mRNA_L-elsbetiae_contig157.3977.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig157.3977.1
Unique NamemRNA_L-elsbetiae_contig157.3977.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.150e-45
Identity = 67/89 (75.28%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGESCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            + +VRGHGGS+YF  T+V+SWDT +KKPQE YEGGRSFLNCVSEKLTGE+C+G+AKND GECRMD+I+S++GY+GFFD+ESYG+TWKVR
Sbjct:   57 WYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVR 145
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.470e-45
Identity = 68/89 (76.40%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGESCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            + +VRGHGGS+YF  T+V+SWDT +K+PQE YEGGRSFLNCVSEKLTGE+C+G AKNDMGECRMD+I+S++GY+GFFDSESYG+TWKVR
Sbjct:  102 WYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVR 190
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.900e-45
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGESCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F +VRGHGGSLYF  TIV+SWDT +K+PQE YEGGRSFLNCVSEKLTG+ CEG AKN+MGECRMD+I+S++ YLG+FDSESYG+TWK R
Sbjct:   78 FHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKAR 166
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.320e-42
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGESCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F +VRGHGGSLYF  TIV+SWDT +K+PQE YE GRSFLNCVSEKLTG+ CEG AKN+MGECRMD+I+S++ YLG+FDSESYG+TWKVR
Sbjct:  529 FHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVR 617
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 8.290e-42
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGESCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F +VR HGGS+YF STIV+SWDT +K PQ  Y GGRSFLNCVSEKLTGE C GQA+N+MGECRMD+I+S++GYLG+FDSESYG+TWKVR
Sbjct:  166 FHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVR 254
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.740e-37
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGE-SCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F ++RGHGG+LYF  TIV+SWD   +KPQE Y+GGRSF+ CVSE LTGE +C   A N+MGECRMD+IDS++GYLG+  SE+YGITWKVR
Sbjct:   20 FFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVR 106
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.940e-33
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGE-SCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F ++RGHGG+LYF  TIV+SWD   +KPQE Y+ GRSF+ CVSE LTGE +C   A N+MGECRMD+IDS++GYLG+  SE+YGITWKVR
Sbjct:   91 FFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVR 177
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.340e-30
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGE--SCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F+ +R HGGSL F ST V SWDTS+  P ED   GRS+++ +SE +T E  +CEG AKN MGE RMD+  S++GYLG++DSESYG+TWKVR
Sbjct:   34 FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 124
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.490e-29
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGE--SCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F+ +R HGGSL F ST V SWDTS+  P ED   GRS+++ +SE +T E  +CEG AKN MGE RMD+  S++GYLG++DSESYG+TWKVR
Sbjct:  140 FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 230
[Close]
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.220e-29
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGE--SCEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR 267
            F+ +R HGGSL F ST V SWDTS+  P ED   GRS+++ +SE +T E  +CEG AKN MGE RMD+  S++GYLG++DSESYG+TWKVR
Sbjct:  140 FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVR 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig157.3977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI1.150e-4575.28Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE1.470e-4576.40MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KWQ2_9PHAE4.900e-4576.40MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI2.320e-4276.40Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI8.290e-4275.28Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FZV0_ECTSI1.740e-3766.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI3.940e-3365.56Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KES9_9PHAE2.340e-3059.34MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FXE5_ECTSI2.490e-2959.34Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI7.220e-2959.34Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig157contigL-elsbetiae_contig157:69..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue5.7e-37
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionmannuronan C-5-epimerase internal fragment
Ec32 orthologEc-22_004000.1
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.6910226-CDS-L-elsbetiae_contig157:68..3351622815643.6910226-CDS-L-elsbetiae_contig157:68..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig157 69..335 +
1691683010.2417078-CDS-L-elsbetiae_contig157:68..3351691683010.2417078-CDS-L-elsbetiae_contig157:68..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig157 69..335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig157.3977.1prot_L-elsbetiae_contig157.3977.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig157 69..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig157.3977.1

>prot_L-elsbetiae_contig157.3977.1 ID=prot_L-elsbetiae_contig157.3977.1|Name=mRNA_L-elsbetiae_contig157.3977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
FLQVRGHGGSLYFGSTIVSSWDTSSKKPQEDYEGGRSFLNCVSEKLTGES
CEGQAKNDMGECRMDLIDSDVGYLGFFDSESYGITWKVR
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mRNA from alignment at L-elsbetiae_contig157:69..335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig157.3977.1 ID=mRNA_L-elsbetiae_contig157.3977.1|Name=mRNA_L-elsbetiae_contig157.3977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=267bp|location=Sequence derived from alignment at L-elsbetiae_contig157:69..335+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTACAGGTGCGCGGCCACGGCGGCAGCTTGTACTTCGGATCGACGAT
CGTCTCGTCTTGGGACACCTCCAGCAAGAAACCCCAGGAGGATTACGAGG
GCGGGCGGTCTTTCCTGAACTGCGTGTCCGAGAAGCTGACCGGAGAGAGC
TGCGAGGGCCAGGCCAAGAACGACATGGGAGAGTGCCGCATGGACCTCAT
CGACTCGGACGTGGGGTACCTGGGCTTCTTCGACTCGGAGTCTTACGGCA
TCACGTGGAAGGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig157:69..335+

>mRNA_L-elsbetiae_contig157.3977.1 ID=mRNA_L-elsbetiae_contig157.3977.1|Name=mRNA_L-elsbetiae_contig157.3977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig157:69..335+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTACAGGTGCGCGGCCACGGCGGCAGCTTGTACTTCGGATCGACGAT
CGTCTCGTCTTGGGACACCTCCAGCAAGAAACCCCAGGAGGATTACGAGG
GCGGGCGGTCTTTCCTGAACTGCGTGTCCGAGAAGCTGACCGGAGAGAGC
TGCGAGGGCCAGGCCAAGAACGACATGGGAGAGTGCCGCATGGACCTCAT
CGACTCGGACGTGGGGTACCTGGGCTTCTTCGACTCGGAGTCTTACGGCA
TCACGTGGAAGGTGAGGTTTTTACAGGTGCGCGGCCACGGCGGCAGCTTG
TACTTCGGATCGACGATCGTCTCGTCTTGGGACACCTCCAGCAAGAAACC
CCAGGAGGATTACGAGGGCGGGCGGTCTTTCCTGAACTGCGTGTCCGAGA
AGCTGACCGGAGAGAGCTGCGAGGGCCAGGCCAAGAACGACATGGGAGAG
TGCCGCATGGACCTCATCGACTCGGACGTGGGGTACCTGGGCTTCTTCGA
CTCGGAGTCTTACGGCATCACGTGGAAGGTGAGG
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