mRNA_L-elsbetiae_contig1570.3986.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1570.3986.1
Unique NamemRNA_L-elsbetiae_contig1570.3986.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1570.3986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1570contigL-elsbetiae_contig1570:21258..22430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size765
Cds size765
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.690385-CDS-L-elsbetiae_contig1570:21257..216731622815644.690385-CDS-L-elsbetiae_contig1570:21257..21673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1570 21258..21673 +
1691683010.9256635-CDS-L-elsbetiae_contig1570:21257..216731691683010.9256635-CDS-L-elsbetiae_contig1570:21257..21673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1570 21258..21673 +
1622815644.7004318-CDS-L-elsbetiae_contig1570:22081..224301622815644.7004318-CDS-L-elsbetiae_contig1570:22081..22430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1570 22082..22430 +
1691683010.9357824-CDS-L-elsbetiae_contig1570:22081..224301691683010.9357824-CDS-L-elsbetiae_contig1570:22081..22430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1570 22082..22430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1570.3986.1prot_L-elsbetiae_contig1570.3986.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1570 21258..22430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1570.3986.1

>prot_L-elsbetiae_contig1570.3986.1 ID=prot_L-elsbetiae_contig1570.3986.1|Name=mRNA_L-elsbetiae_contig1570.3986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MFYDSSHISDKCPQVRLYLFPTDISPRNQLHAPTCSYSIFFLPPPAIIMS
SLTAAQKAYLANMPDREQAKLKELGDMKTKEVLKQLIGDDSVSEKTAASA
PKKRKKEHETLAAWDITGQHDGCIVCGKSDMKQSQHSLLCPNPCNLWVSQ
TNTEGDPLPCGTCRQDMAGKVAYWGRTDDEGDKVYCHVRAGDCLGETVAG
GTCGVCQKKADALNNCNRAGETGDGNTLCEKCFRKARASELRKCQDGAIT
KRNNN
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mRNA from alignment at L-elsbetiae_contig1570:21258..22430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1570.3986.1 ID=mRNA_L-elsbetiae_contig1570.3986.1|Name=mRNA_L-elsbetiae_contig1570.3986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1173bp|location=Sequence derived from alignment at L-elsbetiae_contig1570:21258..22430+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTATGATTCTTCGCACATATCAGATAAGTGTCCGCAGGTCCGTCT
GTACTTATTTCCAACCGACATATCGCCGAGAAATCAATTACACGCCCCTA
CTTGTAGCTACTCAATTTTTTTCTTGCCACCACCCGCCATCATCATGTCT
TCTCTCACCGCTGCGCAAAAAGCATACCTCGCCAATATGCCCGACAGGGA
GCAGGCCAAGCTGAAGGAGCTCGGCGACATGAAGACGAAGGAGGTGCTGA
AGCAGCTCATCGGCGACGATTCCGTCTCCGAGAAGACGGCTGCTTCCGCC
CCGAAAAAGAGGAAGAAGGAGCACGAGACTCTCGCGGCGTGGGACATAAC
TGGGCAACACGATGGTTGCATCGTCTGCGGCAAGAGCGACATGAAGCAGT
CGCAGCACAGCCTACTGTAAGTTTTCCATGTTCTCTTCAACCTTCTCTGT
CGTTTGTTTGTGATCGCTCTGTTGCGTTTTGCTGTGTTTTCGCACTTTGG
TCATCATCCTCTTTTCTCTCGCGAGTCGTGACTTTTTGTGTCGTTTGTTA
CTTCGTCATATATGTGTCCCAGTGATACTGGATGCTGGGCAGTTTATCGC
CAGCGGAGAGCTCGCCGAGTTCATGCTGCGATGTACCTCGAGCAGCTAGG
ACAACCTCTGTGCTGGATGTCCATCAACCCGTAGTCCAAACGACCAAGGT
AATAGAGTCAATTTTCTCTTGCCGAACCCTACATGCTGTATGTACGAGTC
GCTCCCCTTTGTTTCTTCTTGTTTGTGTCTCATTCTCTCTCCTCGTGCGT
CCCTGTTGCGTATTGTAATTGCAGGTGCCCGAACCCGTGCAACCTCTGGG
TGTCCCAGACCAACACGGAGGGTGATCCTCTGCCGTGCGGCACCTGCCGC
CAGGACATGGCGGGGAAGGTGGCCTACTGGGGCAGGACAGACGACGAGGG
TGACAAGGTCTACTGCCACGTCCGTGCGGGCGACTGCCTCGGAGAGACGG
TTGCTGGCGGCACCTGCGGCGTGTGCCAGAAAAAGGCGGACGCCCTTAAC
AACTGCAACAGGGCTGGGGAGACTGGCGACGGCAACACTCTGTGCGAGAA
GTGCTTTCGCAAGGCGCGCGCGTCCGAGCTCCGCAAGTGCCAGGATGGGG
CAATCACGAAGAGGAACAACAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1570:21258..22430+

>mRNA_L-elsbetiae_contig1570.3986.1 ID=mRNA_L-elsbetiae_contig1570.3986.1|Name=mRNA_L-elsbetiae_contig1570.3986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig1570:21258..22430+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTATGATTCTTCGCACATATCAGATAAGTGTCCGCAGGTCCGTCT
GTACTTATTTCCAACCGACATATCGCCGAGAAATCAATTACACGCCCCTA
CTTGTAGCTACTCAATTTTTTTCTTGCCACCACCCGCCATCATCATGTCT
TCTCTCACCGCTGCGCAAAAAGCATACCTCGCCAATATGCCCGACAGGGA
GCAGGCCAAGCTGAAGGAGCTCGGCGACATGAAGACGAAGGAGGTGCTGA
AGCAGCTCATCGGCGACGATTCCGTCTCCGAGAAGACGGCTGCTTCCGCC
CCGAAAAAGAGGAAGAAGGAGCACGAGACTCTCGCGGCGTGGGACATAAC
TGGGCAACACGATGGTTGCATCGTCTGCGGCAAGAGCGACATGAAGCAGT
CGCAGCACAGCCTACTATGTTCTATGATTCTTCGCACATATCAGATAAGT
GTCCGCAGGTCCGTCTGTACTTATTTCCAACCGACATATCGCCGAGAAAT
CAATTACACGCCCCTACTTGTAGCTACTCAATTTTTTTCTTGCCACCACC
CGCCATCATCATGTCTTCTCTCACCGCTGCGCAAAAAGCATACCTCGCCA
ATATGCCCGACAGGGAGCAGGCCAAGCTGAAGGAGCTCGGCGACATGAAG
ACGAAGGAGGTGCTGAAGCAGCTCATCGGCGACGATTCCGTCTCCGAGAA
GACGGCTGCTTCCGCCCCGAAAAAGAGGAAGAAGGAGCACGAGACTCTCG
CGGCGTGGGACATAACTGGGCAACACGATGGTTGCATCGTCTGCGGCAAG
AGCGACATGAAGCAGTCGCAGCACAGCCTACTGTGCCCGAACCCGTGCAA
CCTCTGGGTGTCCCAGACCAACACGGAGGGTGATCCTCTGCCGTGCGGCA
CCTGCCGCCAGGACATGGCGGGGAAGGTGGCCTACTGGGGCAGGACAGAC
GACGAGGGTGACAAGGTCTACTGCCACGTCCGTGCGGGCGACTGCCTCGG
AGAGACGGTTGCTGGCGGCACCTGCGGCGTGTGCCAGAAAAAGGCGGACG
CCCTTAACAACTGCAACAGGGCTGGGGAGACTGGCGACGGCAACACTCTG
TGCGAGAAGTGCTTTCGCAAGGCGCGCGCGTCCGAGCTCCGCAAGTGCCA
GGATGGGGCAATCACGAAGAGGAACAACAACGTGCCCGAACCCGTGCAAC
CTCTGGGTGTCCCAGACCAACACGGAGGGTGATCCTCTGCCGTGCGGCAC
CTGCCGCCAGGACATGGCGGGGAAGGTGGCCTACTGGGGCAGGACAGACG
ACGAGGGTGACAAGGTCTACTGCCACGTCCGTGCGGGCGACTGCCTCGGA
GAGACGGTTGCTGGCGGCACCTGCGGCGTGTGCCAGAAAAAGGCGGACGC
CCTTAACAACTGCAACAGGGCTGGGGAGACTGGCGACGGCAACACTCTGT
GCGAGAAGTGCTTTCGCAAGGCGCGCGCGTCCGAGCTCCGCAAGTGCCAG
GATGGGGCAATCACGAAGAGGAACAACAAC
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