mRNA_L-elsbetiae_contig15684.3972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15684.3972.1
Unique NamemRNA_L-elsbetiae_contig15684.3972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: D7FX90_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX90_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.250e-30
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 MKFHPHLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVAS 192
            MKFH HL YTLVLGRENSGLPL+VI EMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLV S
Sbjct: 1618 MKFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 1681
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.930e-30
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 MKFHPHLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVAS 192
            +KFH HL YTLVLGRENSGLPL+VI EMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLV S
Sbjct:  434 IKFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 497
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: A0A834GAZ3_RHOSS (SpoU_methylase domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GAZ3_RHOSS)

HSP 1 Score: 75.9 bits (185), Expect = 6.250e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   16 HLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 177
            HL Y LVLGRE  G+P+E+I  +D C +IPQ GV+RSLN HVSGAI L EY+RQ
Sbjct:   84 HLYYVLVLGREKEGIPVEIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 137
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: A0A6A4KJ97_9ERIC (SpoU_methylase domain-containing protein (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4KJ97_9ERIC)

HSP 1 Score: 75.9 bits (185), Expect = 1.880e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   16 HLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 177
            HL Y LVLGRE  G+P+E+I  +D C +IPQ GV+RSLN HVSGAI L EY+RQ
Sbjct: 2066 HLYYVLVLGREKEGIPVEIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 2119
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: UPI001E1D7A1F (probable methyltransferase TARBP1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7A1F)

HSP 1 Score: 75.1 bits (183), Expect = 3.490e-14
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   31 LVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVASPSN 201
            L+LG E  G+P+E+I+ +DVC +IPQQGV+RSLN HVSGAI++ EY RQ L+ S S+
Sbjct: 1524 LLLGNEKEGIPVELISLLDVCVEIPQQGVIRSLNVHVSGAILIWEYRRQQLMKSCSS 1580
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: UPI0018D8467F (probable methyltransferase TARBP1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8467F)

HSP 1 Score: 73.9 bits (180), Expect = 3.770e-14
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   22 RYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVASPSN 201
            R  L+LG E +G+P+E+I  +DVC +IPQQG++RSLN HVSGA+++ EY+RQ L+A  + 
Sbjct:  221 RTLLLLGHERTGIPVELIQLLDVCVEIPQQGIIRSLNVHVSGALLVWEYTRQRLLAQSAE 280
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: A0A8B7YAB6_ACAPL (probable methyltransferase TARBP1 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YAB6_ACAPL)

HSP 1 Score: 73.6 bits (179), Expect = 5.090e-14
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    4 KFHPHLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVASPSN 201
            K+    R  L+LG E +G+P+E+I  +DVC +IPQQG++RSLN HVSGA+++ EY RQ L+A  + 
Sbjct:  212 KYQFQERTLLLLGHERTGIPVELIQLLDVCVEIPQQGIIRSLNVHVSGALLVWEYRRQRLLAQSTK 277
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: UPI001455118C (probable methyltransferase TARBP1 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455118C)

HSP 1 Score: 73.9 bits (180), Expect = 8.910e-14
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   22 RYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVA 189
            R  L+LG+E  G+P+E+I  +DVC +IPQQGV+RSLN HVSGA+++ EY+RQ L+A
Sbjct: 1598 RTLLLLGQERMGIPVELIQLLDVCVEIPQQGVIRSLNVHVSGALLIWEYTRQRLLA 1653
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BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: X6NWM5_RETFI (SpoU_methylase domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NWM5_RETFI)

HSP 1 Score: 71.2 bits (173), Expect = 8.970e-14
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    7 FHPHLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQM 180
            FHP  +  L++G+E SG+P E+I  +D+C +IPQ GV+RSLNAHVS +I + EY +QM
Sbjct:  115 FHPDKKTILIIGKERSGIPPEIINFVDICVEIPQFGVIRSLNAHVSASITIWEYVKQM 172
[Close]
BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Match: A0A8C0VFD0_CYACU (TAR (HIV-1) RNA binding protein 1 n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0VFD0_CYACU)

HSP 1 Score: 73.2 bits (178), Expect = 1.660e-13
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 LVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVASPSNP 204
            L+LG E+ G+P  +I  +DVC +IPQQG++RSLN HVSGA+++ EY+RQ +  S + P
Sbjct: 1160 LLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQICTSSAEP 1217
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15684.3972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX90_ECTSI5.250e-3092.19SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A6H5L234_9PHAE7.930e-3090.63SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A834GAZ3_RHOSS6.250e-1664.81SpoU_methylase domain-containing protein n=1 Tax=R... [more]
A0A6A4KJ97_9ERIC1.880e-1464.81SpoU_methylase domain-containing protein (Fragment... [more]
UPI001E1D7A1F3.490e-1459.65probable methyltransferase TARBP1 n=1 Tax=Mercenar... [more]
UPI0018D8467F3.770e-1453.33probable methyltransferase TARBP1 n=1 Tax=Patiria ... [more]
A0A8B7YAB6_ACAPL5.090e-1450.00probable methyltransferase TARBP1 n=1 Tax=Acanthas... [more]
UPI001455118C8.910e-1458.93probable methyltransferase TARBP1 n=1 Tax=Asterias... [more]
X6NWM5_RETFI8.970e-1453.45SpoU_methylase domain-containing protein n=1 Tax=R... [more]
A0A8C0VFD0_CYACU1.660e-1351.72TAR (HIV-1) RNA binding protein 1 n=1 Tax=Cyaniste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15684contigL-elsbetiae_contig15684:320..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.7e-25
Seed eggNOG ortholog2880.D7FX90
Preferred nameTARBP1
KEGG koko:K15333
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016423,GO:0016435,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031326,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070039,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:0140102,GO:1901360,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.enzyme-directed rRNA 2'-O-methylation
EggNOG OGsCOG0566@1,KOG0839@2759
EC2.1.1.34
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.2566888-CDS-L-elsbetiae_contig15684:319..5261622815643.2566888-CDS-L-elsbetiae_contig15684:319..526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15684 320..526 +
1691683009.9403634-CDS-L-elsbetiae_contig15684:319..5261691683009.9403634-CDS-L-elsbetiae_contig15684:319..526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15684 320..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15684.3972.1prot_L-elsbetiae_contig15684.3972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15684 320..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15684.3972.1

>prot_L-elsbetiae_contig15684.3972.1 ID=prot_L-elsbetiae_contig15684.3972.1|Name=mRNA_L-elsbetiae_contig15684.3972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MKFHPHLRYTLVLGRENSGLPLEVIAEMDVCCQIPQQGVLRSLNAHVSGA
IILAEYSRQMLVASPSNP*
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mRNA from alignment at L-elsbetiae_contig15684:320..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15684.3972.1 ID=mRNA_L-elsbetiae_contig15684.3972.1|Name=mRNA_L-elsbetiae_contig15684.3972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig15684:320..526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCCACCCGCACCTGCGCTACACGCTGGTTCTGGGGCGCGAGAA
CTCGGGGCTCCCCCTGGAGGTGATCGCCGAGATGGACGTCTGCTGCCAGA
TCCCGCAGCAGGGCGTGCTGCGCTCTCTGAACGCGCACGTGTCGGGGGCT
ATCATCCTGGCCGAGTACTCTCGACAAATGCTGGTTGCTTCGCCCTCCAA
CCCTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15684:320..526+

>mRNA_L-elsbetiae_contig15684.3972.1 ID=mRNA_L-elsbetiae_contig15684.3972.1|Name=mRNA_L-elsbetiae_contig15684.3972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig15684:320..526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCCACCCGCACCTGCGCTACACGCTGGTTCTGGGGCGCGAGAA
CTCGGGGCTCCCCCTGGAGGTGATCGCCGAGATGGACGTCTGCTGCCAGA
TCCCGCAGCAGGGCGTGCTGCGCTCTCTGAACGCGCACGTGTCGGGGGCT
ATCATCCTGGCCGAGTACTCTCGACAAATGCTGGTTGCTTCGCCCTCCAA
CCCTTAGATGAAGTTCCACCCGCACCTGCGCTACACGCTGGTTCTGGGGC
GCGAGAACTCGGGGCTCCCCCTGGAGGTGATCGCCGAGATGGACGTCTGC
TGCCAGATCCCGCAGCAGGGCGTGCTGCGCTCTCTGAACGCGCACGTGTC
GGGGGCTATCATCCTGGCCGAGTACTCTCGACAAATGCTGGTTGCTTCGC
CCTCCAACCCTTAG
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