGCGGCGGCAGCAG
CAGCAGCAGCAGCAATTCTCGCGGCCGCGTCACGAGCGGGGCGGGCACGG
GAGCGATGCGGCCGGCGCCGAAGGGGGCCGTGGGGATTGGTCCGCCGGAG
CGGCATCCTGCGGCGGGTGGGGGGGGGGATAGGTCCGCCGGGACGACCAC
GACGACTCACACCTCGAGCCGAGGTTCTCCATACTCCTCTTCTTCCGGCG
GCCGGGCGGCGGAGGTGGGGACGGCGCTGCGACCGGCCGGCGCCGCCCCC
GCCGCCGCCGCCCCCGTCGCCAAGTTCGACCTCGCGGGTTTCGTGAAGAT
GCTGGGAGGCGGTCTGATCGTGACGAAGATAAACCGCCAGGGCCGCGCCA
AGGTGCGCACCCTGTTCTACGACCGGAGGGACGGGATGCTCTGGTGGAAC
GAGCGCGGCGGCCGGCTGTACCGCAGCAAGGGGTCCGGGTCGCTGCTTTC
CCTCGGGAAGGAGCAGCCGCTCCCGGTGGCGTCGCTCGTCAAGATGGCCG
ACAGCAATAGCGCCACCCAGAAGGCCGCTTTCGCCTCAGCCCCGGCCGAT
CACGGCGGCCGGCACGACGAGCGGCAACGGCGAGAAAAAGAAGAGCCAGA
ACACCATATCGAACCGATGTCGATGAAGCCGCTCACACGGGGCTCGAGCG
GCGGCGGATCGACGAAGCCGCTCTCACGAGGCTCAAGCAGCGGCAGCGGC
AGCAACAGCAGCAGCAGCAGAAGAGCAAATAGTAAGTCATCGTCGCGGAC
GACGGCGTCGTCGTCGTCGTCGTCATCCGCGCCATCGGCGTCGGCAGGCA
ATGCCTCCGGTGGCGGCAAGACCGGCAGCGGCGGCGGCAGCAGCAGCAGC
AGCAGCAATTCTCGCGGCCGCGTCACGAGCGGGGCGGGCACGGGAGCGAT
GCGGCCGGCGCCGAAGGGGGCCGTGGGGATTGGTCCGCCGGAGCGGCATC
CTGCGGCGGGTGGGGGGGGGGATAGGTCCGCCGGGACGACCACGACGACT
CACACCTCGAGCCGAGGTTCTCCATACTCCTCTTCTTCCGGCGGCCGGGC
GGCGGAGGTGGGGACGGCGCTGCGACCGGCCGGCGCCGCCCCCGCCGCCG
CCGCCCCCGTCGCCAAGTTCGACCTCGCGGGTTTCGTGAAGATGCTGGGA
GGCGGTCTGATCGTGACGAAGATAAACCGCCAGGGCCGCGCCAAGGTGCG
CACCCTGTTCTACGACCGGAGGGACGGGATGCTCTGGTGGAACGAGCGCG
GCGGCCGGCTGTACCGCAGCAAGGGGTCCGGGTCGCTGCTTTCCCTCGGG
AAGGAGCAGCCGCTCCCGGTGGCGTCGCTCGTCAAGGTGAGGATGGCCGA
CGAGTTGCACGAGCCGTTCTGCTTCGACGAGGACGTGGACAAAAGCTTTC
AGCTCGTCTTCCCGACAAGAACGGTAGACCTGGTCGCCAAGGACGCCGAG
GAGGCTTCGCTTCTCGCGAGAGGCTTCCAGGTGAGGATGGCCGACGAGTT
GCACGAGCCGTTCTGCTTCGACGAGGACGTGGACAAAAGCTTTCAGCTCG
TCTTCCCGACAAGAACGGTAGACCTGGTCGCCAAGGACGCCGAGGAGGCT
TCGCTTCTCGCGAGAGGCTTCCAGGAGCTCCAGGCTTCGGTGTCGGCCGG
GTGAGAGCTCCAGGCTTCGGTGTCGGCCGGGTGA
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