mRNA_L-elsbetiae_contig15728.4002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15728.4002.1
Unique NamemRNA_L-elsbetiae_contig15728.4002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15728.4002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15728contigL-elsbetiae_contig15728:1672..2307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.165661-CDS-L-elsbetiae_contig15728:1671..20161622815646.165661-CDS-L-elsbetiae_contig15728:1671..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15728 1672..2016 +
1691683011.8922815-CDS-L-elsbetiae_contig15728:1671..20161691683011.8922815-CDS-L-elsbetiae_contig15728:1671..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15728 1672..2016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.181642-UTR-L-elsbetiae_contig15728:2016..23071622815646.181642-UTR-L-elsbetiae_contig15728:2016..2307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15728 2017..2307 +
1691683011.9016147-UTR-L-elsbetiae_contig15728:2016..23071691683011.9016147-UTR-L-elsbetiae_contig15728:2016..2307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15728 2017..2307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15728.4002.1prot_L-elsbetiae_contig15728.4002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15728 1672..2016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15728.4002.1

>prot_L-elsbetiae_contig15728.4002.1 ID=prot_L-elsbetiae_contig15728.4002.1|Name=mRNA_L-elsbetiae_contig15728.4002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
TSSRPTAFLLASKSTANWCVPCRSCDAPATLATLGKGRGTRPLLQTERIH
TYIGTNMLPWPSCTKFLGDQASTALRPWYSFRQRTVHEKIHNTSWPEQAP
RRVASIRGQAGGEV*
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mRNA from alignment at L-elsbetiae_contig15728:1672..2307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15728.4002.1 ID=mRNA_L-elsbetiae_contig15728.4002.1|Name=mRNA_L-elsbetiae_contig15728.4002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig15728:1672..2307+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCCTCGCGACCGACTGCTTTTTTACTCGCGTCCAAAAGTACTGCCAA
CTGGTGCGTCCCTTGTCGTTCATGCGACGCCCCCGCCACATTGGCTACAC
TCGGGAAAGGGAGAGGGACACGTCCGTTGCTGCAGACAGAGCGCATACAT
ACATACATAGGTACGAATATGCTGCCATGGCCGTCTTGCACAAAATTTCT
GGGTGACCAGGCGAGCACTGCTCTTCGGCCGTGGTATTCCTTCCGACAAC
GCACCGTACATGAGAAAATACACAATACCTCGTGGCCCGAGCAAGCACCC
CGTCGAGTTGCTTCCATTCGCGGACAAGCGGGTGGTGAGGTTTGAGGATT
GGGAGCTAGCATACATGCGGGTTGTCGGAGAGCATAAAAAAAACGCGGCC
CGGAAACGTGCAACTGTTGTACACATACATGTACATACAAGCCGCGATGA
AACAAAATGGCAGGTAGAGACAACAGTCCGAGGAAGAAAAAGAACCAAGA
ACTTTTAATGCCAAACTGATGTTTCCAGATGAGCGCTACCCTCTGGGGCA
GCAGTACCACGACACGAACGGTTCGAGAAGCTAGAAAGAAGCCCTCTTTT
TTTTTGTTCACCCCCATCCCCAAGCCCCCAAGACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15728:1672..2307+

>mRNA_L-elsbetiae_contig15728.4002.1 ID=mRNA_L-elsbetiae_contig15728.4002.1|Name=mRNA_L-elsbetiae_contig15728.4002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig15728:1672..2307+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCCTCGCGACCGACTGCTTTTTTACTCGCGTCCAAAAGTACTGCCAA
CTGGTGCGTCCCTTGTCGTTCATGCGACGCCCCCGCCACATTGGCTACAC
TCGGGAAAGGGAGAGGGACACGTCCGTTGCTGCAGACAGAGCGCATACAT
ACATACATAGGTACGAATATGCTGCCATGGCCGTCTTGCACAAAATTTCT
GGGTGACCAGGCGAGCACTGCTCTTCGGCCGTGGTATTCCTTCCGACAAC
GCACCGTACATGAGAAAATACACAATACCTCGTGGCCCGAGCAAGCACCC
CGTCGAGTTGCTTCCATTCGCGGACAAGCGGGTGGTGAGGTTTGAACCTC
CTCGCGACCGACTGCTTTTTTACTCGCGTCCAAAAGTACTGCCAACTGGT
GCGTCCCTTGTCGTTCATGCGACGCCCCCGCCACATTGGCTACACTCGGG
AAAGGGAGAGGGACACGTCCGTTGCTGCAGACAGAGCGCATACATACATA
CATAGGTACGAATATGCTGCCATGGCCGTCTTGCACAAAATTTCTGGGTG
ACCAGGCGAGCACTGCTCTTCGGCCGTGGTATTCCTTCCGACAACGCACC
GTACATGAGAAAATACACAATACCTCGTGGCCCGAGCAAGCACCCCGTCG
AGTTGCTTCCATTCGCGGACAAGCGGGTGGTGAGGTTTGA
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