mRNA_L-elsbetiae_contig1567.3965.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1567.3965.1
Unique NamemRNA_L-elsbetiae_contig1567.3965.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3965.1 vs. uniprot
Match: D8LJR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR8_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 3.540e-117
Identity = 375/857 (43.76%), Postives = 441/857 (51.46%), Query Frame = 1 
Query:    1 MGRGNVDDPEVDPALFPESRVRPWVVDEEAEEKMQEMLDNLEKTLSFVSPVKDGLGVSALDRTLLCDNRGELFFKELAALEAEQKAKAARAASGTCILEPIGEVFEALYSETHGLTRRKHASDLCIHREDNA-CLDE--HQASEVEMEAAAAAATASVDEEGVTLELQGGGE---ELAADPDVARLLSELQAELDAD---CSDGSDTE----------EXXXXXXXXXXXXXXXXXXXXXXDDGSHGCLEATGDKPKPEAKDPPSLPRARDQQ-------SAESALVGQVGSQPQTEPPREGGQERG-----KIDVSRMKIDAPHSCSRQRGGP--RPHSAPSACLSAGGFSRLSSRASSSSLFGRTVSQKLLQATKEAEKQRAAALS----EAPERGGAGVAVALLPRSS-----------ISAAKQNAEALQASLSVKRTSYLSARQPGSARRSPS------------------------PSPATRQRPKTAAAGRRR-HPPDKRGPAGEYNNSDNDNGPLLNHLEREFLFGAGTAAGAAAKAAAD-------QDEACRAPSLRRTTLGRLLQRSTASSSSLPTSSAGVPQHXXXXXXXXXXXXXX---YRRPLSAGSTSGPCAXXXXXXXXXRLGRGI---------CIHYSSRSSSRGG---STAVSAKVRTRPSSAAPDSGRRRRQRSELSTAASDFPFQLDGKRRHPDRSRMNPSAHRDQKIRVGGTAVARGPASHGGAA-TRA--HDGGT---GLSEGSAAAATATATGRMARQPS--LNIHQALEATIKAAIGAVSPREQFVNARKTIATMKIINNKDTTGDILLSTQGMSKARIAEDCWSSEAGRQYR 2262
            M +G+VDDPE DPALFPE RVRPWVVD++AE KM+E+ D+LE+TL+ +SPVK+G+G S LDRTL  DN GELFFKELA+LEA+ +AK A   SG   L PIGE+FE LY ETHGL  R        H  D   C  E  H A EVE  A  AAA       G      GGGE   ELA DPDV RLL+ELQA L  D   CSDGSD E           XXXXXXXXXXXXXXXX   X   +G     EA GD    E KD  + PR   ++       SAE+A   +  S P+      GG+        ++D+SRMKID         GGP  RP SAPSACLSAGGFSRLSSRASSSS   R VSQ+L++AT+E E QRA        +     G G A   L  S+           I   KQNAEALQAS+SVKRT YL++R+P +AR SP                         P  A RQRPKTA A  RR  P + RG AG  NN +    PLLNH E EFLFGAGTA    A             D + RAPSLR+TTLGR+L+RS+ASS S P++   V +                  YRRPLSAG+               R GRG          C  ++     R G   + A +A  R +                                                           + PA+    A TR   H+  T   G       AA A A G   R+P+  +N  QALEATI+ A+  VSP EQFVNARKTIA MK IN KD+TGDILLSTQGM+KARIA+DCWSSEA RQYR
Sbjct:    1 MAKGDVDDPEEDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEGMGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVTSGCVSLYPIGEIFEDLYRETHGLPPRNQNHAYVQHEGDEGNCRPEEIHGAPEVESSAPPAAAVRKGGGRGSRGHDGGGGEGCCELATDPDVVRLLAELQAGLVDDPNCCSDGSDAELGGEGKXXXXXXXXXXXXXXXXXXXXXGDRXTDQEGQ----EAAGD----ETKDGTNGPRLASEEQHPAGGESAEAAAGKERASSPR------GGEHHNPEVVRRVDISRMKIDG--------GGPQARPRSAPSACLSAGGFSRLSSRASSSSRLARAVSQRLMEATREVEGQRAPEAQGGGGDCDRGAGRGEATGRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSAPRAASHSAAPPPAAVRQRPKTAVAKNRRPRPHNNRGHAGNTNNGN----PLLNHRETEFLFGAGTAPEVVAAXXXXXXXXXXXDDVSRRAPSLRKTTLGRMLRRSSASSFS-PSNGGDVRRRNVRPELSECGSSSASSLYRRPLSAGNACS--GSLFLEDGKRRAGRGTAQAIDDDTSCAKHTLGGMPRAGKHAAVAQAAATRAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAARSSLARTRGDRHEAATAAQGCGYHGVGAAPA-AGGSAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQGMTKARIADDCWSSEAQRQYR 827
[Close]
BLAST of mRNA_L-elsbetiae_contig1567.3965.1 vs. uniprot
Match: A0A6H5KY38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY38_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 6.990e-83
Identity = 331/813 (40.71%), Postives = 397/813 (48.83%), Query Frame = 1 
Query:  100 MQEMLDNLEKTLSFVSPVKDGLGVSALDRTLLCDNRGELFFKELAALEAEQKAKAARAASGTCILE-PIGEVFEALYSETHGLTRRK--HASDLCIHREDNACLDEHQASEVEMEAAAAAATASVDEEGV-TLELQGGGE---ELAADPDVARLLSELQAELDAD---CSDGSDTEEXXXXXXXXXXXXXXXXXXXXXX--DDGSHGC-----LEATGDKPKPEAKDPPSLPR-ARDQQSAESALVGQVGSQPQTEPPREGGQERG-----KIDVSRMKIDAPHSCSRQRGGPRPHSAPSACLSAGGFSRLSSRASSSSLFGRTVSQKLLQATKEAEKQRAAALSEAPERGGAGV-----------AVALLPRSS----------ISAAKQNAEALQASLSVKRTSYLSARQPGSARRSPS------------------------PSPATRQRPKTAAAGRRRH-PPDKRGPAGEYNNSDNDNGPLLNHLEREFLFGAGTAAGAAAKAAADQDEACRA-------PSLRRTTLGRLLQRSTASSSSLPTSSAGVPQHXXXXXXXXXXXXXX---YRRPLSAG-STSGPCAXXXXXXXXXRLGRGI---------CIHYSSRSSSRGG-----STAVSAKVRTRPSSAAPDSG-----------------RRRRQRSELSTAASDFPFQLDGKRRHPDRSRMNPSAHRDQKIRVGGTAVARGPASHGGAATRAHDGGTGLSEGSAAAATATATGRMARQPS--LNIHQALEATIKAAIGAVSPREQFVNARKTIATMKIINNKDTTGDILLSTQ 2199
            M+E+ D+LE+TL+ +SP+K+G   S LDRTL  DN GELFFKELA+LEA+ + K A  A G C+ + PIGE+FE LY ETHGL  RK  HA       E N+  +EH     E+E++A  A A  DE G  +    GGGE   ELAADPDV RLL++LQA L  D   CSDGSDTE      XXXXXXXXXXXXX      D+G  G       EA GD    E  D  + PR A ++Q                                ++D+SRMKID     +R      P SAPSACLSAGGFSRLSSRASSSS   RT+SQ+L++AT+E E QRA      PE  G GV           A  L P +S          I   KQNAEALQAS+SVKRT YL++R+P +AR SP                         P  A R+RPKTA A  RRH P + RG AG  NN +    PLLN  E EFLFGAGTA   AA                   PSLR+TTLGR+L+RS+ASS S P++   V +                  YRRPLSAG + SG            R GRG          C  ++  +  R G     + A + +VR RPSSAAP +G                                                  P+A        G    A   ASHG       D G G        AT  A  R  R+P+  +N  QALEATI+ A+  VSP EQFVNARKTI  MK IN +DTTGDILLSTQ
Sbjct:    1 MEELRDDLERTLTSISPIKEGTSESILDRTLRSDNSGELFFKELASLEAKDRTKVAGVAPGGCVSQYPIGEIFENLYRETHGLPPRKQNHAYVQDDGDEGNSRPEEHHGVP-EVESSAPPAVAVRDEGGRGSRHHDGGGEGYCELAADPDVVRLLAQLQAGLVDDPNCCSDGSDTEVGGEGKXXXXXXXXXXXXXGKKRETDEGDRGADQGGQEEAAGD----ETNDGTNGPRLASEEQHPXXXXXXXXXXXXXXXXXXXXXXXHNPKVVRRVDISRMKIDGIDPQAR------PRSAPSACLSAGGFSRLSSRASSSSRLARTMSQRLMEATREVEGQRA------PEAQGGGVDCGRGAGRGEAAGRLRPSTSASRIALAEERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPVGSRGQPSGTRAASRSGAPPPSAVRERPKTAVAKNRRHCPHNSRGHAGNTNNGN----PLLNRRETEFLFGAGTAPEVAAXXXXXXXXXXXXXXXXXXXPSLRKTTLGRMLRRSSASSFS-PSNGGDVRRRNVRPELSECNSSSASSLYRRPLSAGIACSGSL---FLEDGQRRAGRGTAQAIDHGTSCAKHTLGAVPRAGKHAAVAQAAATRVRRRPSSAAPGNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGPAARSSLAQTRGDHHEAAAVASHGWG-----DQGVG--------ATPAAGERAGREPTAMMNARQALEATIREAVDTVSPVEQFVNARKTITDMKQINTQDTTGDILLSTQ 775
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1567.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJR8_ECTSI3.540e-11743.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY38_9PHAE6.990e-8340.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1567contigL-elsbetiae_contig1567:5594..10314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003020.1
Exons6
Model size2265
Cds size2265
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1567.3965.1prot_L-elsbetiae_contig1567.3965.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1567 5594..10314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.550137-CDS-L-elsbetiae_contig1567:5593..56591622815642.550137-CDS-L-elsbetiae_contig1567:5593..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 5594..5659 -
1691683009.467454-CDS-L-elsbetiae_contig1567:5593..56591691683009.467454-CDS-L-elsbetiae_contig1567:5593..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 5594..5659 -
1622815642.5635934-CDS-L-elsbetiae_contig1567:6229..72701622815642.5635934-CDS-L-elsbetiae_contig1567:6229..7270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 6230..7270 -
1691683009.4778473-CDS-L-elsbetiae_contig1567:6229..72701691683009.4778473-CDS-L-elsbetiae_contig1567:6229..7270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 6230..7270 -
1622815642.57704-CDS-L-elsbetiae_contig1567:7746..85951622815642.57704-CDS-L-elsbetiae_contig1567:7746..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 7747..8595 -
1691683009.4875698-CDS-L-elsbetiae_contig1567:7746..85951691683009.4875698-CDS-L-elsbetiae_contig1567:7746..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 7747..8595 -
1622815642.5899024-CDS-L-elsbetiae_contig1567:8922..91321622815642.5899024-CDS-L-elsbetiae_contig1567:8922..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 8923..9132 -
1691683009.498645-CDS-L-elsbetiae_contig1567:8922..91321691683009.498645-CDS-L-elsbetiae_contig1567:8922..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 8923..9132 -
1622815642.6008346-CDS-L-elsbetiae_contig1567:9711..97781622815642.6008346-CDS-L-elsbetiae_contig1567:9711..9778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 9712..9778 -
1691683009.5114949-CDS-L-elsbetiae_contig1567:9711..97781691683009.5114949-CDS-L-elsbetiae_contig1567:9711..9778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 9712..9778 -
1622815642.6168556-CDS-L-elsbetiae_contig1567:10282..103141622815642.6168556-CDS-L-elsbetiae_contig1567:10282..10314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 10283..10314 -
1691683009.5218997-CDS-L-elsbetiae_contig1567:10282..103141691683009.5218997-CDS-L-elsbetiae_contig1567:10282..10314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1567 10283..10314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1567.3965.1

>prot_L-elsbetiae_contig1567.3965.1 ID=prot_L-elsbetiae_contig1567.3965.1|Name=mRNA_L-elsbetiae_contig1567.3965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=755bp
MGRGNVDDPEVDPALFPESRVRPWVVDEEAEEKMQEMLDNLEKTLSFVSP
VKDGLGVSALDRTLLCDNRGELFFKELAALEAEQKAKAARAASGTCILEP
IGEVFEALYSETHGLTRRKHASDLCIHREDNACLDEHQASEVEMEAAAAA
ATASVDEEGVTLELQGGGEELAADPDVARLLSELQAELDADCSDGSDTEE
GEDEGEGEGRGEDAKNENENENDDGSHGCLEATGDKPKPEAKDPPSLPRA
RDQQSAESALVGQVGSQPQTEPPREGGQERGKIDVSRMKIDAPHSCSRQR
GGPRPHSAPSACLSAGGFSRLSSRASSSSLFGRTVSQKLLQATKEAEKQR
AAALSEAPERGGAGVAVALLPRSSISAAKQNAEALQASLSVKRTSYLSAR
QPGSARRSPSPSPATRQRPKTAAAGRRRHPPDKRGPAGEYNNSDNDNGPL
LNHLEREFLFGAGTAAGAAAKAAADQDEACRAPSLRRTTLGRLLQRSTAS
SSSLPTSSAGVPQHHASVLPESSSASSLYRRPLSAGSTSGPCAADDHARR
RRRLGRGICIHYSSRSSSRGGSTAVSAKVRTRPSSAAPDSGRRRRQRSEL
STAASDFPFQLDGKRRHPDRSRMNPSAHRDQKIRVGGTAVARGPASHGGA
ATRAHDGGTGLSEGSAAAATATATGRMARQPSLNIHQALEATIKAAIGAV
SPREQFVNARKTIATMKIINNKDTTGDILLSTQGMSKARIAEDCWSSEAG
RQYR*
back to top

mRNA from alignment at L-elsbetiae_contig1567:5594..10314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1567.3965.1 ID=mRNA_L-elsbetiae_contig1567.3965.1|Name=mRNA_L-elsbetiae_contig1567.3965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4721bp|location=Sequence derived from alignment at L-elsbetiae_contig1567:5594..10314- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAGAGGGAATGTCGATGACCCTGAGGTGTGGTGCTTCCTTTCTTT
CCCGTGTTAGATGAAACAGAAACATGTGTCGCATCGTGTGTGAGGGCTCC
GCACTCCGCGCATAATTGCGCATGTCTGATGTACATTCAAGGAGTTCTTT
ACAATCCCCTGCCGGTTGCACTGCTATTTGTGTTGGGCTGGAGGGGGTTT
ATGCACCAAGCAAATTACGACTGGCATGCTCTCGAGGCATATCTAATCTT
TATCGGAGAAGAGCTATGCCAACTCTCTGCTGTATGTAGATGCACTCGTC
GTTCCTTATACACCAGATAGACTAGTGCTTGGTAGTCTAAATAGACCAGA
CTAGTGGTCTACTTTTTGCTGGATTCAAGCGGATATCATCAATAAATAGA
TAGACTACGGCAATCGATAGACTAGATAGATAGGCAGAGATATTGTACTC
TGCACGTATACGTACAGAGTGCAACATCGTGTTGAGCGAAGCACTTGCCC
CTCTCGCGCGCGGTCTCACTCTCCGTTGACACAGAGAGACCCGGCCCTCT
TTCCGGAGAGCCGGGTACGACCGTGGGTGGTTGACGAGGAAGCCGAGGAA
AAGGTCAGAAAAGCGTGCTCTACGCATATCTATGGCTTGAGCCACGACAT
ACATATTAGCCTAGCAGGGCTTGCCGCGCCGATCTCTTGGACCTGACGGT
GTAAATGCGAGCTTCAATCTAAAACGGAGTAAACTATATGGCATAGAAGA
ATGGGTCTCCCCCACGTCACTACTACTGTACATACGGTGTAGCTGCTCTA
GTACAGTCAGTGGGCGTATCTTGTGATTTGATAAGCAGGTTTGCAGGTTA
TCGCTGCCGCAAAGAAGGTTTCTCCCGCGAAGCAGGGCCACACGAGAAGT
GTGAGGGGCGCACATACGAAACAGTATCGCGTCGTATACTGTTGCTAAAC
TGCGAAGCGTATCCATATCAACACGTCCGCAGTATGAAACACGGGGGGGT
GGTCTATTTGACGTAGTCTACAGCAATCTATGCACCCGCCGTACACCTAA
AGACGTCGCCTACATAAAGGCGCACTTGATGACGACAGTCAATGTGTCGA
TCCACGTCAGAACAGCAACCGTATCGCCACGCCTACTTGGCGCTGCTTTG
CTTTGGATTGTTGACATTCATCGATCCGGCAGATGCAAGAAATGCTTGAC
AACCTTGAGAAGACGCTGTCCTTCGTGTCACCGGTCAAGGACGGCCTGGG
CGTGAGCGCCCTAGACCGAACCCTTCTCTGCGATAACCGTGGGGAGCTTT
TCTTCAAGGAGCTGGCCGCTTTGGAGGCCGAACAGAAAGCCAAAGCTGCA
AGAGCCGCCTCGGGGACATGCATCCTCGAACCCATTGGCGAGGTGGGACT
CTTGACTTGTTGCGTAGTGCAACGTTAGTCGGCCTGTGCTTCGTTTGGTA
ACAGTCAACATGCAACAGCTGCACGCCTGCATATTCTCGGCACGTACTAC
AGTAGCTACAACAGCCTCAGAGTAACGAGTAAACACCATGTCTCAAACAA
CGGAGAAACGACGAGAACATATATCTTCTTCTGTGTGCACCTGATCCTTG
AGGTGAACATCGCTGCAGATGCAGCTCGTAAACTTATTTAGAGATCCAAA
AACAAGCATGCGTAGCAGTAGTGCCGTTACTCCACTTCACGGCCACCGCG
TCAATCTCTCGCTCGGCAGGTCTTCGAGGCTCTATACAGCGAAACCCATG
GGCTTACCCGACGAAAACATGCATCTGACCTATGCATACATCGAGAAGAC
AATGCATGCTTGGACGAGCACCAAGCTTCCGAGGTAGAGATGGAGGCGGC
GGCAGCGGCAGCGACAGCATCGGTTGACGAGGAAGGGGTGACTCTGGAGC
TCCAAGGTGGAGGAGAGGAGTTAGCCGCCGACCCCGACGTGGCACGCCTA
CTGTCCGAGCTGCAGGCTGAACTCGACGCCGACTGCAGCGACGGTTCGGA
CACCGAAGAGGGCGAGGACGAAGGAGAGGGAGAGGGACGCGGGGAGGACG
CAAAGAACGAGAATGAGAACGAGAACGACGACGGAAGCCATGGATGTCTA
GAGGCAACGGGGGACAAACCAAAACCCGAAGCGAAAGATCCACCATCGCT
CCCGAGAGCAAGAGACCAACAGTCAGCAGAAAGCGCGTTGGTAGGGCAGG
TGGGGTCCCAACCTCAGACCGAACCGCCCCGGGAGGGTGGGCAGGAGAGG
GGGAAAATCGACGTCAGCAGGATGAAGATAGATGCACCGCACAGCTGCAG
CCGGCAGCGAGGAGGGCCGAGGCCGCACTCGGCTCCCTCGGCGTGCTTGT
CGGCGGGAGGCTTTTCGAGGCTGTCGTCGCGGGCGTCCAGCAGTTCGCTT
TTCGGTCGCACGGTGAGCCAAAAGCTGCTGCAAGCCACGAAAGAAGCTGA
GAAGCAACGAGCGGCGGCGCTGTCCGAGGCGCCGGAGAGAGGAGGGGCGG
GCGTAGCGGTGGCACTCCTTCCACGTAGTAGCATAAGCGCCGCCAAGCAA
AATGCAGAGGCCCTCCAGGTACGGCGTGCAGCAGTGCGATTCGGTTCTTG
CTGAGGGGGTGGCGACGTGGTTCTACGCCGTGTTTCGGGCGAGATGTTGA
GGAAAATCACGTTGACAGCCTCCAACAATTGGTGGTCTATTGCGGGTACA
TACCGAACTAACTTGTCGTGCGTCGTTGGGGAGGGCAGGAGTTCCGTACC
CCGAGGCGCTGTTGTGTCGTAGGGTGCCTTGAACGTGACTGAGTGTGCTT
GTGCTTTCCTTCTGTGGTGGCGCCTCGTCCGTGCACCGGGATTTATGTCA
GTCCTTTCAACCTAAACGAATACTTTCGATTTCCTCGGGCGAGCGGAAGC
GCTTGGGTAGCACAGCAGCTATGTTGCCCACGGCGGAGAAATCGACAATA
AAACGTTTGCATGATAATCCCGCCATCCGAGCGCGATACCGCACACGCCA
AGCAGGTAAATTGCCCCCTTCCCTTGCGCGGCGTCATTCCTCAGGCAAGC
TTGTCGGTGAAGCGGACGAGTTACCTCAGTGCCCGACAACCTGGCTCCGC
TAGGCGGTCCCCGTCACCGTCACCTGCCACGAGGCAACGGCCAAAAACTG
CAGCAGCAGGCCGTCGGCGCCACCCACCAGATAAACGCGGTCCCGCCGGC
GAGTACAACAACAGCGACAACGACAACGGCCCTTTGCTGAACCATCTCGA
ACGGGAGTTTCTGTTCGGGGCCGGGACTGCGGCAGGGGCCGCGGCGAAGG
CGGCGGCCGACCAAGATGAAGCCTGCAGAGCGCCTTCGCTGCGCAGGACG
ACGCTTGGTCGACTGCTTCAGCGCTCGACAGCTTCTTCCTCTTCCCTCCC
GACAAGCAGTGCAGGCGTCCCGCAACACCATGCGTCTGTGCTGCCGGAGA
GTAGCAGTGCTTCTTCCCTGTATCGCCGCCCGTTGTCCGCGGGTAGTACG
AGTGGTCCTTGCGCGGCGGACGACCATGCTAGGAGGAGAAGGAGGCTGGG
GCGAGGTATTTGTATCCACTACAGCAGCCGCTCTTCCTCCAGAGGCGGAA
GTACGGCGGTGTCGGCGAAGGTGAGAACCAGACCCTCGAGTGCTGCGCCG
GACAGCGGCCGTCGAAGAAGACAGCGGTCAGAATTGTCCACCGCTGCGAG
CGATTTTCCGTTCCAGCTGGACGGTAAACGTCGGCACCCTGACCGAAGCC
GGATGAACCCTTCCGCTCACCGAGACCAAAAAATACGAGTCGGCGGGACA
GCCGTAGCCCGAGGCCCTGCTAGCCACGGCGGGGCTGCAACGCGTGCCCA
TGACGGAGGGACGGGGCTGTCAGAAGGCAGCGCGGCGGCGGCGACGGCGA
CGGCGACGGGACGCATGGCTAGACAACCCTCCCTTAACATTCATCAGGCC
CTGGAGGCGACCATCAAGGCGGCCATCGGCGCGGTTTCTCCACGCGAGCA
GTTCGTTAACGCGAGGAAGACTATCGCAACCATGAAAATAATCAACAACA
AGGACACAACCGGGGATATCCTCCTGTCGACACAGGTCAGTCAGCTTCCA
TCACAATGCCAACTCAATATACGCAACGATGTTTCGTGGGCGCGCTAGTT
GATCGTTCGCGAGGTGTCCAGAGTCCTAGGCCACCGTAAACCTTTAAGGG
CTGTCATGTTTCTTTCAAGAATGAATGGCTGCTGCGTAGCGTCACGATCA
TCGCTACTAAAACACGAGCTATATCGTCGATGCCGCAGAGGTGGGTCAGC
ACGCTGCATGTAGCTTATTCGTTGCGATGAGCCTGTTCTCCTCTTCTTGC
GGTAGAATTCCATCCGTGCCCTGGTAACTTGAGCTTCAGCTGTACCGTAC
ACGCGATGAATACTGCGCTGTTCGGTATCCAGCTAGGAGCGAGCTGAAGG
TTTCCGCAGACGGCGTTCCACTACCCGGTATCGTGGGCGAACAATGCCCG
CAGAAATCAGTGTTGTTGTTCTTCCGACCCCAGCGTTTTAGCGCTTTTGT
CGGACGCAAACCAAGAAAGAAAACAAAATACAGCCTCCCCGGGCAGCCAC
GACTCGTTCATTGATTACTTGAACGCAACACACCCCTGTGCGTGGTCGCT
CTCAGGGGATGTCGAAGGCACGGATAGCAGAGGACTGCTGGTCCAGCGAG
GCTGGCCGGCAATATCGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1567:5594..10314-

>mRNA_L-elsbetiae_contig1567.3965.1 ID=mRNA_L-elsbetiae_contig1567.3965.1|Name=mRNA_L-elsbetiae_contig1567.3965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4530bp|location=Sequence derived from alignment at L-elsbetiae_contig1567:5594..10314- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAGAGGGAATGTCGATGACCCTGAGGTATGGGCAGAGGGAATGTC
GATGACCCTGAGGTAGACCCGGCCCTCTTTCCGGAGAGCCGGGTACGACC
GTGGGTGGTTGACGAGGAAGCCGAGGAAAAGAGACCCGGCCCTCTTTCCG
GAGAGCCGGGTACGACCGTGGGTGGTTGACGAGGAAGCCGAGGAAAAGAT
GCAAGAAATGCTTGACAACCTTGAGAAGACGCTGTCCTTCGTGTCACCGG
TCAAGGACGGCCTGGGCGTGAGCGCCCTAGACCGAACCCTTCTCTGCGAT
AACCGTGGGGAGCTTTTCTTCAAGGAGCTGGCCGCTTTGGAGGCCGAACA
GAAAGCCAAAGCTGCAAGAGCCGCCTCGGGGACATGCATCCTCGAACCCA
TTGGCGAGATGCAAGAAATGCTTGACAACCTTGAGAAGACGCTGTCCTTC
GTGTCACCGGTCAAGGACGGCCTGGGCGTGAGCGCCCTAGACCGAACCCT
TCTCTGCGATAACCGTGGGGAGCTTTTCTTCAAGGAGCTGGCCGCTTTGG
AGGCCGAACAGAAAGCCAAAGCTGCAAGAGCCGCCTCGGGGACATGCATC
CTCGAACCCATTGGCGAGGTCTTCGAGGCTCTATACAGCGAAACCCATGG
GCTTACCCGACGAAAACATGCATCTGACCTATGCATACATCGAGAAGACA
ATGCATGCTTGGACGAGCACCAAGCTTCCGAGGTAGAGATGGAGGCGGCG
GCAGCGGCAGCGACAGCATCGGTTGACGAGGAAGGGGTGACTCTGGAGCT
CCAAGGTGGAGGAGAGGAGTTAGCCGCCGACCCCGACGTGGCACGCCTAC
TGTCCGAGCTGCAGGCTGAACTCGACGCCGACTGCAGCGACGGTTCGGAC
ACCGAAGAGGGCGAGGACGAAGGAGAGGGAGAGGGACGCGGGGAGGACGC
AAAGAACGAGAATGAGAACGAGAACGACGACGGAAGCCATGGATGTCTAG
AGGCAACGGGGGACAAACCAAAACCCGAAGCGAAAGATCCACCATCGCTC
CCGAGAGCAAGAGACCAACAGTCAGCAGAAAGCGCGTTGGTAGGGCAGGT
GGGGTCCCAACCTCAGACCGAACCGCCCCGGGAGGGTGGGCAGGAGAGGG
GGAAAATCGACGTCAGCAGGATGAAGATAGATGCACCGCACAGCTGCAGC
CGGCAGCGAGGAGGGCCGAGGCCGCACTCGGCTCCCTCGGCGTGCTTGTC
GGCGGGAGGCTTTTCGAGGCTGTCGTCGCGGGCGTCCAGCAGTTCGCTTT
TCGGTCGCACGGTGAGCCAAAAGCTGCTGCAAGCCACGAAAGAAGCTGAG
AAGCAACGAGCGGCGGCGCTGTCCGAGGCGCCGGAGAGAGGAGGGGCGGG
CGTAGCGGTGGCACTCCTTCCACGTAGTAGCATAAGCGCCGCCAAGCAAA
ATGCAGAGGCCCTCCAGGTCTTCGAGGCTCTATACAGCGAAACCCATGGG
CTTACCCGACGAAAACATGCATCTGACCTATGCATACATCGAGAAGACAA
TGCATGCTTGGACGAGCACCAAGCTTCCGAGGTAGAGATGGAGGCGGCGG
CAGCGGCAGCGACAGCATCGGTTGACGAGGAAGGGGTGACTCTGGAGCTC
CAAGGTGGAGGAGAGGAGTTAGCCGCCGACCCCGACGTGGCACGCCTACT
GTCCGAGCTGCAGGCTGAACTCGACGCCGACTGCAGCGACGGTTCGGACA
CCGAAGAGGGCGAGGACGAAGGAGAGGGAGAGGGACGCGGGGAGGACGCA
AAGAACGAGAATGAGAACGAGAACGACGACGGAAGCCATGGATGTCTAGA
GGCAACGGGGGACAAACCAAAACCCGAAGCGAAAGATCCACCATCGCTCC
CGAGAGCAAGAGACCAACAGTCAGCAGAAAGCGCGTTGGTAGGGCAGGTG
GGGTCCCAACCTCAGACCGAACCGCCCCGGGAGGGTGGGCAGGAGAGGGG
GAAAATCGACGTCAGCAGGATGAAGATAGATGCACCGCACAGCTGCAGCC
GGCAGCGAGGAGGGCCGAGGCCGCACTCGGCTCCCTCGGCGTGCTTGTCG
GCGGGAGGCTTTTCGAGGCTGTCGTCGCGGGCGTCCAGCAGTTCGCTTTT
CGGTCGCACGGTGAGCCAAAAGCTGCTGCAAGCCACGAAAGAAGCTGAGA
AGCAACGAGCGGCGGCGCTGTCCGAGGCGCCGGAGAGAGGAGGGGCGGGC
GTAGCGGTGGCACTCCTTCCACGTAGTAGCATAAGCGCCGCCAAGCAAAA
TGCAGAGGCCCTCCAGGCAAGCTTGTCGGTGAAGCGGACGAGTTACCTCA
GTGCCCGACAACCTGGCTCCGCTAGGCGGTCCCCGTCACCGTCACCTGCC
ACGAGGCAACGGCCAAAAACTGCAGCAGCAGGCCGTCGGCGCCACCCACC
AGATAAACGCGGTCCCGCCGGCGAGTACAACAACAGCGACAACGACAACG
GCCCTTTGCTGAACCATCTCGAACGGGAGTTTCTGTTCGGGGCCGGGACT
GCGGCAGGGGCCGCGGCGAAGGCGGCGGCCGACCAAGATGAAGCCTGCAG
AGCGCCTTCGCTGCGCAGGACGACGCTTGGTCGACTGCTTCAGCGCTCGA
CAGCTTCTTCCTCTTCCCTCCCGACAAGCAGTGCAGGCGTCCCGCAACAC
CATGCGTCTGTGCTGCCGGAGAGTAGCAGTGCTTCTTCCCTGTATCGCCG
CCCGTTGTCCGCGGGTAGTACGAGTGGTCCTTGCGCGGCGGACGACCATG
CTAGGAGGAGAAGGAGGCTGGGGCGAGGTATTTGTATCCACTACAGCAGC
CGCTCTTCCTCCAGAGGCGGAAGTACGGCGGTGTCGGCGAAGGTGAGAAC
CAGACCCTCGAGTGCTGCGCCGGACAGCGGCCGTCGAAGAAGACAGCGGT
CAGAATTGTCCACCGCTGCGAGCGATTTTCCGTTCCAGCTGGACGGTAAA
CGTCGGCACCCTGACCGAAGCCGGATGAACCCTTCCGCTCACCGAGACCA
AAAAATACGAGTCGGCGGGACAGCCGTAGCCCGAGGCCCTGCTAGCCACG
GCGGGGCTGCAACGCGTGCCCATGACGGAGGGACGGGGCTGTCAGAAGGC
AGCGCGGCGGCGGCGACGGCGACGGCGACGGGACGCATGGCTAGACAACC
CTCCCTTAACATTCATCAGGCCCTGGAGGCGACCATCAAGGCGGCCATCG
GCGCGGTTTCTCCACGCGAGCAGTTCGTTAACGCGAGGAAGACTATCGCA
ACCATGAAAATAATCAACAACAAGGACACAACCGGGGATATCCTCCTGTC
GACACAGGCAAGCTTGTCGGTGAAGCGGACGAGTTACCTCAGTGCCCGAC
AACCTGGCTCCGCTAGGCGGTCCCCGTCACCGTCACCTGCCACGAGGCAA
CGGCCAAAAACTGCAGCAGCAGGCCGTCGGCGCCACCCACCAGATAAACG
CGGTCCCGCCGGCGAGTACAACAACAGCGACAACGACAACGGCCCTTTGC
TGAACCATCTCGAACGGGAGTTTCTGTTCGGGGCCGGGACTGCGGCAGGG
GCCGCGGCGAAGGCGGCGGCCGACCAAGATGAAGCCTGCAGAGCGCCTTC
GCTGCGCAGGACGACGCTTGGTCGACTGCTTCAGCGCTCGACAGCTTCTT
CCTCTTCCCTCCCGACAAGCAGTGCAGGCGTCCCGCAACACCATGCGTCT
GTGCTGCCGGAGAGTAGCAGTGCTTCTTCCCTGTATCGCCGCCCGTTGTC
CGCGGGTAGTACGAGTGGTCCTTGCGCGGCGGACGACCATGCTAGGAGGA
GAAGGAGGCTGGGGCGAGGTATTTGTATCCACTACAGCAGCCGCTCTTCC
TCCAGAGGCGGAAGTACGGCGGTGTCGGCGAAGGTGAGAACCAGACCCTC
GAGTGCTGCGCCGGACAGCGGCCGTCGAAGAAGACAGCGGTCAGAATTGT
CCACCGCTGCGAGCGATTTTCCGTTCCAGCTGGACGGTAAACGTCGGCAC
CCTGACCGAAGCCGGATGAACCCTTCCGCTCACCGAGACCAAAAAATACG
AGTCGGCGGGACAGCCGTAGCCCGAGGCCCTGCTAGCCACGGCGGGGCTG
CAACGCGTGCCCATGACGGAGGGACGGGGCTGTCAGAAGGCAGCGCGGCG
GCGGCGACGGCGACGGCGACGGGACGCATGGCTAGACAACCCTCCCTTAA
CATTCATCAGGCCCTGGAGGCGACCATCAAGGCGGCCATCGGCGCGGTTT
CTCCACGCGAGCAGTTCGTTAACGCGAGGAAGACTATCGCAACCATGAAA
ATAATCAACAACAAGGACACAACCGGGGATATCCTCCTGTCGACACAGGG
GATGTCGAAGGCACGGATAGCAGAGGACTGCTGGTCCAGCGAGGCTGGCC
GGCAATATCGGTGAGGGATGTCGAAGGCACGGATAGCAGAGGACTGCTGG
TCCAGCGAGGCTGGCCGGCAATATCGGTGA
back to top